Wall clock time and date at job start Tue Mar 31 2020 15:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99971 * 2 1 4 4 H 1.09000 * 109.47229 * 13.45590 * 3 2 1 5 5 C 1.50701 * 109.47309 * 133.46362 * 3 2 1 6 6 C 1.38236 * 119.97467 * 39.72246 * 5 3 2 7 7 C 1.38196 * 120.02575 * 179.76898 * 6 5 3 8 8 C 1.38465 * 119.97544 * 0.50685 * 7 6 5 9 9 F 1.35090 * 120.02557 * 179.76742 * 8 7 6 10 10 C 1.38460 * 119.94256 * 359.74900 * 8 7 6 11 11 C 1.38200 * 119.97934 * 359.97438 * 10 8 7 12 12 C 1.53009 * 109.46802 * 253.46180 * 3 2 1 13 13 H 1.08999 * 109.46861 * 180.76015 * 12 3 2 14 14 C 1.52996 * 109.47235 * 60.75967 * 12 3 2 15 15 N 1.46501 * 109.47249 * 300.75658 * 12 3 2 16 16 C 1.34771 * 119.99840 * 205.00102 * 15 12 3 17 17 O 1.21271 * 120.00443 * 0.02562 * 16 15 12 18 18 C 1.50709 * 119.99751 * 179.97438 * 16 15 12 19 19 S 1.80993 * 109.46988 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99875 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99821 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00078 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00077 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99969 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47249 * 89.99402 * 24 22 20 26 26 H 1.48502 * 109.47026 * 209.99438 * 24 22 20 27 27 H 1.48500 * 109.47132 * 329.99452 * 24 22 20 28 28 H 1.08999 * 109.47220 * 55.41394 * 1 2 3 29 29 H 1.09004 * 109.47056 * 175.41658 * 1 2 3 30 30 H 1.09003 * 109.46552 * 295.41233 * 1 2 3 31 31 H 1.08004 * 119.98999 * 0.02562 * 6 5 3 32 32 H 1.08003 * 120.01371 * 180.25362 * 7 6 5 33 33 H 1.08002 * 120.00938 * 179.97438 * 10 8 7 34 34 H 1.07998 * 119.98895 * 180.02562 * 11 10 8 35 35 H 1.08997 * 109.47137 * 305.30576 * 14 12 3 36 36 H 1.09004 * 109.47355 * 65.30277 * 14 12 3 37 37 H 1.09001 * 109.47418 * 185.30354 * 14 12 3 38 38 H 0.97000 * 119.99740 * 25.00322 * 15 12 3 39 39 H 1.08995 * 109.47385 * 300.00696 * 18 16 15 40 40 H 1.09007 * 109.46485 * 60.00009 * 18 16 15 41 41 H 0.97003 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2450 2.0439 0.2391 5 6 3.1074 1.3668 1.0312 6 6 3.9575 0.2899 1.2003 7 6 4.9670 0.3469 2.1423 8 6 5.1203 1.4793 2.9243 9 9 6.1038 1.5343 3.8488 10 6 4.2649 2.5553 2.7577 11 6 3.2597 2.4982 1.8111 12 6 2.5928 1.6043 -1.3829 13 1 3.0480 2.5946 -1.3791 14 6 1.4756 1.5606 -2.4273 15 7 3.6085 0.6012 -1.7121 16 6 4.5903 0.8982 -2.5863 17 8 4.6333 1.9958 -3.1001 18 6 5.6356 -0.1335 -2.9245 19 16 6.8057 0.5618 -4.1175 20 6 7.8829 -0.8165 -4.3284 21 1 7.6996 -1.7329 -3.7871 22 6 8.9665 -0.7249 -5.1910 23 7 9.7709 -1.7547 -5.3490 24 14 9.2831 0.8599 -6.1278 25 1 10.1657 1.7425 -5.3235 26 1 9.9420 0.5470 -7.4214 27 1 7.9933 1.5499 -6.3835 28 1 -0.3633 0.5833 -0.8460 29 1 -0.3633 -1.0244 -0.0821 30 1 -0.3632 0.4410 0.9283 31 1 3.8352 -0.5949 0.5930 32 1 5.6335 -0.4930 2.2714 33 1 4.3833 3.4389 3.3674 34 1 2.5927 3.3375 1.6807 35 1 0.9586 0.6029 -2.3665 36 1 0.7683 2.3679 -2.2369 37 1 1.9037 1.6798 -3.4226 38 1 3.5744 -0.2766 -1.3009 39 1 6.1681 -0.4218 -2.0183 40 1 5.1538 -1.0103 -3.3573 41 1 10.5284 -1.6905 -5.9516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271459793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:06 Heat of formation + Delta-G solvation = -126.888737 kcal Electronic energy + Delta-G solvation = -25391.178935 eV Core-core repulsion = 21503.992797 eV Total energy + Delta-G solvation = -3887.186139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92942 -41.33639 -40.07733 -38.70118 -36.02416 -34.67353 -33.04169 -32.09323 -31.87420 -29.97998 -28.08600 -27.84665 -26.22914 -24.06310 -23.38982 -22.12030 -21.46414 -19.91910 -18.72364 -18.18228 -17.95249 -17.38714 -17.26061 -17.08877 -16.62095 -16.43331 -16.36443 -16.02189 -15.69071 -15.39871 -14.94178 -14.70049 -14.42973 -14.38206 -14.25392 -14.19495 -13.72519 -13.58471 -13.35182 -13.24469 -13.00801 -12.87181 -12.62362 -12.55867 -12.27754 -12.06267 -11.89534 -11.85443 -11.17297 -10.96533 -10.60290 -10.53734 -10.15991 -9.99729 -9.59815 -8.99003 -8.51664 -6.22164 0.08261 0.27591 0.99178 1.31163 1.46512 1.56008 1.60795 2.20391 2.25616 2.54755 2.69280 2.83552 2.86700 3.27732 3.60407 3.74548 3.80710 3.89136 3.97956 4.14068 4.21979 4.33330 4.36779 4.39910 4.46319 4.48559 4.63840 4.67241 4.76780 4.95017 4.95548 4.98571 5.00494 5.15237 5.24635 5.33018 5.41697 5.50535 5.70608 5.89158 6.11240 6.22675 6.49901 6.93558 7.23097 8.60945 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.012044 B = 0.003510 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.224420 B = 7975.124438 C = 9386.014013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.389 6.389 3 C 0.136 3.864 4 H 0.120 0.880 5 C -0.110 4.110 6 C -0.068 4.068 7 C -0.168 4.168 8 C 0.076 3.924 9 F -0.152 7.152 10 C -0.158 4.158 11 C -0.079 4.079 12 C 0.132 3.868 13 H 0.083 0.917 14 C -0.161 4.161 15 N -0.701 5.701 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.113 4.113 19 S -0.171 6.171 20 C -0.530 4.530 21 H 0.061 0.939 22 C 0.047 3.953 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.412 0.588 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.131 7.022 17.034 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.077 3.923 4 H 0.137 0.863 5 C -0.110 4.110 6 C -0.086 4.086 7 C -0.187 4.187 8 C 0.057 3.943 9 F -0.131 7.131 10 C -0.176 4.176 11 C -0.096 4.096 12 C 0.027 3.973 13 H 0.101 0.899 14 C -0.219 4.219 15 N -0.355 5.355 16 C 0.323 3.677 17 O -0.438 6.438 18 C -0.264 4.264 19 S 0.055 5.945 20 C -0.678 4.678 21 H 0.079 0.921 22 C -0.159 4.159 23 N -0.556 5.556 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.183 1.183 27 H -0.160 1.160 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.171 0.829 34 H 0.182 0.818 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.793 8.572 16.155 29.223 hybrid contribution 1.001 -1.521 0.468 1.880 sum -21.792 7.051 16.624 28.301 Atomic orbital electron populations 1.23132 0.79055 1.04034 1.01305 1.87890 1.21668 1.26371 1.94809 1.21146 0.93597 0.87489 0.90053 0.86273 1.20084 0.97980 0.94962 0.97983 1.20952 0.92633 0.99019 0.96005 1.21370 1.01084 0.98289 0.97915 1.18094 0.88747 0.96962 0.90516 1.91469 1.60504 1.96908 1.64210 1.21366 0.96221 0.98528 1.01513 1.21180 0.97371 0.98045 0.93053 1.21520 0.88667 0.92741 0.94375 0.89869 1.22189 0.98018 1.03701 0.97989 1.45776 1.26909 1.18142 1.44701 1.19851 0.81695 0.87414 0.78723 1.90672 1.75658 1.24538 1.52980 1.23277 0.98342 1.01589 1.03181 1.84643 1.31102 1.22604 1.56128 1.22478 1.14112 0.99828 1.31351 0.92121 1.25558 0.94270 0.99755 0.96300 1.70019 1.16110 1.31910 1.37534 0.85872 0.81137 0.79972 0.79422 1.18765 1.18253 1.15970 0.92338 0.88815 0.92720 0.84337 0.84339 0.82883 0.81772 0.90746 0.89234 0.94297 0.75075 0.87425 0.87135 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.23 113.37 1.16 1.31 16 2 O -0.39 -5.11 8.64 -148.98 -1.29 -6.39 16 3 C 0.14 1.75 2.26 29.85 0.07 1.82 16 4 H 0.12 0.83 7.51 -2.39 -0.02 0.81 16 5 C -0.11 -1.79 4.89 -19.86 -0.10 -1.89 16 6 C -0.07 -1.30 8.38 22.26 0.19 -1.11 16 7 C -0.17 -3.58 10.03 22.31 0.22 -3.35 16 8 C 0.08 1.67 7.30 22.38 0.16 1.84 16 9 F -0.15 -3.76 17.27 44.97 0.78 -2.98 16 10 C -0.16 -2.72 10.03 22.31 0.22 -2.50 16 11 C -0.08 -1.13 9.67 22.26 0.22 -0.91 16 12 C 0.13 2.49 2.39 44.99 0.11 2.60 16 13 H 0.08 1.87 7.58 -2.39 -0.02 1.86 16 14 C -0.16 -2.70 8.74 71.98 0.63 -2.07 16 15 N -0.70 -16.73 4.19 -442.53 -1.86 -18.58 16 16 C 0.54 18.46 7.81 87.66 0.68 19.15 16 17 O -0.56 -23.48 15.52 -3.00 -0.05 -23.52 16 18 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 19 S -0.17 -8.75 18.55 -56.49 -1.05 -9.80 16 20 C -0.53 -31.27 10.04 67.95 0.68 -30.59 16 21 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 22 C 0.05 2.76 5.50 84.86 0.47 3.23 16 23 N -0.92 -56.46 13.97 21.65 0.30 -56.15 16 24 Si 0.91 45.41 27.74 68.60 1.90 47.31 16 25 H -0.26 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 28 H 0.06 0.33 6.56 -2.39 -0.02 0.32 16 29 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.14 2.41 6.36 -2.91 -0.02 2.39 16 32 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.16 1.22 8.04 -2.91 -0.02 1.20 16 35 H 0.07 1.09 6.32 -2.39 -0.02 1.07 16 36 H 0.09 1.00 8.14 -2.38 -0.02 0.99 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.41 8.28 6.40 -92.71 -0.59 7.69 16 39 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 41 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -75.87 360.32 4.32 -71.55 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.42 Total: 14.96 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 5.15 Total: -16.39 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.55 Total: -74.74 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.33 Total: -29.92 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.80 kcal Total: -75.87 4.32 -71.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271459793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.338 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds