Wall clock time and date at job start Tue Mar 31 2020 15:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99767 * 2 1 4 4 H 1.08999 * 109.46750 * 326.24561 * 3 2 1 5 5 C 1.50698 * 109.47017 * 86.24405 * 3 2 1 6 6 C 1.38247 * 119.97563 * 219.99866 * 5 3 2 7 7 C 1.38189 * 120.02699 * 179.97438 * 6 5 3 8 8 C 1.38461 * 119.97894 * 0.24246 * 7 6 5 9 9 F 1.35090 * 120.03028 * 179.72427 * 8 7 6 10 10 C 1.38461 * 119.94344 * 359.48349 * 8 7 6 11 11 C 1.38201 * 119.97410 * 0.53083 * 10 8 7 12 12 C 1.53000 * 109.47124 * 206.24451 * 3 2 1 13 13 H 1.09000 * 109.47209 * 185.93924 * 12 3 2 14 14 C 1.52999 * 109.47207 * 305.93910 * 12 3 2 15 15 N 1.46498 * 109.46958 * 65.94015 * 12 3 2 16 16 C 1.34782 * 119.99736 * 153.91727 * 15 12 3 17 17 O 1.21281 * 119.99958 * 0.02562 * 16 15 12 18 18 C 1.50701 * 119.99876 * 179.97438 * 16 15 12 19 19 S 1.80996 * 109.46936 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99938 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00053 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00261 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00346 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99699 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47540 * 89.99778 * 24 22 20 26 26 H 1.48508 * 109.47089 * 209.99757 * 24 22 20 27 27 H 1.48496 * 109.47265 * 329.99597 * 24 22 20 28 28 H 1.08996 * 109.47548 * 304.87614 * 1 2 3 29 29 H 1.09001 * 109.47191 * 64.88281 * 1 2 3 30 30 H 1.09002 * 109.46749 * 184.87640 * 1 2 3 31 31 H 1.08001 * 119.98604 * 359.97438 * 6 5 3 32 32 H 1.08002 * 120.01615 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.01640 * 180.26303 * 10 8 7 34 34 H 1.07999 * 119.99002 * 179.74028 * 11 10 8 35 35 H 1.09003 * 109.47231 * 179.97438 * 14 12 3 36 36 H 1.09000 * 109.47095 * 300.00575 * 14 12 3 37 37 H 1.09001 * 109.46662 * 60.00299 * 14 12 3 38 38 H 0.96998 * 120.00399 * 333.92071 * 15 12 3 39 39 H 1.08997 * 109.47237 * 300.00513 * 18 16 15 40 40 H 1.08999 * 109.47290 * 60.00371 * 18 16 15 41 41 H 0.96995 * 119.99969 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3773 1.9849 -0.5710 5 6 2.1294 1.8023 1.4178 6 6 1.8525 3.1244 1.7120 7 6 1.9610 3.5809 3.0118 8 6 2.3521 2.7149 4.0189 9 9 2.4639 3.1614 5.2889 10 6 2.6238 1.3896 3.7240 11 6 2.5149 0.9354 2.4233 12 6 3.3996 1.2453 -0.6379 13 1 3.8852 2.2165 -0.5433 14 6 4.2411 0.1830 0.0722 15 7 3.2714 0.8994 -2.0557 16 6 4.2218 1.2822 -2.9313 17 8 5.1833 1.9127 -2.5454 18 6 4.0902 0.9259 -4.3896 19 16 5.5126 1.5766 -5.3003 20 6 5.1107 1.0302 -6.9266 21 1 4.2033 0.4706 -7.0994 22 6 5.9596 1.3200 -7.9858 23 7 5.6591 0.9123 -9.2007 24 14 7.5288 2.2885 -7.6870 25 1 8.6382 1.3509 -7.3785 26 1 7.8662 3.0717 -8.9028 27 1 7.3294 3.2131 -6.5422 28 1 -0.3634 0.5876 0.8430 29 1 -0.3634 0.4362 -0.9305 30 1 -0.3633 -1.0240 0.0874 31 1 1.5512 3.8007 0.9258 32 1 1.7450 4.6139 3.2415 33 1 2.9248 0.7121 4.5093 34 1 2.7308 -0.0973 2.1923 35 1 5.2308 0.1397 -0.3825 36 1 4.3364 0.4403 1.1271 37 1 3.7554 -0.7882 -0.0225 38 1 2.5025 0.3949 -2.3642 39 1 4.0544 -0.1581 -4.4970 40 1 3.1739 1.3609 -4.7887 41 1 6.2523 1.1151 -9.9409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271459798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:08 Heat of formation + Delta-G solvation = -126.977989 kcal Electronic energy + Delta-G solvation = -24797.282995 eV Core-core repulsion = 20910.092986 eV Total energy + Delta-G solvation = -3887.190009 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.93247 -41.30610 -40.26649 -38.54792 -36.19055 -34.66025 -33.35288 -32.20688 -31.44316 -29.73354 -28.06090 -27.83686 -26.63042 -24.00512 -23.55866 -21.84630 -21.53328 -19.90398 -18.73076 -18.10525 -17.88139 -17.73769 -17.10246 -17.00799 -16.66012 -16.60939 -16.33161 -15.87142 -15.64566 -15.49643 -14.93532 -14.68154 -14.57507 -14.49120 -14.34962 -14.17124 -13.82375 -13.50375 -13.33543 -13.14988 -12.99809 -12.86851 -12.71289 -12.54444 -12.18139 -12.05238 -11.86198 -11.77313 -11.16083 -11.00839 -10.71394 -10.51759 -10.19928 -10.06475 -9.61158 -8.97810 -8.50437 -6.20808 0.04305 0.25741 1.00325 1.32425 1.47812 1.56615 1.58510 2.19183 2.26399 2.54910 2.71243 2.73537 2.87837 3.26162 3.62649 3.71429 3.79523 3.93273 3.97992 4.01972 4.23853 4.32552 4.34164 4.43067 4.48966 4.50518 4.62238 4.66018 4.78114 4.93578 4.95191 4.96945 5.00014 5.14133 5.23483 5.32215 5.42999 5.48271 5.71994 5.87686 6.12904 6.16827 6.48847 6.94888 7.21113 8.61895 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.002372 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.712968 B =11803.559921 C =12436.758983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.381 6.381 3 C 0.136 3.864 4 H 0.092 0.908 5 C -0.128 4.128 6 C -0.080 4.080 7 C -0.159 4.159 8 C 0.083 3.917 9 F -0.150 7.150 10 C -0.161 4.161 11 C -0.065 4.065 12 C 0.153 3.847 13 H 0.086 0.914 14 C -0.158 4.158 15 N -0.705 5.705 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.111 4.111 19 S -0.175 6.175 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.260 1.260 27 H -0.236 1.236 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.416 0.584 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.752 0.335 27.027 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.300 6.300 3 C 0.077 3.923 4 H 0.110 0.890 5 C -0.129 4.129 6 C -0.098 4.098 7 C -0.177 4.177 8 C 0.064 3.936 9 F -0.129 7.129 10 C -0.180 4.180 11 C -0.083 4.083 12 C 0.049 3.951 13 H 0.104 0.896 14 C -0.216 4.216 15 N -0.359 5.359 16 C 0.324 3.676 17 O -0.438 6.438 18 C -0.262 4.262 19 S 0.052 5.948 20 C -0.675 4.675 21 H 0.081 0.919 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.160 1.160 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.169 0.831 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.253 0.747 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.033 1.207 27.531 30.070 hybrid contribution -0.915 -0.460 -0.794 1.296 sum -12.948 0.746 26.737 29.717 Atomic orbital electron populations 1.22984 0.79452 1.03911 1.00892 1.87944 1.21212 1.25982 1.94853 1.21043 0.93608 0.86128 0.91529 0.88977 1.20333 1.02151 0.94519 0.95883 1.21148 0.97266 0.95084 0.96267 1.21331 1.02900 1.01033 0.92485 1.18054 1.02559 0.93957 0.79064 1.91479 1.93851 1.89934 1.37587 1.21374 1.03531 0.94283 0.98772 1.21066 0.95480 1.00900 0.90820 1.21008 0.94833 0.99859 0.79423 0.89647 1.22151 0.98930 0.99674 1.00883 1.45741 1.25209 1.57652 1.07280 1.19928 0.82329 0.78262 0.87109 1.90692 1.32332 1.40918 1.79879 1.23269 1.02854 1.05899 0.94185 1.84708 1.31967 1.74316 1.03853 1.22467 1.11566 1.40812 0.92694 0.91916 1.25569 1.00893 0.95703 0.93915 1.70015 1.39281 1.45996 1.00232 0.85867 0.79893 0.80567 0.80044 1.18812 1.18416 1.15962 0.93552 0.92831 0.88366 0.83078 0.83233 0.83354 0.83462 0.94472 0.90149 0.90687 0.74666 0.87022 0.86693 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.79 113.37 1.22 1.44 16 2 O -0.38 -5.10 8.53 -148.98 -1.27 -6.37 16 3 C 0.14 1.89 2.20 29.85 0.07 1.96 16 4 H 0.09 1.07 7.74 -2.39 -0.02 1.05 16 5 C -0.13 -1.76 4.61 -19.86 -0.09 -1.85 16 6 C -0.08 -1.01 9.67 22.26 0.22 -0.80 16 7 C -0.16 -2.19 10.03 22.31 0.22 -1.97 16 8 C 0.08 1.34 7.30 22.38 0.16 1.50 16 9 F -0.15 -2.77 17.27 44.97 0.78 -1.99 16 10 C -0.16 -2.28 10.03 22.31 0.22 -2.05 16 11 C -0.06 -0.89 7.37 22.26 0.16 -0.72 16 12 C 0.15 3.09 2.44 44.99 0.11 3.20 16 13 H 0.09 2.05 7.54 -2.39 -0.02 2.03 16 14 C -0.16 -3.21 8.49 71.98 0.61 -2.60 16 15 N -0.71 -16.04 5.05 -442.53 -2.24 -18.27 16 16 C 0.54 17.83 7.82 87.66 0.69 18.51 16 17 O -0.56 -23.18 15.51 -3.03 -0.05 -23.23 16 18 C -0.11 -4.08 6.16 71.24 0.44 -3.64 16 19 S -0.17 -8.73 18.55 -56.49 -1.05 -9.78 16 20 C -0.53 -30.49 10.04 67.95 0.68 -29.80 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 22 C 0.04 2.60 5.50 84.86 0.47 3.07 16 23 N -0.92 -55.66 13.97 21.65 0.30 -55.36 16 24 Si 0.91 44.85 27.74 68.60 1.90 46.75 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.24 -11.51 6.74 99.48 0.67 -10.84 16 28 H 0.05 0.39 7.99 -2.39 -0.02 0.37 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.15 1.35 8.04 -2.91 -0.02 1.32 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 1.81 6.84 -2.91 -0.02 1.79 16 35 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.39 5.58 -2.39 -0.01 1.38 16 37 H 0.07 1.41 7.54 -2.39 -0.02 1.39 16 38 H 0.42 7.26 8.42 -92.71 -0.78 6.48 16 39 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 40 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 41 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -72.78 362.86 3.80 -68.98 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.24 Total: 13.04 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.18 Total: -13.76 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.93 Total: -73.63 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.32 Total: -29.60 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -72.78 3.80 -68.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271459798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.999 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds