Wall clock time and date at job start Tue Mar 31 2020 15:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99986 * 2 1 4 4 H 1.08994 * 109.47086 * 328.79250 * 3 2 1 5 5 C 1.50698 * 109.46675 * 88.79250 * 3 2 1 6 6 C 1.38218 * 120.01661 * 25.00244 * 5 3 2 7 7 C 1.38223 * 120.02578 * 179.97438 * 6 5 3 8 8 C 1.38269 * 120.05272 * 0.02562 * 7 6 5 9 9 C 1.38173 * 120.02627 * 0.02562 * 8 7 6 10 10 C 1.38443 * 120.00957 * 204.72248 * 5 3 2 11 11 F 1.35097 * 120.02446 * 0.02562 * 10 5 3 12 12 C 1.53002 * 109.47157 * 208.79080 * 3 2 1 13 13 H 1.08992 * 109.46972 * 179.38120 * 12 3 2 14 14 C 1.52992 * 109.47100 * 59.37715 * 12 3 2 15 15 N 1.46501 * 109.46877 * 299.37813 * 12 3 2 16 16 C 1.34781 * 119.99939 * 204.99984 * 15 12 3 17 17 O 1.21281 * 119.99476 * 0.02562 * 16 15 12 18 18 C 1.50693 * 120.00103 * 180.02562 * 16 15 12 19 19 S 1.81007 * 109.47215 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99835 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00824 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99610 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00361 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47183 * 89.99573 * 24 22 20 26 26 H 1.48498 * 109.47270 * 210.00267 * 24 22 20 27 27 H 1.48509 * 109.46667 * 329.99856 * 24 22 20 28 28 H 1.09004 * 109.47439 * 295.71219 * 1 2 3 29 29 H 1.08999 * 109.46873 * 175.71380 * 1 2 3 30 30 H 1.08997 * 109.47411 * 55.71510 * 1 2 3 31 31 H 1.08000 * 119.98973 * 359.94714 * 6 5 3 32 32 H 1.07999 * 119.97440 * 180.02562 * 7 6 5 33 33 H 1.07996 * 119.98759 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.01599 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47855 * 294.67790 * 14 12 3 36 36 H 1.09008 * 109.47060 * 54.67969 * 14 12 3 37 37 H 1.09001 * 109.47253 * 174.67452 * 14 12 3 38 38 H 0.96998 * 120.00195 * 25.00231 * 15 12 3 39 39 H 1.08994 * 109.47262 * 300.00228 * 18 16 15 40 40 H 1.09006 * 109.47287 * 60.00406 * 18 16 15 41 41 H 0.97002 * 119.99516 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3550 1.9949 -0.5324 5 6 2.1871 1.7765 1.4205 6 6 2.3074 0.8557 2.4443 7 6 2.4702 1.2875 3.7473 8 6 2.5124 2.6407 4.0281 9 6 2.3913 3.5630 3.0065 10 6 2.2350 3.1316 1.6998 11 9 2.1227 4.0324 0.6993 12 6 3.3725 1.2572 -0.6947 13 1 3.8109 2.2550 -0.7045 14 6 3.1948 0.7641 -2.1321 15 7 4.2579 0.3419 0.0296 16 6 5.5948 0.4930 -0.0505 17 8 6.0647 1.3871 -0.7219 18 6 6.5055 -0.4488 0.6941 19 16 8.2293 0.0104 0.3877 20 6 9.0486 -1.2184 1.3485 21 1 8.4721 -1.9507 1.8940 22 6 10.4353 -1.2446 1.4052 23 7 11.1381 -0.3517 0.7407 24 14 11.3041 -2.5477 2.4232 25 1 11.5636 -3.7425 1.5806 26 1 12.5926 -2.0063 2.9249 27 1 10.4464 -2.9302 3.5737 28 1 -0.3634 0.4459 0.9259 29 1 -0.3633 -1.0248 -0.0768 30 1 -0.3634 0.5789 -0.8491 31 1 2.2737 -0.2015 2.2263 32 1 2.5645 0.5674 4.5465 33 1 2.6392 2.9769 5.0466 34 1 2.4239 4.6200 3.2261 35 1 2.8454 -0.2682 -2.1216 36 1 2.4633 1.3902 -2.6431 37 1 4.1492 0.8194 -2.6558 38 1 3.8819 -0.3729 0.5668 39 1 6.2971 -0.3873 1.7621 40 1 6.3346 -1.4685 0.3487 41 1 12.1071 -0.3698 0.7806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271824984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:17 Heat of formation + Delta-G solvation = -105.646344 kcal Electronic energy + Delta-G solvation = -25675.337637 eV Core-core repulsion = 21789.072637 eV Total energy + Delta-G solvation = -3886.265000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.10775 -40.22786 -38.86648 -37.90552 -35.04632 -32.39726 -32.08698 -31.12345 -30.60062 -28.46667 -27.45494 -25.87602 -25.44589 -22.96318 -22.51309 -21.18448 -20.13098 -17.96914 -17.86641 -17.29309 -16.69460 -16.45700 -16.11269 -15.79832 -15.51226 -15.09883 -14.85052 -14.77412 -14.70134 -14.28350 -13.93094 -13.54646 -13.37270 -13.14780 -12.96925 -12.78393 -12.52047 -12.46369 -12.09836 -11.88194 -11.72126 -11.66238 -11.21999 -11.15589 -11.03882 -10.98920 -10.73152 -10.08808 -9.77922 -9.32191 -9.18738 -9.03876 -8.92291 -8.76367 -8.18703 -6.45488 -6.18466 -3.88296 0.89572 0.99458 3.05014 3.17150 3.24344 3.27284 3.31408 3.34303 3.39932 3.81178 4.05564 4.22100 4.23715 4.55493 4.63058 4.69643 4.87557 5.02901 5.04887 5.08830 5.15561 5.16674 5.23261 5.32174 5.37271 5.39763 5.59337 5.64840 5.77372 5.81605 5.85545 5.95595 6.01345 6.06076 6.18959 6.20177 6.28929 6.64116 6.65299 6.84924 7.62774 7.83866 8.38518 8.71299 9.26834 10.88981 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.003227 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.252096 B = 8674.734873 C = 9237.304666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.126 3.874 4 H 0.085 0.915 5 C -0.145 4.145 6 C -0.068 4.068 7 C -0.129 4.129 8 C -0.089 4.089 9 C -0.154 4.154 10 C 0.106 3.894 11 F -0.138 7.138 12 C 0.157 3.843 13 H 0.098 0.902 14 C -0.160 4.160 15 N -0.725 5.725 16 C 0.533 3.467 17 O -0.520 6.520 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.495 2.975 3.336 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.067 3.933 4 H 0.103 0.897 5 C -0.146 4.146 6 C -0.086 4.086 7 C -0.147 4.147 8 C -0.107 4.107 9 C -0.173 4.173 10 C 0.086 3.914 11 F -0.116 7.116 12 C 0.051 3.949 13 H 0.116 0.884 14 C -0.218 4.218 15 N -0.380 5.380 16 C 0.319 3.681 17 O -0.394 6.394 18 C -0.302 4.302 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.425 4.413 2.118 24.911 hybrid contribution -0.369 -1.749 1.610 2.406 sum -24.794 2.664 3.729 25.214 Atomic orbital electron populations 1.22840 0.80714 1.02952 1.00193 1.87901 1.19943 1.26293 1.94693 1.21245 0.95370 0.85594 0.91076 0.89690 1.20337 1.04917 0.91865 0.97477 1.20881 0.96383 0.99906 0.91479 1.21262 1.00607 0.95978 0.96901 1.21060 0.97665 0.92878 0.99081 1.21135 1.03770 1.01246 0.91128 1.17512 1.02773 0.85901 0.85189 1.91495 1.93379 1.66872 1.59888 1.20941 0.86767 0.95791 0.91388 0.88379 1.22120 1.02618 1.01993 0.95119 1.45930 1.05610 1.34372 1.52075 1.20293 0.81877 0.84997 0.80900 1.90692 1.75176 1.33242 1.40286 1.23512 1.02998 1.01254 1.02462 1.85387 0.89787 1.42905 1.65248 1.22875 0.93963 1.17121 1.34333 0.90972 1.24985 0.96380 0.96428 0.95769 1.70025 1.06797 1.33698 1.39813 0.86180 0.78749 0.80752 0.79895 1.20281 1.20783 1.19707 0.93979 0.89302 0.93786 0.84480 0.85158 0.85002 0.84694 0.91545 0.92206 0.91357 0.76490 0.89389 0.89284 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.42 8.13 -35.23 -0.29 -3.71 16 3 C 0.13 1.30 1.85 -27.88 -0.05 1.24 16 4 H 0.09 0.79 7.40 -51.93 -0.38 0.41 16 5 C -0.14 -1.57 4.66 -104.55 -0.49 -2.06 16 6 C -0.07 -0.67 8.62 -39.59 -0.34 -1.01 16 7 C -0.13 -1.17 10.04 -39.58 -0.40 -1.57 16 8 C -0.09 -0.80 10.04 -39.59 -0.40 -1.20 16 9 C -0.15 -1.56 10.03 -39.51 -0.40 -1.96 16 10 C 0.11 1.22 7.24 -39.41 -0.29 0.94 16 11 F -0.14 -1.69 16.57 2.25 0.04 -1.65 16 12 C 0.16 2.03 2.41 -67.93 -0.16 1.87 16 13 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 14 C -0.16 -1.92 9.25 37.15 0.34 -1.58 16 15 N -0.73 -10.49 4.50 -53.81 -0.24 -10.73 16 16 C 0.53 10.32 7.81 -10.99 -0.09 10.23 16 17 O -0.52 -12.07 15.52 5.56 0.09 -11.98 16 18 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 24 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.26 7.99 -51.93 -0.41 -0.16 16 31 H 0.14 1.20 7.13 -52.49 -0.37 0.83 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 36 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.40 4.96 7.42 -40.82 -0.30 4.66 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -34.70 367.85 -7.74 -42.43 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.63 Total: 2.92 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -0.75 Total: -9.82 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.49 Total: -36.41 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.20 Total: -15.69 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.70 -7.74 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271824984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.212 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds