Wall clock time and date at job start Tue Mar 31 2020 15:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42897 * 113.99866 * 2 1 4 4 H 1.09003 * 109.47221 * 326.86141 * 3 2 1 5 5 C 1.50696 * 109.46914 * 86.86474 * 3 2 1 6 6 C 1.38217 * 120.01613 * 24.99731 * 5 3 2 7 7 C 1.38220 * 120.02744 * 179.97438 * 6 5 3 8 8 C 1.38269 * 120.05102 * 0.02562 * 7 6 5 9 9 C 1.38174 * 120.02645 * 0.02562 * 8 7 6 10 10 C 1.38443 * 120.01107 * 204.71912 * 5 3 2 11 11 F 1.35097 * 120.02656 * 0.02562 * 10 5 3 12 12 C 1.52999 * 109.46977 * 206.86551 * 3 2 1 13 13 H 1.09003 * 109.47206 * 185.58275 * 12 3 2 14 14 C 1.52999 * 109.47114 * 305.58260 * 12 3 2 15 15 N 1.46496 * 109.47210 * 65.58211 * 12 3 2 16 16 C 1.34778 * 120.00090 * 154.12926 * 15 12 3 17 17 O 1.21284 * 120.00187 * 359.97438 * 16 15 12 18 18 C 1.50693 * 120.00293 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.47416 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00173 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00223 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99661 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47593 * 60.00258 * 24 22 20 26 26 H 1.48505 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47222 * 299.99949 * 24 22 20 28 28 H 1.09000 * 109.47318 * 64.89537 * 1 2 3 29 29 H 1.08998 * 109.46825 * 184.90018 * 1 2 3 30 30 H 1.09007 * 109.46438 * 304.89810 * 1 2 3 31 31 H 1.08007 * 119.98559 * 0.02562 * 6 5 3 32 32 H 1.07999 * 119.97431 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.98218 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.01228 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47071 * 59.99933 * 14 12 3 36 36 H 1.08997 * 109.47331 * 179.97438 * 14 12 3 37 37 H 1.09000 * 109.47295 * 300.00315 * 14 12 3 38 38 H 0.96999 * 120.00306 * 334.12508 * 15 12 3 39 39 H 1.08997 * 109.47301 * 299.99772 * 18 16 15 40 40 H 1.09006 * 109.47419 * 59.99696 * 18 16 15 41 41 H 0.97000 * 119.99585 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3719 1.9874 -0.5618 5 6 2.1436 1.7959 1.4187 6 6 2.2321 0.8893 2.4582 7 6 2.3549 1.3389 3.7595 8 6 2.3888 2.6958 4.0229 9 6 2.2994 3.6041 2.9855 10 6 2.1832 3.1547 1.6807 11 9 2.1020 4.0417 0.6650 12 6 3.3933 1.2480 -0.6519 13 1 3.8774 2.2206 -0.5634 14 6 4.2447 0.1887 0.0510 15 7 3.2516 0.8999 -2.0678 16 6 4.1942 1.2804 -2.9528 17 8 5.1595 1.9113 -2.5771 18 6 4.0483 0.9229 -4.4095 19 16 5.4631 1.5704 -5.3344 20 6 5.0441 1.0245 -6.9564 21 1 4.1343 0.4659 -7.1200 22 6 5.8837 1.3113 -8.0238 23 7 6.9928 1.9916 -7.8243 24 14 5.4398 0.7318 -9.7432 25 1 4.1369 1.3213 -10.1434 26 1 6.4920 1.1637 -10.6981 27 1 5.3375 -0.7496 -9.7553 28 1 -0.3634 0.4360 -0.9306 29 1 -0.3633 -1.0239 0.0878 30 1 -0.3632 0.5880 0.8429 31 1 2.2061 -0.1709 2.2536 32 1 2.4243 0.6298 4.5711 33 1 2.4844 3.0459 5.0402 34 1 2.3255 4.6639 3.1915 35 1 3.7606 -0.7839 -0.0375 36 1 5.2298 0.1474 -0.4137 37 1 4.3501 0.4476 1.1045 38 1 2.4795 0.3956 -2.3685 39 1 4.0100 -0.1612 -4.5155 40 1 3.1289 1.3589 -4.8003 41 1 7.5798 2.1917 -8.5702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271824986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:19 Heat of formation + Delta-G solvation = -104.894258 kcal Electronic energy + Delta-G solvation = -25199.613185 eV Core-core repulsion = 21313.380799 eV Total energy + Delta-G solvation = -3886.232387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.17169 -40.27220 -39.03066 -37.91970 -35.06733 -32.52543 -32.39763 -30.91378 -30.55198 -28.40217 -27.46966 -26.07118 -25.44802 -23.00661 -22.86663 -20.92548 -20.20842 -18.05196 -17.83951 -17.25874 -16.82760 -16.60561 -16.05530 -15.88350 -15.66178 -15.12220 -14.87047 -14.78080 -14.68243 -14.44386 -13.97361 -13.47604 -13.40311 -13.28002 -13.15302 -12.83462 -12.52027 -12.47598 -12.13606 -11.94930 -11.84430 -11.50765 -11.19004 -11.15881 -11.01784 -11.01543 -10.74644 -10.14353 -9.79381 -9.38716 -9.32044 -9.05717 -9.02905 -8.80332 -8.20371 -6.46573 -6.18774 -3.89036 0.74666 0.85582 3.02376 3.12159 3.21155 3.25426 3.29602 3.32798 3.34187 3.72306 3.95437 4.23277 4.28039 4.45131 4.53384 4.65763 4.75363 4.89992 5.03096 5.06015 5.07842 5.16136 5.20951 5.32711 5.38389 5.45291 5.47478 5.65442 5.69324 5.73903 5.80602 5.93443 5.93748 6.02578 6.06842 6.18356 6.32715 6.51379 6.68642 6.76142 7.61987 7.78041 8.37845 8.66723 9.26296 10.88625 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.002489 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.988238 B =11247.045995 C =11645.923212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.369 6.369 3 C 0.125 3.875 4 H 0.080 0.920 5 C -0.145 4.145 6 C -0.065 4.065 7 C -0.135 4.135 8 C -0.089 4.089 9 C -0.156 4.156 10 C 0.109 3.891 11 F -0.134 7.134 12 C 0.157 3.843 13 H 0.098 0.902 14 C -0.159 4.159 15 N -0.731 5.731 16 C 0.533 3.467 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 -2.778 24.581 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.066 3.934 4 H 0.098 0.902 5 C -0.147 4.147 6 C -0.083 4.083 7 C -0.153 4.153 8 C -0.107 4.107 9 C -0.175 4.175 10 C 0.089 3.911 11 F -0.112 7.112 12 C 0.052 3.948 13 H 0.116 0.884 14 C -0.217 4.217 15 N -0.385 5.385 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.303 4.303 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.403 -1.770 25.071 28.484 hybrid contribution -2.036 -0.881 -1.789 2.850 sum -15.439 -2.650 23.283 28.062 Atomic orbital electron populations 1.22865 0.80811 1.02975 1.00374 1.87950 1.19826 1.26208 1.94697 1.21141 0.95629 0.85478 0.91115 0.90212 1.20301 1.05194 0.91842 0.97333 1.20952 0.95950 1.00252 0.91193 1.21253 1.01313 0.95809 0.96899 1.21065 0.97754 0.92943 0.98924 1.21158 1.04032 1.01338 0.90966 1.17584 1.02298 0.86227 0.84964 1.91539 1.93406 1.67649 1.58633 1.20867 0.92508 1.00585 0.80842 0.88374 1.22103 1.00402 0.99226 0.99997 1.45986 1.26378 1.59281 1.06887 1.20317 0.81979 0.78331 0.87418 1.90700 1.30061 1.38466 1.79885 1.23527 1.07393 1.05048 0.94351 1.85393 1.23497 1.72438 1.01958 1.22832 1.10976 1.41504 0.93059 0.90996 1.24992 0.94509 0.94817 0.99291 1.70014 1.11192 1.36846 1.32277 0.86225 0.78210 0.79087 0.81974 1.19964 1.20828 1.19943 0.93637 0.89244 0.93947 0.84186 0.85221 0.85018 0.84583 0.91487 0.91715 0.91990 0.76576 0.89177 0.89279 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.79 101.05 1.09 1.27 16 2 O -0.37 -3.42 8.05 -35.23 -0.28 -3.70 16 3 C 0.13 1.31 1.92 -27.89 -0.05 1.25 16 4 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 5 C -0.14 -1.42 4.32 -104.56 -0.45 -1.87 16 6 C -0.07 -0.53 8.03 -39.60 -0.32 -0.85 16 7 C -0.13 -0.90 10.04 -39.58 -0.40 -1.30 16 8 C -0.09 -0.59 10.04 -39.59 -0.40 -0.99 16 9 C -0.16 -1.30 10.03 -39.51 -0.40 -1.70 16 10 C 0.11 1.13 7.24 -39.42 -0.29 0.85 16 11 F -0.13 -1.65 16.57 2.25 0.04 -1.61 16 12 C 0.16 2.07 2.44 -67.93 -0.17 1.91 16 13 H 0.10 1.52 7.55 -51.93 -0.39 1.13 16 14 C -0.16 -1.98 8.95 37.16 0.33 -1.65 16 15 N -0.73 -10.55 5.05 -53.81 -0.27 -10.82 16 16 C 0.53 10.31 7.82 -10.99 -0.09 10.22 16 17 O -0.52 -12.02 15.51 5.55 0.09 -11.94 16 18 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.44 9.50 30.94 0.29 -15.15 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.27 8.02 -51.93 -0.42 -0.14 16 31 H 0.14 1.05 7.35 -52.48 -0.39 0.66 16 32 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.07 0.78 7.55 -51.93 -0.39 0.39 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.68 6.53 -51.93 -0.34 0.34 16 38 H 0.40 4.77 8.41 -40.82 -0.34 4.43 16 39 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 41 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -34.75 366.57 -7.70 -42.45 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.59 Total: 2.01 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.71 Total: -8.93 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.46 Total: -36.55 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.20 Total: -15.64 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.75 -7.70 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271824986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.444 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds