Wall clock time and date at job start Tue Mar 31 2020 15:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 113.99958 * 2 1 4 4 H 1.08997 * 109.47325 * 29.99972 * 3 2 1 5 5 C 1.50698 * 109.46968 * 269.99768 * 3 2 1 6 6 C 1.38219 * 120.01308 * 334.72587 * 5 3 2 7 7 C 1.38230 * 120.02077 * 179.71862 * 6 5 3 8 8 C 1.38261 * 120.05266 * 0.55684 * 7 6 5 9 9 C 1.38176 * 120.02842 * 359.72013 * 8 7 6 10 10 C 1.38442 * 120.01196 * 155.00278 * 5 3 2 11 11 F 1.35099 * 120.02355 * 0.02562 * 10 5 3 12 12 C 1.53007 * 109.47193 * 149.99819 * 3 2 1 13 13 H 1.09000 * 109.46831 * 184.99660 * 12 3 2 14 14 C 1.52998 * 109.47211 * 305.00018 * 12 3 2 15 15 N 1.46506 * 109.46782 * 65.00036 * 12 3 2 16 16 C 1.34777 * 119.99873 * 155.00310 * 15 12 3 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 12 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 12 19 19 S 1.80994 * 109.47338 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00333 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00282 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99955 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99902 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47232 * 90.00152 * 24 22 20 26 26 H 1.48500 * 109.47178 * 210.00187 * 24 22 20 27 27 H 1.48500 * 109.47167 * 330.00076 * 24 22 20 28 28 H 1.09000 * 109.47442 * 300.00063 * 1 2 3 29 29 H 1.09002 * 109.47441 * 60.00045 * 1 2 3 30 30 H 1.09006 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.98912 * 359.97438 * 6 5 3 32 32 H 1.08000 * 119.96839 * 180.27532 * 7 6 5 33 33 H 1.07997 * 119.98944 * 179.74261 * 8 7 6 34 34 H 1.07993 * 120.01475 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46901 * 59.99641 * 14 12 3 36 36 H 1.09001 * 109.47093 * 179.97438 * 14 12 3 37 37 H 1.09002 * 109.47121 * 299.99744 * 14 12 3 38 38 H 0.96995 * 120.00050 * 334.72425 * 15 12 3 39 39 H 1.09004 * 109.47043 * 299.99732 * 18 16 15 40 40 H 1.09000 * 109.46978 * 59.99653 * 18 16 15 41 41 H 0.97003 * 119.99413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2145 1.7643 -1.4208 6 6 2.3600 0.8347 -2.4334 7 6 2.5417 1.2554 -3.7375 8 6 2.5895 2.6061 -4.0290 9 6 2.4499 3.5372 -3.0177 10 6 2.2622 3.1170 -1.7115 11 9 2.1262 4.0263 -0.7217 12 6 3.3589 1.2633 0.7213 13 1 3.7608 2.2734 0.7994 14 6 3.1696 0.6798 2.1229 15 7 4.2912 0.4239 -0.0353 16 6 5.6199 0.6162 0.0837 17 8 6.0436 1.4845 0.8169 18 6 6.5790 -0.2475 -0.6941 19 16 8.2784 0.2531 -0.3236 20 6 9.1610 -0.8874 -1.3360 21 1 8.6224 -1.6066 -1.9351 22 6 10.5485 -0.8622 -1.3626 23 7 11.2078 -1.7139 -2.1193 24 14 11.4801 0.3804 -0.3246 25 1 11.7640 -0.2037 1.0107 26 1 12.7590 0.7263 -0.9956 27 1 10.6581 1.6066 -0.1639 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.3277 -0.2205 -2.2061 32 1 2.6509 0.5284 -4.5286 33 1 2.7356 2.9336 -5.0477 34 1 2.4869 4.5921 -3.2457 35 1 2.7676 -0.3304 2.0447 36 1 4.1305 0.6493 2.6366 37 1 2.4759 1.3043 2.6859 38 1 3.9524 -0.2729 -0.6189 39 1 6.4378 -1.2912 -0.4131 40 1 6.3904 -0.1298 -1.7612 41 1 12.1775 -1.6959 -2.1382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271824988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:22 Heat of formation + Delta-G solvation = -105.305205 kcal Electronic energy + Delta-G solvation = -25752.489269 eV Core-core repulsion = 21866.239062 eV Total energy + Delta-G solvation = -3886.250207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.13884 -40.29521 -38.95244 -37.95810 -35.13015 -32.41432 -32.12748 -31.20074 -30.64561 -28.60480 -27.47268 -25.93464 -25.58095 -22.99771 -22.56626 -21.24781 -20.22834 -17.99113 -17.91109 -17.33929 -16.73468 -16.52160 -16.18119 -15.84328 -15.56633 -15.13620 -15.01258 -14.90073 -14.76135 -14.29061 -13.88261 -13.55601 -13.42112 -13.27976 -13.01536 -12.77170 -12.75538 -12.53217 -12.15142 -11.98282 -11.79649 -11.70982 -11.25612 -11.22973 -11.21109 -10.98467 -10.56209 -10.12149 -9.83026 -9.44828 -9.22087 -8.99443 -8.95578 -8.84850 -8.45958 -6.87872 -6.26450 -3.97442 0.86820 0.96601 2.80245 3.03992 3.22228 3.31566 3.34967 3.41603 3.53078 3.72308 4.02606 4.18601 4.35795 4.52169 4.58599 4.65952 4.79631 4.84766 5.00778 5.03589 5.06159 5.12586 5.12976 5.26554 5.26981 5.35389 5.41800 5.57311 5.68510 5.78933 5.82378 5.82911 5.93695 6.03345 6.06892 6.16709 6.23891 6.57551 6.62502 6.78256 7.72177 7.96830 8.44378 8.57704 9.20070 10.82855 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003386 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.089188 B = 8266.614687 C = 8821.182507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.126 3.874 4 H 0.086 0.914 5 C -0.144 4.144 6 C -0.070 4.070 7 C -0.128 4.128 8 C -0.088 4.088 9 C -0.154 4.154 10 C 0.105 3.895 11 F -0.138 7.138 12 C 0.156 3.844 13 H 0.099 0.901 14 C -0.160 4.160 15 N -0.724 5.724 16 C 0.532 3.468 17 O -0.521 6.521 18 C -0.123 4.123 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.401 0.599 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.013 6.011 -0.415 26.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.067 3.933 4 H 0.104 0.896 5 C -0.146 4.146 6 C -0.088 4.088 7 C -0.147 4.147 8 C -0.106 4.106 9 C -0.172 4.172 10 C 0.086 3.914 11 F -0.117 7.117 12 C 0.051 3.949 13 H 0.117 0.883 14 C -0.218 4.218 15 N -0.378 5.378 16 C 0.318 3.682 17 O -0.396 6.396 18 C -0.273 4.273 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.156 0.844 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.236 0.764 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.029 7.263 0.786 26.074 hybrid contribution -0.253 -0.566 -0.770 0.989 sum -25.283 6.698 0.015 26.155 Atomic orbital electron populations 1.22842 0.80678 1.03019 1.00178 1.87908 1.19976 1.26239 1.94685 1.21209 0.95342 0.85718 0.91052 0.89649 1.20309 1.04960 0.91875 0.97418 1.20892 0.96448 0.99864 0.91575 1.21274 1.00463 0.96067 0.96855 1.21070 0.97584 0.92826 0.99156 1.21136 1.03638 1.01253 0.91217 1.17508 1.02710 0.85743 0.85437 1.91495 1.93188 1.66306 1.60682 1.20964 0.86200 0.96739 0.91024 0.88349 1.22109 1.02666 1.01819 0.95253 1.45918 1.05397 1.38181 1.48328 1.20261 0.82196 0.83965 0.81773 1.90690 1.77350 1.33254 1.38314 1.23262 0.99066 1.02178 1.02812 1.84775 0.95380 1.49295 1.62080 1.22328 0.94270 1.20090 1.30098 0.89417 1.24702 0.96574 0.95322 0.94663 1.69944 1.08243 1.35538 1.38087 0.86741 0.80646 0.83607 0.80908 1.19213 1.19981 1.15921 0.93793 0.93947 0.89251 0.84425 0.85078 0.84963 0.84701 0.91387 0.91428 0.92143 0.76392 0.88552 0.88619 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.28 16 2 O -0.37 -3.28 8.05 -35.23 -0.28 -3.56 16 3 C 0.13 1.23 1.90 -27.88 -0.05 1.18 16 4 H 0.09 0.76 7.44 -51.93 -0.39 0.38 16 5 C -0.14 -1.51 4.60 -104.55 -0.48 -1.99 16 6 C -0.07 -0.66 8.40 -39.59 -0.33 -0.99 16 7 C -0.13 -1.13 10.04 -39.58 -0.40 -1.52 16 8 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 9 C -0.15 -1.51 10.03 -39.51 -0.40 -1.91 16 10 C 0.11 1.18 7.24 -39.42 -0.29 0.90 16 11 F -0.14 -1.65 16.57 2.25 0.04 -1.61 16 12 C 0.16 1.92 2.47 -67.92 -0.17 1.76 16 13 H 0.10 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.16 -1.83 9.29 37.16 0.35 -1.48 16 15 N -0.72 -9.96 4.45 -53.80 -0.24 -10.19 16 16 C 0.53 9.77 7.81 -10.99 -0.09 9.68 16 17 O -0.52 -11.46 15.52 5.55 0.09 -11.38 16 18 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 23 N -0.88 -26.77 13.97 55.49 0.78 -26.00 16 24 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 25 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 28 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.14 1.15 7.08 -52.49 -0.37 0.78 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.40 4.73 7.25 -40.82 -0.30 4.43 16 39 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 40 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 41 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -34.28 364.48 -7.21 -41.49 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -5.64 Total: 2.68 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.72 Total: -8.58 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.54 Total: -36.19 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.20 Total: -14.94 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.28 -7.21 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271824988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.815 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds