Wall clock time and date at job start Tue Mar 31 2020 15:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99971 * 2 1 4 4 H 1.09000 * 109.47229 * 13.45590 * 3 2 1 5 5 C 1.50701 * 109.47309 * 133.46362 * 3 2 1 6 6 C 1.38236 * 119.97467 * 39.72246 * 5 3 2 7 7 C 1.38196 * 120.02575 * 179.76898 * 6 5 3 8 8 C 1.38465 * 119.97544 * 0.50685 * 7 6 5 9 9 F 1.35090 * 120.02557 * 179.76742 * 8 7 6 10 10 C 1.38460 * 119.94256 * 359.74900 * 8 7 6 11 11 C 1.38200 * 119.97934 * 359.97438 * 10 8 7 12 12 C 1.53009 * 109.46802 * 253.46180 * 3 2 1 13 13 H 1.08999 * 109.46861 * 180.76015 * 12 3 2 14 14 C 1.52996 * 109.47235 * 60.75967 * 12 3 2 15 15 N 1.46501 * 109.47249 * 300.75658 * 12 3 2 16 16 C 1.34771 * 119.99840 * 205.00102 * 15 12 3 17 17 O 1.21271 * 120.00443 * 0.02562 * 16 15 12 18 18 C 1.50709 * 119.99751 * 179.97438 * 16 15 12 19 19 S 1.80993 * 109.46988 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99875 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99821 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00078 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00077 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99969 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47249 * 89.99402 * 24 22 20 26 26 H 1.48502 * 109.47026 * 209.99438 * 24 22 20 27 27 H 1.48500 * 109.47132 * 329.99452 * 24 22 20 28 28 H 1.08999 * 109.47220 * 55.41394 * 1 2 3 29 29 H 1.09004 * 109.47056 * 175.41658 * 1 2 3 30 30 H 1.09003 * 109.46552 * 295.41233 * 1 2 3 31 31 H 1.08004 * 119.98999 * 0.02562 * 6 5 3 32 32 H 1.08003 * 120.01371 * 180.25362 * 7 6 5 33 33 H 1.08002 * 120.00938 * 179.97438 * 10 8 7 34 34 H 1.07998 * 119.98895 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47137 * 305.30576 * 14 12 3 36 36 H 1.09004 * 109.47355 * 65.30277 * 14 12 3 37 37 H 1.09001 * 109.47418 * 185.30354 * 14 12 3 38 38 H 0.97000 * 119.99740 * 25.00322 * 15 12 3 39 39 H 1.08995 * 109.47385 * 300.00696 * 18 16 15 40 40 H 1.09007 * 109.46485 * 60.00009 * 18 16 15 41 41 H 0.97003 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2450 2.0439 0.2391 5 6 3.1074 1.3668 1.0312 6 6 3.9575 0.2899 1.2003 7 6 4.9670 0.3469 2.1423 8 6 5.1203 1.4793 2.9243 9 9 6.1038 1.5343 3.8488 10 6 4.2649 2.5553 2.7577 11 6 3.2597 2.4982 1.8111 12 6 2.5928 1.6043 -1.3829 13 1 3.0480 2.5946 -1.3791 14 6 1.4756 1.5606 -2.4273 15 7 3.6085 0.6012 -1.7121 16 6 4.5903 0.8982 -2.5863 17 8 4.6333 1.9958 -3.1001 18 6 5.6356 -0.1335 -2.9245 19 16 6.8057 0.5618 -4.1175 20 6 7.8829 -0.8165 -4.3284 21 1 7.6996 -1.7329 -3.7871 22 6 8.9665 -0.7249 -5.1910 23 7 9.7709 -1.7547 -5.3490 24 14 9.2831 0.8599 -6.1278 25 1 10.1657 1.7425 -5.3235 26 1 9.9420 0.5470 -7.4214 27 1 7.9933 1.5499 -6.3835 28 1 -0.3633 0.5833 -0.8460 29 1 -0.3633 -1.0244 -0.0821 30 1 -0.3632 0.4410 0.9283 31 1 3.8352 -0.5949 0.5930 32 1 5.6335 -0.4930 2.2714 33 1 4.3833 3.4389 3.3674 34 1 2.5927 3.3375 1.6807 35 1 0.9586 0.6029 -2.3665 36 1 0.7683 2.3679 -2.2369 37 1 1.9037 1.6798 -3.4226 38 1 3.5744 -0.2766 -1.3009 39 1 6.1681 -0.4218 -2.0183 40 1 5.1538 -1.0103 -3.3573 41 1 10.5284 -1.6905 -5.9516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271459793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:06 Heat of formation + Delta-G solvation = -104.607947 kcal Electronic energy + Delta-G solvation = -25390.212768 eV Core-core repulsion = 21503.992797 eV Total energy + Delta-G solvation = -3886.219971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.05940 -40.44229 -38.94483 -37.98437 -35.00384 -32.41997 -32.04451 -31.36490 -30.91803 -28.62240 -27.54204 -25.62322 -25.57385 -23.31478 -22.49585 -21.24598 -20.29893 -17.96292 -17.92467 -17.29299 -16.80743 -16.54094 -16.23111 -15.75409 -15.62779 -15.27936 -15.01936 -14.92765 -14.60627 -13.92448 -13.79746 -13.71044 -13.47348 -13.32689 -13.23095 -13.01370 -12.77136 -12.58276 -12.09734 -12.05081 -11.89959 -11.62337 -11.34134 -11.24959 -11.20175 -10.99216 -10.58348 -10.00758 -9.83527 -9.47438 -9.35270 -8.99740 -8.93990 -8.80304 -8.47464 -6.89017 -6.26969 -3.98236 0.84834 1.00431 2.77285 3.01917 3.14357 3.32955 3.34894 3.45278 3.51937 3.72919 4.04120 4.30494 4.34981 4.43902 4.55115 4.64281 4.70390 4.79628 4.99631 4.99965 5.02667 5.12215 5.16350 5.19307 5.22562 5.32260 5.36082 5.53993 5.63350 5.72116 5.80228 5.82724 5.88053 5.99106 6.05009 6.12425 6.13459 6.54170 6.62846 6.81254 7.68818 7.96204 8.43903 8.54699 9.19401 10.82349 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.003510 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.224420 B = 7975.124438 C = 9386.014013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.375 6.375 3 C 0.125 3.875 4 H 0.087 0.913 5 C -0.104 4.104 6 C -0.056 4.056 7 C -0.153 4.153 8 C 0.102 3.898 9 F -0.140 7.140 10 C -0.155 4.155 11 C -0.082 4.082 12 C 0.137 3.863 13 H 0.097 0.903 14 C -0.167 4.167 15 N -0.723 5.723 16 C 0.532 3.468 17 O -0.521 6.521 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.645 5.669 16.462 27.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.066 3.934 4 H 0.105 0.895 5 C -0.104 4.104 6 C -0.074 4.074 7 C -0.171 4.171 8 C 0.082 3.918 9 F -0.118 7.118 10 C -0.174 4.174 11 C -0.100 4.100 12 C 0.031 3.969 13 H 0.115 0.885 14 C -0.225 4.225 15 N -0.378 5.378 16 C 0.318 3.682 17 O -0.396 6.396 18 C -0.274 4.274 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.269 7.253 15.549 26.556 hybrid contribution 0.371 -1.015 0.520 1.199 sum -19.898 6.237 16.069 26.326 Atomic orbital electron populations 1.22941 0.80532 1.03185 1.00189 1.87895 1.20039 1.26525 1.94884 1.21239 0.93354 0.86340 0.92457 0.89542 1.19824 0.97915 0.95013 0.97666 1.20811 0.92440 0.98290 0.95901 1.21236 1.00487 0.98055 0.97368 1.17772 0.88099 0.95893 0.89996 1.91506 1.59860 1.96788 1.63695 1.21069 0.96589 0.98532 1.01194 1.20797 0.97564 0.97477 0.94162 1.21275 0.89201 0.94178 0.92274 0.88526 1.22236 0.98083 1.01915 1.00252 1.45937 1.27994 1.17123 1.46785 1.20260 0.81231 0.88622 0.78046 1.90684 1.74554 1.23320 1.51063 1.23275 0.98935 1.00758 1.04469 1.84763 1.29985 1.23288 1.53494 1.22327 1.13150 0.99564 1.31795 0.89406 1.24704 0.94442 0.96704 0.95406 1.69940 1.15336 1.29991 1.36497 0.86741 0.81262 0.83813 0.80076 1.19225 1.19969 1.15931 0.93363 0.89382 0.93966 0.84735 0.84400 0.84651 0.85010 0.91831 0.92083 0.91215 0.76318 0.88623 0.88528 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.23 101.05 1.03 1.19 16 2 O -0.37 -3.08 8.64 -35.23 -0.30 -3.38 16 3 C 0.12 1.02 2.26 -27.88 -0.06 0.96 16 4 H 0.09 0.52 7.51 -51.93 -0.39 0.13 16 5 C -0.10 -0.98 4.89 -104.62 -0.51 -1.49 16 6 C -0.06 -0.57 8.38 -39.60 -0.33 -0.90 16 7 C -0.15 -1.64 10.03 -39.51 -0.40 -2.03 16 8 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 9 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 10 C -0.16 -1.47 10.03 -39.51 -0.40 -1.87 16 11 C -0.08 -0.71 9.67 -39.59 -0.38 -1.09 16 12 C 0.14 1.46 2.39 -67.93 -0.16 1.30 16 13 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 14 C -0.17 -1.63 8.74 37.16 0.32 -1.30 16 15 N -0.72 -9.24 4.19 -53.80 -0.23 -9.47 16 16 C 0.53 9.38 7.81 -10.98 -0.09 9.29 16 17 O -0.52 -11.04 15.52 5.57 0.09 -10.96 16 18 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 19 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 20 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 24 Si 0.86 21.94 27.74 -169.99 -4.71 17.23 16 25 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 H 0.05 0.24 6.56 -51.93 -0.34 -0.10 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.13 1.25 6.36 -52.48 -0.33 0.92 16 32 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.13 0.79 8.04 -52.49 -0.42 0.36 16 35 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.40 4.43 6.40 -40.82 -0.26 4.17 16 39 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -34.48 360.32 -7.16 -41.64 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.43 Total: 2.10 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.82 Total: -9.35 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.55 Total: -35.44 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.22 Total: -14.34 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.48 -7.16 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271459793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.967 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds