Wall clock time and date at job start Tue Mar 31 2020 15:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42897 * 113.99866 * 2 1 4 4 H 1.09003 * 109.47221 * 326.86141 * 3 2 1 5 5 C 1.50696 * 109.46914 * 86.86474 * 3 2 1 6 6 C 1.38217 * 120.01613 * 24.99731 * 5 3 2 7 7 C 1.38220 * 120.02744 * 179.97438 * 6 5 3 8 8 C 1.38269 * 120.05102 * 0.02562 * 7 6 5 9 9 C 1.38174 * 120.02645 * 0.02562 * 8 7 6 10 10 C 1.38443 * 120.01107 * 204.71912 * 5 3 2 11 11 F 1.35097 * 120.02656 * 0.02562 * 10 5 3 12 12 C 1.52999 * 109.46977 * 206.86551 * 3 2 1 13 13 H 1.09003 * 109.47206 * 185.58275 * 12 3 2 14 14 C 1.52999 * 109.47114 * 305.58260 * 12 3 2 15 15 N 1.46496 * 109.47210 * 65.58211 * 12 3 2 16 16 C 1.34778 * 120.00090 * 154.12926 * 15 12 3 17 17 O 1.21284 * 120.00187 * 359.97438 * 16 15 12 18 18 C 1.50693 * 120.00293 * 180.02562 * 16 15 12 19 19 S 1.81005 * 109.47416 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00173 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99928 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00223 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99661 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47593 * 60.00258 * 24 22 20 26 26 H 1.48505 * 109.47152 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47222 * 299.99949 * 24 22 20 28 28 H 1.09000 * 109.47318 * 64.89537 * 1 2 3 29 29 H 1.08998 * 109.46825 * 184.90018 * 1 2 3 30 30 H 1.09007 * 109.46438 * 304.89810 * 1 2 3 31 31 H 1.08007 * 119.98559 * 0.02562 * 6 5 3 32 32 H 1.07999 * 119.97431 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.98218 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.01228 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47071 * 59.99933 * 14 12 3 36 36 H 1.08997 * 109.47331 * 179.97438 * 14 12 3 37 37 H 1.09000 * 109.47295 * 300.00315 * 14 12 3 38 38 H 0.96999 * 120.00306 * 334.12508 * 15 12 3 39 39 H 1.08997 * 109.47301 * 299.99772 * 18 16 15 40 40 H 1.09006 * 109.47419 * 59.99696 * 18 16 15 41 41 H 0.97000 * 119.99585 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3719 1.9874 -0.5618 5 6 2.1436 1.7959 1.4187 6 6 2.2321 0.8893 2.4582 7 6 2.3549 1.3389 3.7595 8 6 2.3888 2.6958 4.0229 9 6 2.2994 3.6041 2.9855 10 6 2.1832 3.1547 1.6807 11 9 2.1020 4.0417 0.6650 12 6 3.3933 1.2480 -0.6519 13 1 3.8774 2.2206 -0.5634 14 6 4.2447 0.1887 0.0510 15 7 3.2516 0.8999 -2.0678 16 6 4.1942 1.2804 -2.9528 17 8 5.1595 1.9113 -2.5771 18 6 4.0483 0.9229 -4.4095 19 16 5.4631 1.5704 -5.3344 20 6 5.0441 1.0245 -6.9564 21 1 4.1343 0.4659 -7.1200 22 6 5.8837 1.3113 -8.0238 23 7 6.9928 1.9916 -7.8243 24 14 5.4398 0.7318 -9.7432 25 1 4.1369 1.3213 -10.1434 26 1 6.4920 1.1637 -10.6981 27 1 5.3375 -0.7496 -9.7553 28 1 -0.3634 0.4360 -0.9306 29 1 -0.3633 -1.0239 0.0878 30 1 -0.3632 0.5880 0.8429 31 1 2.2061 -0.1709 2.2536 32 1 2.4243 0.6298 4.5711 33 1 2.4844 3.0459 5.0402 34 1 2.3255 4.6639 3.1915 35 1 3.7606 -0.7839 -0.0375 36 1 5.2298 0.1474 -0.4137 37 1 4.3501 0.4476 1.1045 38 1 2.4795 0.3956 -2.3685 39 1 4.0100 -0.1612 -4.5155 40 1 3.1289 1.3589 -4.8003 41 1 7.5798 2.1917 -8.5702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271824986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:19 Heat of formation + Delta-G solvation = -127.767599 kcal Electronic energy + Delta-G solvation = -25200.605048 eV Core-core repulsion = 21313.380799 eV Total energy + Delta-G solvation = -3887.224249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99519 -41.23918 -40.22367 -38.69094 -36.25534 -34.58660 -33.52934 -31.76548 -31.45407 -29.83105 -28.18873 -27.66380 -26.76546 -23.79977 -23.62998 -21.86855 -21.58908 -19.87890 -18.72168 -18.09735 -17.97828 -17.73128 -17.07215 -16.88087 -16.66124 -16.58204 -16.36556 -15.95248 -15.77279 -15.47186 -15.08556 -14.71975 -14.58280 -14.35994 -14.19874 -13.99971 -13.75364 -13.45966 -13.17328 -13.08326 -12.88514 -12.85809 -12.68923 -12.59109 -12.25187 -12.15808 -11.92836 -11.74984 -11.13018 -11.02829 -10.78953 -10.28831 -10.27957 -9.90009 -9.66447 -8.67423 -8.34580 -6.13061 0.10600 0.24414 1.25549 1.44017 1.45852 1.55903 1.57752 2.19011 2.27676 2.56449 2.62251 2.99318 3.29073 3.30035 3.51927 3.62846 3.84334 3.88212 3.97155 4.14022 4.23966 4.30801 4.36248 4.39846 4.47176 4.49071 4.54488 4.59884 4.72512 4.87967 4.90012 4.94064 5.09272 5.15488 5.25994 5.36595 5.41314 5.42814 5.47668 5.92654 6.04944 6.19578 6.46354 7.06280 7.20421 8.74524 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.002489 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.988238 B =11247.045995 C =11645.923212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.373 6.373 3 C 0.139 3.861 4 H 0.074 0.926 5 C -0.157 4.157 6 C -0.069 4.069 7 C -0.128 4.128 8 C -0.084 4.084 9 C -0.163 4.163 10 C 0.077 3.923 11 F -0.154 7.154 12 C 0.155 3.845 13 H 0.070 0.930 14 C -0.149 4.149 15 N -0.707 5.707 16 C 0.535 3.465 17 O -0.563 6.563 18 C -0.128 4.128 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.261 1.261 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.416 0.584 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.567 -4.617 25.840 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.292 6.292 3 C 0.080 3.920 4 H 0.092 0.908 5 C -0.159 4.159 6 C -0.087 4.087 7 C -0.146 4.146 8 C -0.101 4.101 9 C -0.182 4.182 10 C 0.058 3.942 11 F -0.133 7.133 12 C 0.050 3.950 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.361 5.361 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.279 4.279 19 S 0.077 5.923 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.186 1.186 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.064 0.936 31 H 0.167 0.833 32 H 0.177 0.823 33 H 0.180 0.820 34 H 0.164 0.836 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.727 -3.636 26.363 30.912 hybrid contribution -1.417 -0.332 -1.983 2.460 sum -17.143 -3.968 24.379 30.066 Atomic orbital electron populations 1.23043 0.79293 1.04338 1.00744 1.87922 1.21351 1.25120 1.94776 1.20797 0.93621 0.86071 0.91551 0.90846 1.20267 1.06487 0.91902 0.97197 1.21125 0.95785 1.00339 0.91448 1.21637 0.99433 0.96445 0.97040 1.21462 0.96087 0.92753 0.99832 1.21420 1.03720 1.02480 0.90533 1.17971 1.04357 0.86449 0.85447 1.91481 1.93840 1.68335 1.59648 1.20932 0.94667 0.99459 0.79914 0.91186 1.22005 0.98668 0.99508 1.00519 1.45742 1.25412 1.57862 1.07043 1.20106 0.82204 0.78105 0.87432 1.90689 1.32199 1.40834 1.80413 1.23361 1.04477 1.05868 0.94226 1.85587 1.28622 1.74016 1.04078 1.23174 1.11486 1.41622 0.93185 0.89875 1.26154 0.94168 0.94635 1.04283 1.70185 1.12563 1.38274 1.33801 0.84987 0.78275 0.79032 0.75590 1.18652 1.20370 1.18581 0.93372 0.87325 0.93561 0.83334 0.82286 0.81992 0.83580 0.90189 0.94515 0.90389 0.74709 0.87112 0.87241 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.79 113.37 1.22 1.47 16 2 O -0.37 -6.20 8.05 -148.98 -1.20 -7.40 16 3 C 0.14 2.81 1.92 29.85 0.06 2.87 16 4 H 0.07 1.56 7.53 -2.39 -0.02 1.54 16 5 C -0.16 -2.95 4.32 -19.82 -0.09 -3.03 16 6 C -0.07 -0.97 8.03 22.26 0.18 -0.79 16 7 C -0.13 -1.30 10.04 22.27 0.22 -1.08 16 8 C -0.08 -0.88 10.04 22.26 0.22 -0.65 16 9 C -0.16 -2.53 10.03 22.31 0.22 -2.30 16 10 C 0.08 1.61 7.24 22.38 0.16 1.77 16 11 F -0.15 -4.00 16.57 44.97 0.75 -3.26 16 12 C 0.16 4.11 2.44 44.99 0.11 4.22 16 13 H 0.07 2.30 7.55 -2.39 -0.02 2.28 16 14 C -0.15 -3.66 8.95 71.98 0.64 -3.01 16 15 N -0.71 -20.14 5.05 -442.54 -2.24 -22.37 16 16 C 0.54 20.99 7.82 87.65 0.69 21.68 16 17 O -0.56 -27.38 15.51 -3.04 -0.05 -27.43 16 18 C -0.13 -5.28 6.16 71.23 0.44 -4.84 16 19 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 20 C -0.55 -31.73 9.50 67.95 0.65 -31.09 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 24 Si 1.00 44.10 29.55 68.60 2.03 46.12 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.51 8.02 -2.38 -0.02 0.49 16 31 H 0.15 1.80 7.35 -2.91 -0.02 1.78 16 32 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.08 1.74 7.55 -2.39 -0.02 1.73 16 36 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.65 6.53 -2.39 -0.02 1.63 16 38 H 0.42 9.26 8.41 -92.71 -0.78 8.48 16 39 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 40 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 41 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -78.77 366.57 3.88 -74.89 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.27 Total: 19.33 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.20 Total: -13.61 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.95 Total: -78.93 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.25 Total: -34.83 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.75 Total: -3.26 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -78.77 3.88 -74.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271824986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.882 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds