Wall clock time and date at job start Tue Mar 31 2020 15:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99767 * 2 1 4 4 H 1.08999 * 109.46750 * 326.24561 * 3 2 1 5 5 C 1.50698 * 109.47017 * 86.24405 * 3 2 1 6 6 C 1.38247 * 119.97563 * 219.99866 * 5 3 2 7 7 C 1.38189 * 120.02699 * 179.97438 * 6 5 3 8 8 C 1.38461 * 119.97894 * 0.24246 * 7 6 5 9 9 F 1.35090 * 120.03028 * 179.72427 * 8 7 6 10 10 C 1.38461 * 119.94344 * 359.48349 * 8 7 6 11 11 C 1.38201 * 119.97410 * 0.53083 * 10 8 7 12 12 C 1.53000 * 109.47124 * 206.24451 * 3 2 1 13 13 H 1.09000 * 109.47209 * 185.93924 * 12 3 2 14 14 C 1.52999 * 109.47207 * 305.93910 * 12 3 2 15 15 N 1.46498 * 109.46958 * 65.94015 * 12 3 2 16 16 C 1.34782 * 119.99736 * 153.91727 * 15 12 3 17 17 O 1.21281 * 119.99958 * 0.02562 * 16 15 12 18 18 C 1.50701 * 119.99876 * 179.97438 * 16 15 12 19 19 S 1.80996 * 109.46936 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99938 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00053 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00261 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00346 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99699 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47540 * 89.99778 * 24 22 20 26 26 H 1.48508 * 109.47089 * 209.99757 * 24 22 20 27 27 H 1.48496 * 109.47265 * 329.99597 * 24 22 20 28 28 H 1.08996 * 109.47548 * 304.87614 * 1 2 3 29 29 H 1.09001 * 109.47191 * 64.88281 * 1 2 3 30 30 H 1.09002 * 109.46749 * 184.87640 * 1 2 3 31 31 H 1.08001 * 119.98604 * 359.97438 * 6 5 3 32 32 H 1.08002 * 120.01615 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.01640 * 180.26303 * 10 8 7 34 34 H 1.07999 * 119.99002 * 179.74028 * 11 10 8 35 35 H 1.09003 * 109.47231 * 179.97438 * 14 12 3 36 36 H 1.09000 * 109.47095 * 300.00575 * 14 12 3 37 37 H 1.09001 * 109.46662 * 60.00299 * 14 12 3 38 38 H 0.96998 * 120.00399 * 333.92071 * 15 12 3 39 39 H 1.08997 * 109.47237 * 300.00513 * 18 16 15 40 40 H 1.08999 * 109.47290 * 60.00371 * 18 16 15 41 41 H 0.96995 * 119.99969 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3773 1.9849 -0.5710 5 6 2.1294 1.8023 1.4178 6 6 1.8525 3.1244 1.7120 7 6 1.9610 3.5809 3.0118 8 6 2.3521 2.7149 4.0189 9 9 2.4639 3.1614 5.2889 10 6 2.6238 1.3896 3.7240 11 6 2.5149 0.9354 2.4233 12 6 3.3996 1.2453 -0.6379 13 1 3.8852 2.2165 -0.5433 14 6 4.2411 0.1830 0.0722 15 7 3.2714 0.8994 -2.0557 16 6 4.2218 1.2822 -2.9313 17 8 5.1833 1.9127 -2.5454 18 6 4.0902 0.9259 -4.3896 19 16 5.5126 1.5766 -5.3003 20 6 5.1107 1.0302 -6.9266 21 1 4.2033 0.4706 -7.0994 22 6 5.9596 1.3200 -7.9858 23 7 5.6591 0.9123 -9.2007 24 14 7.5288 2.2885 -7.6870 25 1 8.6382 1.3509 -7.3785 26 1 7.8662 3.0717 -8.9028 27 1 7.3294 3.2131 -6.5422 28 1 -0.3634 0.5876 0.8430 29 1 -0.3634 0.4362 -0.9305 30 1 -0.3633 -1.0240 0.0874 31 1 1.5512 3.8007 0.9258 32 1 1.7450 4.6139 3.2415 33 1 2.9248 0.7121 4.5093 34 1 2.7308 -0.0973 2.1923 35 1 5.2308 0.1397 -0.3825 36 1 4.3364 0.4403 1.1271 37 1 3.7554 -0.7882 -0.0225 38 1 2.5025 0.3949 -2.3642 39 1 4.0544 -0.1581 -4.4970 40 1 3.1739 1.3609 -4.7887 41 1 6.2523 1.1151 -9.9409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271459798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:09 Heat of formation + Delta-G solvation = -105.211878 kcal Electronic energy + Delta-G solvation = -24796.339146 eV Core-core repulsion = 20910.092986 eV Total energy + Delta-G solvation = -3886.246160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.25824 -40.49310 -39.15403 -37.87857 -35.16389 -32.45199 -32.38209 -31.63033 -30.42321 -28.50559 -27.47162 -26.01698 -25.60279 -23.41385 -22.73316 -21.02159 -20.35208 -18.12699 -17.92949 -17.28385 -16.99738 -16.63393 -16.08948 -15.97486 -15.90733 -15.08209 -15.05519 -14.92402 -14.79577 -14.04096 -14.00941 -13.84227 -13.60776 -13.35518 -13.30664 -12.98827 -12.79386 -12.56812 -12.20145 -12.07695 -11.90000 -11.53162 -11.27827 -11.25814 -11.10734 -11.00797 -10.61156 -10.17300 -9.85499 -9.54361 -9.46941 -9.15754 -9.00343 -8.87325 -8.49924 -6.91630 -6.28935 -4.00554 0.66207 0.82687 2.74552 2.95770 3.08833 3.29763 3.33252 3.36255 3.50528 3.64593 3.86632 4.29515 4.31737 4.33373 4.48158 4.56062 4.66314 4.76011 4.87791 4.98627 5.02967 5.04208 5.10144 5.21845 5.29014 5.35848 5.40773 5.49082 5.54384 5.68300 5.71340 5.77132 5.80555 5.94382 6.00413 6.02371 6.23937 6.45367 6.56176 6.73830 7.63003 7.94178 8.41786 8.49285 9.17299 10.80289 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.002372 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.712968 B =11803.559921 C =12436.758983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.124 3.876 4 H 0.079 0.921 5 C -0.123 4.123 6 C -0.078 4.078 7 C -0.156 4.156 8 C 0.101 3.899 9 F -0.141 7.141 10 C -0.158 4.158 11 C -0.061 4.061 12 C 0.156 3.844 13 H 0.100 0.900 14 C -0.165 4.165 15 N -0.730 5.730 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.402 0.598 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.823 0.190 25.684 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.289 6.289 3 C 0.066 3.934 4 H 0.097 0.903 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.174 4.174 8 C 0.082 3.918 9 F -0.119 7.119 10 C -0.177 4.177 11 C -0.079 4.079 12 C 0.051 3.949 13 H 0.118 0.882 14 C -0.223 4.223 15 N -0.384 5.384 16 C 0.318 3.682 17 O -0.394 6.394 18 C -0.274 4.274 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.052 1.087 26.170 28.429 hybrid contribution -1.047 -0.331 -0.480 1.198 sum -12.099 0.756 25.690 28.407 Atomic orbital electron populations 1.22841 0.80760 1.03012 1.00273 1.87965 1.19864 1.26327 1.94783 1.21250 0.95221 0.85525 0.91452 0.90326 1.20296 1.01842 0.94175 0.96100 1.20934 0.97715 0.95011 0.95939 1.21120 1.03387 1.00388 0.92550 1.17795 1.01605 0.93269 0.79142 1.91504 1.93661 1.89793 1.36963 1.21204 1.03901 0.94309 0.98296 1.20972 0.95485 1.00591 0.90858 1.20900 0.92839 1.00599 0.80609 0.88184 1.22216 1.00489 0.99323 1.00264 1.45971 1.26230 1.59100 1.07084 1.20291 0.82004 0.78398 0.87480 1.90699 1.30467 1.38718 1.79496 1.23276 1.05303 1.05257 0.93597 1.84785 1.28039 1.73569 1.05149 1.22319 1.12515 1.41421 0.90609 0.89389 1.24719 0.97865 0.94712 0.94058 1.69937 1.37813 1.44642 0.99321 0.86732 0.83612 0.81727 0.79756 1.19213 1.19973 1.15914 0.93936 0.93653 0.89362 0.84784 0.84564 0.84591 0.84043 0.91775 0.91602 0.91406 0.76379 0.88452 0.88517 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.79 101.05 1.09 1.26 16 2 O -0.37 -3.01 8.53 -35.23 -0.30 -3.31 16 3 C 0.12 1.03 2.20 -27.88 -0.06 0.96 16 4 H 0.08 0.58 7.74 -51.93 -0.40 0.18 16 5 C -0.12 -0.98 4.61 -104.62 -0.48 -1.47 16 6 C -0.08 -0.58 9.67 -39.60 -0.38 -0.96 16 7 C -0.16 -1.20 10.03 -39.52 -0.40 -1.60 16 8 C 0.10 0.88 7.30 -39.42 -0.29 0.59 16 9 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 10 C -0.16 -1.24 10.03 -39.51 -0.40 -1.63 16 11 C -0.06 -0.48 7.37 -39.59 -0.29 -0.77 16 12 C 0.16 1.71 2.44 -67.93 -0.17 1.54 16 13 H 0.10 1.26 7.54 -51.93 -0.39 0.87 16 14 C -0.16 -1.79 8.49 37.16 0.32 -1.47 16 15 N -0.73 -9.06 5.05 -53.81 -0.27 -9.34 16 16 C 0.53 9.18 7.82 -10.98 -0.09 9.09 16 17 O -0.52 -10.88 15.51 5.56 0.09 -10.80 16 18 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 19 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.20 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 24 Si 0.86 21.73 27.74 -169.99 -4.72 17.02 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 28 H 0.04 0.24 7.99 -51.93 -0.42 -0.18 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.78 8.04 -52.49 -0.42 0.36 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.14 1.02 6.84 -52.49 -0.36 0.66 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.62 5.58 -51.93 -0.29 0.33 16 37 H 0.07 0.70 7.54 -51.93 -0.39 0.31 16 38 H 0.40 4.09 8.42 -40.82 -0.34 3.75 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -33.68 362.86 -7.17 -40.85 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.55 Total: 1.22 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.71 Total: -8.53 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.50 Total: -35.06 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.21 Total: -14.11 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.72 Total: 17.02 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.68 -7.17 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271459798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.362 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds