Wall clock time and date at job start Tue Mar 31 2020 15:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 S 1.80997 * 109.47641 * 179.97438 * 7 6 5 9 9 C 1.76204 * 100.00365 * 180.02562 * 8 7 6 10 10 H 1.07992 * 119.99729 * 0.02562 * 9 8 7 11 11 C 1.38797 * 119.99828 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00295 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99600 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47203 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46810 * 120.00932 * 13 11 9 16 16 H 1.48498 * 109.47092 * 240.00212 * 13 11 9 17 17 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 18 18 C 1.38227 * 120.00582 * 79.72444 * 17 2 1 19 19 C 1.38229 * 120.00255 * 179.74804 * 18 17 2 20 20 C 1.38232 * 119.99886 * 0.54725 * 19 18 17 21 21 S 1.76201 * 120.00109 * 179.72615 * 20 19 18 22 22 C 1.81400 * 103.00084 * 269.97873 * 21 20 19 23 23 O 1.42102 * 103.00147 * 156.12786 * 21 20 19 24 24 C 1.38234 * 119.99896 * 359.70650 * 20 19 18 25 25 C 1.38229 * 120.00220 * 0.02562 * 24 20 19 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 28 28 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 29 29 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 33 33 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 36 36 H 0.96999 * 119.99948 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.99741 * 359.97438 * 18 17 2 38 38 H 1.07997 * 120.00212 * 180.27429 * 19 18 17 39 39 H 1.08997 * 109.47051 * 60.00091 * 22 21 20 40 40 H 1.09003 * 109.47351 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47019 * 299.99731 * 22 21 20 42 42 H 1.08003 * 119.99951 * 179.97438 * 24 20 19 43 43 H 1.07997 * 120.00269 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 2.6610 0.4203 -4.7694 8 16 3.2694 -0.4731 -6.2212 9 6 3.2447 0.8253 -7.4121 10 1 2.9160 1.8136 -7.1267 11 6 3.6488 0.5781 -8.7168 12 7 4.0500 -0.6264 -9.0645 13 14 3.6220 1.9544 -9.9794 14 1 3.1332 3.2027 -9.3407 15 1 4.9942 2.1716 -10.5040 16 1 2.7178 1.5831 -11.0973 17 6 2.0323 -0.7106 1.2304 18 6 2.0614 -2.0920 1.2673 19 6 2.5271 -2.7437 2.3939 20 6 2.9531 -2.0140 3.4879 21 16 3.5399 -2.8447 4.9267 22 6 2.0346 -3.0609 5.9156 23 8 4.3738 -1.8712 5.5402 24 6 2.9191 -0.6325 3.4530 25 6 2.4586 0.0192 2.3243 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 1.6653 0.8133 -4.9751 35 1 3.3369 1.2443 -4.5408 36 1 4.3327 -0.7991 -9.9762 37 1 1.7237 -2.6623 0.4145 38 1 2.5540 -3.8230 2.4211 39 1 1.3132 -3.6545 5.3541 40 1 2.2811 -3.5736 6.8454 41 1 1.6049 -2.0849 6.1414 42 1 3.2515 -0.0624 4.3079 43 1 2.4316 1.0985 2.2971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271854250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:03 Heat of formation + Delta-G solvation = -29.822850 kcal Electronic energy + Delta-G solvation = -21699.317179 eV Core-core repulsion = 18382.553309 eV Total energy + Delta-G solvation = -3316.763870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89568 -37.10173 -36.10041 -33.88715 -32.43063 -31.35503 -30.81492 -29.36866 -29.02904 -25.81197 -25.10048 -23.60535 -22.97191 -21.10178 -20.61402 -18.50726 -17.47131 -17.12528 -16.31055 -16.08243 -15.36620 -15.18800 -14.82155 -14.77421 -14.65848 -14.20237 -14.07984 -14.03766 -13.72415 -13.50826 -13.11299 -12.95779 -12.80177 -12.52022 -12.30532 -12.24014 -11.99224 -11.66710 -11.37700 -11.31828 -11.20411 -11.07777 -10.79262 -10.62619 -10.55271 -10.41873 -9.56306 -9.36750 -9.26662 -9.06718 -8.75908 -8.56864 -8.29829 -6.52548 -6.23040 -3.93064 0.52116 1.06595 1.49133 2.29279 3.20675 3.21625 3.26824 3.29789 3.53031 3.56142 4.02347 4.22621 4.34347 4.51690 4.68078 4.73012 4.81563 4.99967 5.05732 5.10475 5.13017 5.24603 5.26796 5.37888 5.45480 5.49022 5.51313 5.56275 5.63779 5.72642 5.73120 5.87359 5.93837 5.95159 6.01077 6.11283 6.21927 6.33045 6.58619 6.60436 6.72436 6.95732 7.26659 7.60792 8.36809 9.23455 10.85200 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030809 B = 0.001685 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.600911 B =16614.442201 C =16928.513906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.117 3.883 3 H 0.053 0.947 4 N -0.681 5.681 5 C 0.063 3.937 6 C -0.094 4.094 7 C -0.113 4.113 8 S -0.132 6.132 9 C -0.516 4.516 10 H 0.072 0.928 11 C 0.070 3.930 12 N -0.869 5.869 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.050 4.050 18 C -0.117 4.117 19 C -0.045 4.045 20 C -0.465 4.465 21 S 1.332 4.668 22 C -0.498 4.498 23 O -0.859 6.859 24 C -0.054 4.054 25 C -0.130 4.130 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.344 0.656 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.267 0.733 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 -7.119 28.555 29.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.008 3.992 3 H 0.070 0.930 4 N -0.313 5.313 5 C -0.068 4.068 6 C -0.133 4.133 7 C -0.262 4.262 8 S 0.096 5.904 9 C -0.664 4.664 10 H 0.091 0.909 11 C -0.138 4.138 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.205 1.205 17 C -0.051 4.051 18 C -0.136 4.136 19 C -0.064 4.064 20 C -0.561 4.561 21 S 1.529 4.471 22 C -0.655 4.655 23 O -0.855 6.855 24 C -0.073 4.073 25 C -0.150 4.150 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.162 0.838 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.056 -8.818 28.348 30.116 hybrid contribution -0.710 4.840 -0.141 4.893 sum -5.766 -3.979 28.208 29.065 Atomic orbital electron populations 1.21778 0.93224 1.02805 1.01463 1.20532 0.96393 0.95380 0.86911 0.92957 1.60635 1.33655 1.33402 1.03637 1.22096 1.00801 0.93655 0.90212 1.21232 1.01644 0.98354 0.92098 1.23221 1.02823 1.01169 0.98980 1.84624 1.85350 1.18813 1.01599 1.22738 1.50867 0.96759 0.96076 0.90945 1.25017 0.94634 0.96423 0.97749 1.70033 1.41425 1.20019 1.19029 0.86115 0.77938 0.81069 0.80413 1.19646 1.20576 1.20545 1.20222 0.95486 0.94428 0.94918 1.21260 0.99650 0.93953 0.98771 1.20888 0.94169 0.99735 0.91634 1.27609 1.12824 1.01761 1.13952 1.69495 0.83098 1.09856 0.84657 1.27770 1.18502 1.07204 1.12016 1.93109 1.55135 1.62510 1.74750 1.21038 0.94560 0.93747 0.97991 1.21141 1.00338 0.99999 0.93514 0.91601 0.92757 0.91954 0.83781 0.90936 0.95313 0.91808 0.90655 0.92123 0.92389 0.92361 0.84166 0.84467 0.87018 0.87682 0.90101 0.85769 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.39 37.16 0.35 -0.89 16 2 C 0.12 1.15 2.82 -68.86 -0.19 0.96 16 3 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 4 N -0.68 -7.50 5.70 -107.95 -0.62 -8.12 16 5 C 0.06 0.81 5.48 -3.83 -0.02 0.79 16 6 C -0.09 -1.50 5.48 -26.74 -0.15 -1.65 16 7 C -0.11 -2.26 5.67 37.15 0.21 -2.05 16 8 S -0.13 -3.46 21.44 -107.50 -2.30 -5.76 16 9 C -0.52 -14.87 9.50 30.94 0.29 -14.58 16 10 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 11 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 12 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 13 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.05 -0.47 4.71 -104.63 -0.49 -0.96 16 18 C -0.12 -0.97 9.01 -39.59 -0.36 -1.32 16 19 C -0.05 -0.29 9.75 -39.59 -0.39 -0.68 16 20 C -0.46 -3.67 5.61 -39.59 -0.22 -3.90 16 21 S 1.33 7.47 14.19 -107.50 -1.53 5.95 16 22 C -0.50 -2.27 10.70 101.05 1.08 -1.19 16 23 O -0.86 -10.72 16.90 -35.23 -0.60 -11.31 16 24 C -0.05 -0.55 9.44 -39.59 -0.37 -0.92 16 25 C -0.13 -1.27 9.67 -39.58 -0.38 -1.66 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 7.45 -51.92 -0.39 0.21 16 29 H 0.34 3.67 8.00 -39.29 -0.31 3.36 16 30 H 0.07 0.93 7.44 -51.93 -0.39 0.55 16 31 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 35 H 0.06 1.16 8.14 -51.91 -0.42 0.74 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 1.09 7.73 -52.48 -0.41 0.68 16 38 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 39 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.37 8.14 -51.92 -0.42 -0.06 16 41 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 42 H 0.12 1.36 7.46 -52.48 -0.39 0.96 16 43 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -36.96 384.32 -11.17 -48.13 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.89 Total: 0.18 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: -0.74 Total: -26.14 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.12 Total: -33.40 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.60 Total: -11.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -3.83 Total: 0.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.96 -11.17 -48.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271854250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.304 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds