Wall clock time and date at job start Tue Mar 31 2020 15:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 113.99958 * 2 1 4 4 H 1.08997 * 109.47325 * 29.99972 * 3 2 1 5 5 C 1.50698 * 109.46968 * 269.99768 * 3 2 1 6 6 C 1.38219 * 120.01308 * 334.72587 * 5 3 2 7 7 C 1.38230 * 120.02077 * 179.71862 * 6 5 3 8 8 C 1.38261 * 120.05266 * 0.55684 * 7 6 5 9 9 C 1.38176 * 120.02842 * 359.72013 * 8 7 6 10 10 C 1.38442 * 120.01196 * 155.00278 * 5 3 2 11 11 F 1.35099 * 120.02355 * 0.02562 * 10 5 3 12 12 C 1.53007 * 109.47193 * 149.99819 * 3 2 1 13 13 H 1.09000 * 109.46831 * 184.99660 * 12 3 2 14 14 C 1.52998 * 109.47211 * 305.00018 * 12 3 2 15 15 N 1.46506 * 109.46782 * 65.00036 * 12 3 2 16 16 C 1.34777 * 119.99873 * 155.00310 * 15 12 3 17 17 O 1.21284 * 119.99754 * 359.97438 * 16 15 12 18 18 C 1.50696 * 120.00137 * 179.97438 * 16 15 12 19 19 S 1.80994 * 109.47338 * 179.97438 * 18 16 15 20 20 C 1.76204 * 100.00333 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99652 * 359.97438 * 20 19 18 22 22 C 1.38795 * 120.00282 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99955 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99902 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47232 * 90.00152 * 24 22 20 26 26 H 1.48500 * 109.47178 * 210.00187 * 24 22 20 27 27 H 1.48500 * 109.47167 * 330.00076 * 24 22 20 28 28 H 1.09000 * 109.47442 * 300.00063 * 1 2 3 29 29 H 1.09002 * 109.47441 * 60.00045 * 1 2 3 30 30 H 1.09006 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.98912 * 359.97438 * 6 5 3 32 32 H 1.08000 * 119.96839 * 180.27532 * 7 6 5 33 33 H 1.07997 * 119.98944 * 179.74261 * 8 7 6 34 34 H 1.07993 * 120.01475 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46901 * 59.99641 * 14 12 3 36 36 H 1.09001 * 109.47093 * 179.97438 * 14 12 3 37 37 H 1.09002 * 109.47121 * 299.99744 * 14 12 3 38 38 H 0.96995 * 120.00050 * 334.72425 * 15 12 3 39 39 H 1.09004 * 109.47043 * 299.99732 * 18 16 15 40 40 H 1.09000 * 109.46978 * 59.99653 * 18 16 15 41 41 H 0.97003 * 119.99413 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2145 1.7643 -1.4208 6 6 2.3600 0.8347 -2.4334 7 6 2.5417 1.2554 -3.7375 8 6 2.5895 2.6061 -4.0290 9 6 2.4499 3.5372 -3.0177 10 6 2.2622 3.1170 -1.7115 11 9 2.1262 4.0263 -0.7217 12 6 3.3589 1.2633 0.7213 13 1 3.7608 2.2734 0.7994 14 6 3.1696 0.6798 2.1229 15 7 4.2912 0.4239 -0.0353 16 6 5.6199 0.6162 0.0837 17 8 6.0436 1.4845 0.8169 18 6 6.5790 -0.2475 -0.6941 19 16 8.2784 0.2531 -0.3236 20 6 9.1610 -0.8874 -1.3360 21 1 8.6224 -1.6066 -1.9351 22 6 10.5485 -0.8622 -1.3626 23 7 11.2078 -1.7139 -2.1193 24 14 11.4801 0.3804 -0.3246 25 1 11.7640 -0.2037 1.0107 26 1 12.7590 0.7263 -0.9956 27 1 10.6581 1.6066 -0.1639 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 2.3277 -0.2205 -2.2061 32 1 2.6509 0.5284 -4.5286 33 1 2.7356 2.9336 -5.0477 34 1 2.4869 4.5921 -3.2457 35 1 2.7676 -0.3304 2.0447 36 1 4.1305 0.6493 2.6366 37 1 2.4759 1.3043 2.6859 38 1 3.9524 -0.2729 -0.6189 39 1 6.4378 -1.2912 -0.4131 40 1 6.3904 -0.1298 -1.7612 41 1 12.1775 -1.6959 -2.1382 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271824988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:22 Heat of formation + Delta-G solvation = -127.166420 kcal Electronic energy + Delta-G solvation = -25753.437242 eV Core-core repulsion = 21866.239062 eV Total energy + Delta-G solvation = -3887.198180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.98088 -41.27757 -40.10493 -38.71355 -36.24075 -34.66564 -33.15798 -32.16900 -31.42874 -30.02835 -28.11116 -27.84136 -26.61425 -23.77853 -23.46426 -22.22041 -21.46613 -19.92318 -18.75103 -18.24010 -18.00235 -17.40435 -17.23409 -17.08054 -16.67690 -16.42724 -16.40941 -15.87630 -15.70104 -15.55846 -15.11025 -14.90715 -14.63632 -14.45062 -14.15258 -14.00891 -13.61204 -13.43927 -13.34108 -13.25499 -13.01971 -12.93351 -12.64420 -12.56415 -12.35820 -12.13137 -11.93884 -11.85942 -11.16631 -10.98910 -10.78117 -10.52902 -10.17345 -9.94904 -9.65553 -8.98890 -8.51006 -6.21487 0.12959 0.24103 0.98681 1.31411 1.46914 1.55501 1.57429 2.18660 2.25936 2.58366 2.61279 2.74395 2.87377 3.27794 3.41841 3.68371 3.83781 3.87524 4.00679 4.15448 4.21780 4.31212 4.33335 4.39554 4.45440 4.46598 4.57410 4.59349 4.73508 4.87764 4.91965 4.95414 5.08270 5.13018 5.28357 5.34261 5.43581 5.47337 5.71637 5.92189 6.08669 6.12183 6.46715 6.94446 7.19503 8.61463 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.015180 B = 0.003386 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.089188 B = 8266.614687 C = 8821.182507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.376 6.376 3 C 0.137 3.863 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.076 4.076 7 C -0.131 4.131 8 C -0.091 4.091 9 C -0.164 4.164 10 C 0.080 3.920 11 F -0.149 7.149 12 C 0.154 3.846 13 H 0.076 0.924 14 C -0.153 4.153 15 N -0.700 5.700 16 C 0.537 3.463 17 O -0.562 6.562 18 C -0.109 4.109 19 S -0.174 6.174 20 C -0.528 4.528 21 H 0.063 0.937 22 C 0.048 3.952 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.258 1.258 27 H -0.238 1.238 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.414 0.586 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.652 5.996 -0.626 28.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.078 3.922 4 H 0.113 0.887 5 C -0.155 4.155 6 C -0.094 4.094 7 C -0.149 4.149 8 C -0.109 4.109 9 C -0.183 4.183 10 C 0.060 3.940 11 F -0.128 7.128 12 C 0.049 3.951 13 H 0.094 0.906 14 C -0.211 4.211 15 N -0.354 5.354 16 C 0.322 3.678 17 O -0.440 6.440 18 C -0.260 4.260 19 S 0.052 5.948 20 C -0.676 4.676 21 H 0.081 0.919 22 C -0.158 4.158 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.162 1.162 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.251 0.749 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.718 7.224 0.557 27.683 hybrid contribution 0.065 -0.621 -0.779 0.999 sum -26.653 6.603 -0.223 27.460 Atomic orbital electron populations 1.23022 0.79137 1.04245 1.00754 1.87885 1.21558 1.25337 1.94703 1.20968 0.93961 0.86555 0.90680 0.88677 1.20414 1.05412 0.91789 0.97904 1.21099 0.96332 1.00244 0.91747 1.21614 0.99405 0.96625 0.97208 1.21411 0.96665 0.92763 1.00034 1.21403 1.03497 1.02291 0.91072 1.17828 1.04159 0.86110 0.85860 1.91461 1.93448 1.66693 1.61159 1.21061 0.86957 0.95224 0.91872 0.90612 1.22044 1.01853 1.02795 0.94455 1.45707 1.03967 1.38003 1.47703 1.19952 0.83365 0.83233 0.81223 1.90682 1.78223 1.34964 1.40162 1.23242 0.95418 1.03274 1.04089 1.84714 0.99596 1.48839 1.61607 1.22459 0.94825 1.20175 1.30109 0.91900 1.25521 0.97495 0.97004 0.95735 1.70016 1.08961 1.37055 1.39431 0.85896 0.79820 0.81238 0.79604 1.18694 1.18264 1.16219 0.92882 0.93747 0.87710 0.83335 0.82966 0.82638 0.83663 0.90435 0.93985 0.89957 0.74898 0.86947 0.87083 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.81 113.37 1.23 1.47 16 2 O -0.38 -5.74 8.05 -148.98 -1.20 -6.94 16 3 C 0.14 2.48 1.90 29.85 0.06 2.53 16 4 H 0.10 1.54 7.44 -2.39 -0.02 1.52 16 5 C -0.15 -3.00 4.60 -19.82 -0.09 -3.09 16 6 C -0.08 -1.28 8.40 22.26 0.19 -1.09 16 7 C -0.13 -1.98 10.04 22.27 0.22 -1.75 16 8 C -0.09 -1.40 10.04 22.26 0.22 -1.18 16 9 C -0.16 -3.05 10.03 22.31 0.22 -2.83 16 10 C 0.08 1.73 7.24 22.38 0.16 1.89 16 11 F -0.15 -3.55 16.57 44.97 0.75 -2.81 16 12 C 0.15 3.63 2.47 44.99 0.11 3.74 16 13 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 14 C -0.15 -3.30 9.29 71.98 0.67 -2.63 16 15 N -0.70 -18.32 4.45 -442.52 -1.97 -20.28 16 16 C 0.54 19.29 7.81 87.66 0.68 19.98 16 17 O -0.56 -24.77 15.52 -3.04 -0.05 -24.82 16 18 C -0.11 -4.24 6.16 71.23 0.44 -3.81 16 19 S -0.17 -8.94 18.55 -56.49 -1.05 -9.99 16 20 C -0.53 -30.97 10.04 67.95 0.68 -30.29 16 21 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 22 C 0.05 2.83 5.50 84.86 0.47 3.29 16 23 N -0.92 -55.98 13.97 21.65 0.30 -55.68 16 24 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 25 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 27 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 28 H 0.05 0.45 8.08 -2.39 -0.02 0.43 16 29 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.15 2.09 7.08 -2.91 -0.02 2.07 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.08 1.52 7.56 -2.39 -0.02 1.50 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 8.85 7.25 -92.71 -0.67 8.18 16 39 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 40 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 41 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -74.28 364.48 4.29 -69.99 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.34 Total: 16.98 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 5.26 Total: -13.76 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.67 Total: -75.96 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.25 Total: -31.76 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.75 Total: -2.81 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Total: -74.28 4.29 -69.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271824988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.173 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds