Wall clock time and date at job start Tue Mar 31 2020 15:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99986 * 2 1 4 4 H 1.08994 * 109.47086 * 328.79250 * 3 2 1 5 5 C 1.50698 * 109.46675 * 88.79250 * 3 2 1 6 6 C 1.38218 * 120.01661 * 25.00244 * 5 3 2 7 7 C 1.38223 * 120.02578 * 179.97438 * 6 5 3 8 8 C 1.38269 * 120.05272 * 0.02562 * 7 6 5 9 9 C 1.38173 * 120.02627 * 0.02562 * 8 7 6 10 10 C 1.38443 * 120.00957 * 204.72248 * 5 3 2 11 11 F 1.35097 * 120.02446 * 0.02562 * 10 5 3 12 12 C 1.53002 * 109.47157 * 208.79080 * 3 2 1 13 13 H 1.08992 * 109.46972 * 179.38120 * 12 3 2 14 14 C 1.52992 * 109.47100 * 59.37715 * 12 3 2 15 15 N 1.46501 * 109.46877 * 299.37813 * 12 3 2 16 16 C 1.34781 * 119.99939 * 204.99984 * 15 12 3 17 17 O 1.21281 * 119.99476 * 0.02562 * 16 15 12 18 18 C 1.50693 * 120.00103 * 180.02562 * 16 15 12 19 19 S 1.81007 * 109.47215 * 179.97438 * 18 16 15 20 20 C 1.76196 * 99.99835 * 180.02562 * 19 18 16 21 21 H 1.07994 * 120.00824 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99842 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99610 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00361 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47183 * 89.99573 * 24 22 20 26 26 H 1.48498 * 109.47270 * 210.00267 * 24 22 20 27 27 H 1.48509 * 109.46667 * 329.99856 * 24 22 20 28 28 H 1.09004 * 109.47439 * 295.71219 * 1 2 3 29 29 H 1.08999 * 109.46873 * 175.71380 * 1 2 3 30 30 H 1.08997 * 109.47411 * 55.71510 * 1 2 3 31 31 H 1.08000 * 119.98973 * 359.94714 * 6 5 3 32 32 H 1.07999 * 119.97440 * 180.02562 * 7 6 5 33 33 H 1.07996 * 119.98759 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.01599 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.47855 * 294.67790 * 14 12 3 36 36 H 1.09008 * 109.47060 * 54.67969 * 14 12 3 37 37 H 1.09001 * 109.47253 * 174.67452 * 14 12 3 38 38 H 0.96998 * 120.00195 * 25.00231 * 15 12 3 39 39 H 1.08994 * 109.47262 * 300.00228 * 18 16 15 40 40 H 1.09006 * 109.47287 * 60.00406 * 18 16 15 41 41 H 0.97002 * 119.99516 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3550 1.9949 -0.5324 5 6 2.1871 1.7765 1.4205 6 6 2.3074 0.8557 2.4443 7 6 2.4702 1.2875 3.7473 8 6 2.5124 2.6407 4.0281 9 6 2.3913 3.5630 3.0065 10 6 2.2350 3.1316 1.6998 11 9 2.1227 4.0324 0.6993 12 6 3.3725 1.2572 -0.6947 13 1 3.8109 2.2550 -0.7045 14 6 3.1948 0.7641 -2.1321 15 7 4.2579 0.3419 0.0296 16 6 5.5948 0.4930 -0.0505 17 8 6.0647 1.3871 -0.7219 18 6 6.5055 -0.4488 0.6941 19 16 8.2293 0.0104 0.3877 20 6 9.0486 -1.2184 1.3485 21 1 8.4721 -1.9507 1.8940 22 6 10.4353 -1.2446 1.4052 23 7 11.1381 -0.3517 0.7407 24 14 11.3041 -2.5477 2.4232 25 1 11.5636 -3.7425 1.5806 26 1 12.5926 -2.0063 2.9249 27 1 10.4464 -2.9302 3.5737 28 1 -0.3634 0.4459 0.9259 29 1 -0.3633 -1.0248 -0.0768 30 1 -0.3634 0.5789 -0.8491 31 1 2.2737 -0.2015 2.2263 32 1 2.5645 0.5674 4.5465 33 1 2.6392 2.9769 5.0466 34 1 2.4239 4.6200 3.2261 35 1 2.8454 -0.2682 -2.1216 36 1 2.4633 1.3902 -2.6431 37 1 4.1492 0.8194 -2.6558 38 1 3.8819 -0.3729 0.5668 39 1 6.2971 -0.3873 1.7621 40 1 6.3346 -1.4685 0.3487 41 1 12.1071 -0.3698 0.7806 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271824984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:16 Heat of formation + Delta-G solvation = -127.885826 kcal Electronic energy + Delta-G solvation = -25676.302013 eV Core-core repulsion = 21789.072637 eV Total energy + Delta-G solvation = -3887.229376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.98160 -41.24266 -40.08352 -38.70297 -36.21861 -34.57186 -33.15583 -32.13867 -31.42206 -29.96733 -28.12401 -27.64594 -26.58871 -23.76832 -23.45555 -22.18666 -21.45833 -19.86217 -18.75591 -18.21716 -17.95773 -17.38553 -17.21141 -16.86826 -16.67275 -16.40933 -16.37572 -15.93201 -15.73634 -15.52447 -15.06949 -14.63035 -14.58331 -14.39310 -14.15247 -13.98426 -13.57553 -13.39792 -13.22302 -13.15111 -12.92892 -12.87394 -12.61058 -12.55676 -12.36160 -12.14876 -11.94127 -11.71337 -11.13048 -10.93459 -10.78072 -10.26212 -10.15051 -9.94360 -9.65053 -8.65364 -8.33311 -6.11331 0.13055 0.24434 1.27589 1.43505 1.47737 1.58268 1.63188 2.22133 2.29196 2.58730 2.64464 3.00885 3.27874 3.33842 3.42249 3.69952 3.84685 3.93408 4.04254 4.15623 4.27278 4.32756 4.34712 4.40081 4.46435 4.50715 4.56983 4.59739 4.73524 4.87854 4.92002 4.94868 5.08307 5.13201 5.26950 5.34525 5.43058 5.45713 5.47325 5.92446 6.08914 6.21180 6.52181 7.07891 7.26058 8.75997 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.003227 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.252096 B = 8674.734873 C = 9237.304666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.376 6.376 3 C 0.139 3.861 4 H 0.095 0.905 5 C -0.156 4.156 6 C -0.075 4.075 7 C -0.131 4.131 8 C -0.091 4.091 9 C -0.165 4.165 10 C 0.078 3.922 11 F -0.149 7.149 12 C 0.154 3.846 13 H 0.072 0.928 14 C -0.154 4.154 15 N -0.700 5.700 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.127 4.127 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.257 1.257 28 H 0.044 0.956 29 H 0.105 0.895 30 H 0.052 0.948 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.414 0.586 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.294 1.004 5.147 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.080 3.920 4 H 0.113 0.887 5 C -0.157 4.157 6 C -0.093 4.093 7 C -0.149 4.149 8 C -0.109 4.109 9 C -0.183 4.183 10 C 0.059 3.941 11 F -0.128 7.128 12 C 0.049 3.951 13 H 0.090 0.910 14 C -0.212 4.212 15 N -0.354 5.354 16 C 0.321 3.679 17 O -0.444 6.444 18 C -0.278 4.278 19 S 0.078 5.922 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -26.292 2.422 3.939 26.695 hybrid contribution 0.028 -1.111 1.060 1.535 sum -26.264 1.311 4.999 26.767 Atomic orbital electron populations 1.23028 0.79087 1.04267 1.00765 1.87875 1.21604 1.25286 1.94717 1.20977 0.93773 0.86493 0.90786 0.88700 1.20445 1.05471 0.91809 0.97964 1.21100 0.96273 1.00295 0.91671 1.21619 0.99434 0.96551 0.97262 1.21420 0.96644 0.92826 0.99981 1.21413 1.03627 1.02324 0.90971 1.17854 1.04299 0.86294 0.85637 1.91459 1.93650 1.67273 1.60409 1.21028 0.87728 0.94022 0.92322 0.90993 1.22055 1.01822 1.03101 0.94192 1.45681 1.04007 1.34424 1.51248 1.20069 0.83215 0.84184 0.80411 1.90683 1.76235 1.35078 1.42385 1.23342 0.98235 1.02345 1.03898 1.85584 0.95940 1.44469 1.66244 1.23207 0.94650 1.17159 1.34363 0.89908 1.26128 0.97206 0.98839 0.96906 1.70192 1.07206 1.35909 1.41548 0.84954 0.77369 0.77367 0.78295 1.19313 1.20324 1.18075 0.93708 0.87653 0.92916 0.83333 0.82836 0.82534 0.83640 0.90532 0.89813 0.94162 0.74856 0.87467 0.87339 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.85 113.37 1.23 1.49 16 2 O -0.38 -6.03 8.13 -148.98 -1.21 -7.24 16 3 C 0.14 2.66 1.85 29.85 0.06 2.72 16 4 H 0.10 1.64 7.40 -2.39 -0.02 1.62 16 5 C -0.16 -3.19 4.66 -19.82 -0.09 -3.29 16 6 C -0.08 -1.32 8.62 22.26 0.19 -1.13 16 7 C -0.13 -2.03 10.04 22.27 0.22 -1.81 16 8 C -0.09 -1.44 10.04 22.26 0.22 -1.22 16 9 C -0.16 -3.19 10.03 22.31 0.22 -2.97 16 10 C 0.08 1.79 7.24 22.38 0.16 1.95 16 11 F -0.15 -3.73 16.57 44.97 0.75 -2.99 16 12 C 0.15 3.92 2.41 44.99 0.11 4.03 16 13 H 0.07 2.26 7.58 -2.39 -0.02 2.25 16 14 C -0.15 -3.57 9.25 71.98 0.67 -2.91 16 15 N -0.70 -19.57 4.50 -442.55 -1.99 -21.57 16 16 C 0.54 20.75 7.81 87.65 0.68 21.43 16 17 O -0.57 -27.20 15.52 -3.03 -0.05 -27.25 16 18 C -0.13 -5.20 6.16 71.23 0.44 -4.76 16 19 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 20 C -0.55 -31.46 9.50 67.96 0.65 -30.81 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 24 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 28 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.48 7.99 -2.39 -0.02 0.46 16 31 H 0.15 2.18 7.13 -2.91 -0.02 2.16 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.08 1.62 7.83 -2.39 -0.02 1.60 16 36 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.41 9.37 7.42 -92.71 -0.69 8.69 16 39 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 40 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -77.59 367.85 4.23 -73.36 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.36 Total: 21.78 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 5.23 Total: -16.01 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.71 Total: -77.80 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.26 Total: -34.50 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.99 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -77.59 4.23 -73.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271824984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.525 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds