Wall clock time and date at job start Tue Mar 31 2020 14:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47009 * 2 1 4 4 C 1.52997 * 109.47623 * 239.99718 * 2 1 3 5 5 O 1.42899 * 109.47031 * 119.99492 * 2 1 3 6 6 C 1.35966 * 116.99937 * 61.77618 * 5 2 1 7 7 C 1.38539 * 120.06913 * 354.10174 * 6 5 2 8 8 C 1.38439 * 119.98878 * 179.77018 * 7 6 5 9 9 F 1.35105 * 119.93118 * 180.23192 * 8 7 6 10 10 C 1.38473 * 120.13136 * 0.48003 * 8 7 6 11 11 C 1.38195 * 120.13777 * 359.77128 * 10 8 7 12 12 C 1.38709 * 120.00941 * 359.97438 * 11 10 8 13 13 N 1.40223 * 120.06889 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99679 * 18.77539 * 13 12 11 15 15 O 1.21299 * 120.00236 * 5.32564 * 14 13 12 16 16 C 1.50704 * 120.00235 * 185.33065 * 14 13 12 17 17 S 1.80995 * 109.47387 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00015 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99764 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00139 * 180.02562 * 18 17 16 21 21 N 1.31637 * 119.99897 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00227 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47567 * 59.99441 * 22 20 18 24 24 H 1.48500 * 109.47394 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46983 * 299.99742 * 22 20 18 26 26 H 1.09002 * 109.47457 * 320.82423 * 1 2 3 27 27 H 1.08997 * 109.47077 * 80.82615 * 1 2 3 28 28 H 1.09002 * 109.47350 * 200.82657 * 1 2 3 29 29 H 1.09001 * 109.47075 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46582 * 299.99725 * 3 2 1 31 31 H 1.08997 * 109.47415 * 59.99445 * 3 2 1 32 32 H 1.09000 * 109.46846 * 292.41764 * 4 2 1 33 33 H 1.09001 * 109.46662 * 52.40613 * 4 2 1 34 34 H 1.08993 * 109.47500 * 172.40723 * 4 2 1 35 35 H 1.08001 * 120.00790 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.93364 * 179.75339 * 10 8 7 37 37 H 1.07998 * 120.00098 * 179.97438 * 11 10 8 38 38 H 0.96995 * 120.00641 * 198.76935 * 13 12 11 39 39 H 1.08998 * 109.46705 * 300.00252 * 16 14 13 40 40 H 1.09006 * 109.46720 * 59.99167 * 16 14 13 41 41 H 0.97000 * 120.00129 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0062 -0.6735 1.1668 6 6 1.6718 -1.9844 1.3026 7 6 0.8031 -2.5762 0.4001 8 6 0.4675 -3.9123 0.5372 9 9 -0.3761 -4.4895 -0.3463 10 6 0.9906 -4.6569 1.5809 11 6 1.8535 -4.0706 2.4872 12 6 2.1979 -2.7338 2.3524 13 7 3.0729 -2.1374 3.2716 14 6 3.8679 -2.9066 4.0416 15 8 3.8976 -4.1074 3.8731 16 6 4.7199 -2.2747 5.1121 17 16 5.6657 -3.5593 5.9671 18 6 6.5460 -2.5692 7.1288 19 1 6.4016 -1.4990 7.1451 20 6 7.4251 -3.1645 8.0228 21 7 7.6007 -4.4690 8.0032 22 14 8.3578 -2.1149 9.2547 23 1 7.3921 -1.3973 10.1251 24 1 9.2248 -2.9845 10.0898 25 1 9.1977 -1.1285 8.5288 26 1 -0.3634 0.7967 0.6492 27 1 -0.3633 0.1638 -1.0145 28 1 -0.3634 -0.9605 0.3654 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.7917 -1.7806 -1.1839 33 1 1.5701 -0.2919 -2.1339 34 1 3.1215 -0.6052 -1.3196 35 1 0.3904 -1.9963 -0.4121 36 1 0.7235 -5.6980 1.6871 37 1 2.2599 -4.6533 3.3007 38 1 3.1062 -1.1715 3.3532 39 1 5.4058 -1.5607 4.6562 40 1 4.0802 -1.7579 5.8276 41 1 8.2148 -4.8851 8.6282 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270851991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:59 Heat of formation + Delta-G solvation = -92.298053 kcal Electronic energy + Delta-G solvation = -25229.291144 eV Core-core repulsion = 21343.604969 eV Total energy + Delta-G solvation = -3885.686174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.92964 -42.23162 -40.91267 -38.56000 -35.95147 -34.86821 -34.57870 -32.10524 -31.41578 -29.17047 -28.38696 -28.22854 -27.63929 -24.72795 -23.64877 -21.79947 -21.52068 -19.97486 -19.15627 -18.77068 -18.13834 -17.52407 -17.01518 -16.87191 -16.65053 -16.50814 -16.22289 -16.20611 -15.65101 -15.52629 -15.01475 -14.84207 -14.53802 -14.32874 -14.18193 -13.98891 -13.77974 -13.23088 -13.16954 -13.14660 -12.87697 -12.86685 -12.80197 -12.64074 -12.63387 -12.22724 -11.76367 -11.68864 -11.50350 -11.43851 -11.12278 -10.78086 -10.30009 -9.67620 -8.83490 -8.65188 -8.34449 -6.12394 -0.04810 0.15598 1.21747 1.44104 1.44727 1.45702 1.55065 1.96390 2.10772 2.27146 2.53339 3.00033 3.17918 3.26902 3.58455 3.73852 3.74446 3.80067 3.93165 3.94715 4.02401 4.25034 4.31283 4.46794 4.55392 4.57075 4.62135 4.73834 4.79640 4.85962 4.90966 4.94535 5.00889 5.14586 5.20727 5.28434 5.31802 5.33089 5.42638 5.70483 6.20057 6.28697 6.31505 7.01578 7.07200 8.74376 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.002752 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.966891 B =10172.115867 C =11458.727292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.100 3.900 3 C -0.136 4.136 4 C -0.199 4.199 5 O -0.312 6.312 6 C 0.136 3.864 7 C -0.228 4.228 8 C 0.104 3.896 9 F -0.139 7.139 10 C -0.167 4.167 11 C -0.097 4.097 12 C 0.102 3.898 13 N -0.645 5.645 14 C 0.536 3.464 15 O -0.534 6.534 16 C -0.130 4.130 17 S -0.140 6.140 18 C -0.549 4.549 19 H 0.084 0.916 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.262 1.262 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.188 0.812 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.428 0.572 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.485 12.867 -19.217 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.063 3.937 3 C -0.193 4.193 4 C -0.256 4.256 5 O -0.226 6.226 6 C 0.088 3.912 7 C -0.247 4.247 8 C 0.083 3.917 9 F -0.117 7.117 10 C -0.186 4.186 11 C -0.117 4.117 12 C 0.007 3.993 13 N -0.291 5.291 14 C 0.324 3.676 15 O -0.410 6.410 16 C -0.281 4.281 17 S 0.087 5.913 18 C -0.697 4.697 19 H 0.102 0.898 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.187 1.187 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.204 0.796 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.231 10.897 -19.282 27.459 hybrid contribution 0.479 1.632 0.813 1.886 sum -15.752 12.530 -18.469 27.318 Atomic orbital electron populations 1.22951 0.93750 1.04220 1.04975 1.22174 0.94840 0.93636 0.83009 1.21860 1.02077 0.91159 1.04228 1.22860 1.02754 1.02050 0.97934 1.86116 1.72576 1.18712 1.45233 1.18059 0.95634 0.84704 0.92848 1.21791 1.03783 0.94886 1.04266 1.17451 0.92905 0.91533 0.89770 1.91489 1.68566 1.84690 1.66982 1.21132 1.00219 1.01924 0.95366 1.21433 0.96375 0.93446 1.00472 1.17399 0.96648 0.93095 0.92200 1.43164 1.37718 1.11361 1.36834 1.20262 0.79083 0.86737 0.81568 1.90600 1.65322 1.16128 1.68981 1.23361 1.01700 1.03733 0.99260 1.85533 1.52278 1.11868 1.41576 1.23187 1.29528 0.95934 1.21004 0.89784 1.26102 0.97072 0.96625 0.99222 1.70168 1.35986 1.11149 1.37406 0.85021 0.77943 0.77773 0.77381 1.18663 1.20481 1.18669 0.90807 0.88626 0.90778 0.91929 0.88091 0.91305 0.91238 0.88367 0.91951 0.79553 0.83155 0.83088 0.73364 0.86803 0.86633 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 8.06 71.98 0.58 -1.52 16 2 C 0.10 1.31 1.11 -10.80 -0.01 1.30 16 3 C -0.14 -1.33 8.74 71.98 0.63 -0.71 16 4 C -0.20 -2.43 8.09 71.98 0.58 -1.85 16 5 O -0.31 -6.10 9.13 -93.16 -0.85 -6.95 16 6 C 0.14 3.08 6.08 22.60 0.14 3.22 16 7 C -0.23 -4.56 5.74 22.39 0.13 -4.43 16 8 C 0.10 2.35 7.30 22.37 0.16 2.51 16 9 F -0.14 -3.06 17.26 44.97 0.78 -2.28 16 10 C -0.17 -4.19 10.02 22.32 0.22 -3.96 16 11 C -0.10 -2.89 8.80 22.37 0.20 -2.69 16 12 C 0.10 2.86 6.53 38.16 0.25 3.11 16 13 N -0.65 -18.14 5.34 -303.06 -1.62 -19.76 16 14 C 0.54 19.50 7.71 87.66 0.68 20.18 16 15 O -0.53 -23.36 12.72 -3.09 -0.04 -23.40 16 16 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 17 S -0.14 -7.55 20.57 -56.49 -1.16 -8.71 16 18 C -0.55 -30.78 9.50 67.95 0.65 -30.13 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.33 13.22 21.65 0.29 -55.04 16 22 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H 0.07 0.72 7.96 -2.39 -0.02 0.70 16 27 H 0.09 0.58 7.85 -2.39 -0.02 0.56 16 28 H 0.07 0.97 4.60 -2.39 -0.01 0.95 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.68 8.13 -2.39 -0.02 0.66 16 32 H 0.07 1.02 4.68 -2.39 -0.01 1.01 16 33 H 0.10 0.70 7.97 -2.39 -0.02 0.68 16 34 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 35 H 0.19 2.78 3.57 -2.91 -0.01 2.77 16 36 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 37 H 0.15 5.31 5.35 -2.93 -0.02 5.30 16 38 H 0.43 9.52 8.23 -92.71 -0.76 8.75 16 39 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 40 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -71.83 351.64 4.84 -66.99 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.32 Total: 22.31 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.10 Total: -18.23 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.33 Total: -74.80 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.89 Total: -30.35 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.16 Total: -8.71 kcal Total: -71.83 4.84 -66.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270851991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.310 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds