Wall clock time and date at job start Tue Mar 31 2020 15:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 S 1.80997 * 109.47641 * 179.97438 * 7 6 5 9 9 C 1.76204 * 100.00365 * 180.02562 * 8 7 6 10 10 H 1.07992 * 119.99729 * 0.02562 * 9 8 7 11 11 C 1.38797 * 119.99828 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00295 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99600 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47203 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46810 * 120.00932 * 13 11 9 16 16 H 1.48498 * 109.47092 * 240.00212 * 13 11 9 17 17 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 18 18 C 1.38227 * 120.00582 * 79.72444 * 17 2 1 19 19 C 1.38229 * 120.00255 * 179.74804 * 18 17 2 20 20 C 1.38232 * 119.99886 * 0.54725 * 19 18 17 21 21 S 1.76201 * 120.00109 * 179.72615 * 20 19 18 22 22 C 1.81400 * 103.00084 * 269.97873 * 21 20 19 23 23 O 1.42102 * 103.00147 * 156.12786 * 21 20 19 24 24 C 1.38234 * 119.99896 * 359.70650 * 20 19 18 25 25 C 1.38229 * 120.00220 * 0.02562 * 24 20 19 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 28 28 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 29 29 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 33 33 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 36 36 H 0.96999 * 119.99948 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.99741 * 359.97438 * 18 17 2 38 38 H 1.07997 * 120.00212 * 180.27429 * 19 18 17 39 39 H 1.08997 * 109.47051 * 60.00091 * 22 21 20 40 40 H 1.09003 * 109.47351 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47019 * 299.99731 * 22 21 20 42 42 H 1.08003 * 119.99951 * 179.97438 * 24 20 19 43 43 H 1.07997 * 120.00269 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 2.6610 0.4203 -4.7694 8 16 3.2694 -0.4731 -6.2212 9 6 3.2447 0.8253 -7.4121 10 1 2.9160 1.8136 -7.1267 11 6 3.6488 0.5781 -8.7168 12 7 4.0500 -0.6264 -9.0645 13 14 3.6220 1.9544 -9.9794 14 1 3.1332 3.2027 -9.3407 15 1 4.9942 2.1716 -10.5040 16 1 2.7178 1.5831 -11.0973 17 6 2.0323 -0.7106 1.2304 18 6 2.0614 -2.0920 1.2673 19 6 2.5271 -2.7437 2.3939 20 6 2.9531 -2.0140 3.4879 21 16 3.5399 -2.8447 4.9267 22 6 2.0346 -3.0609 5.9156 23 8 4.3738 -1.8712 5.5402 24 6 2.9191 -0.6325 3.4530 25 6 2.4586 0.0192 2.3243 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 1.6653 0.8133 -4.9751 35 1 3.3369 1.2443 -4.5408 36 1 4.3327 -0.7991 -9.9762 37 1 1.7237 -2.6623 0.4145 38 1 2.5540 -3.8230 2.4211 39 1 1.3132 -3.6545 5.3541 40 1 2.2811 -3.5736 6.8454 41 1 1.6049 -2.0849 6.1414 42 1 3.2515 -0.0624 4.3079 43 1 2.4316 1.0985 2.2971 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271854250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:03 Heat of formation + Delta-G solvation = -54.713495 kcal Electronic energy + Delta-G solvation = -21700.396518 eV Core-core repulsion = 18382.553309 eV Total energy + Delta-G solvation = -3317.843209 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58243 -38.00084 -36.87643 -35.00697 -34.59352 -32.05572 -31.71712 -30.06825 -29.54109 -27.85236 -26.36690 -24.40892 -23.70353 -22.34145 -21.39489 -19.55354 -19.08834 -17.81979 -17.15405 -16.90200 -16.87783 -16.30318 -16.17056 -15.80069 -15.51876 -15.25321 -15.08964 -14.83329 -14.60190 -14.41353 -14.11225 -13.80717 -13.68277 -13.51213 -13.42469 -13.20346 -12.96309 -12.89977 -12.84764 -12.70987 -12.46583 -12.29986 -12.07823 -12.03879 -11.67690 -11.37189 -11.23113 -11.15642 -10.31854 -10.06707 -9.92151 -9.48304 -9.32905 -8.66042 -8.37886 -6.13701 -0.10191 0.40542 0.97705 1.31288 1.37763 1.48863 1.74623 1.80375 2.27836 2.62905 2.96275 2.99101 3.07524 3.33829 3.60510 3.87220 4.02179 4.03916 4.18754 4.25407 4.31706 4.32779 4.42806 4.48565 4.49574 4.52750 4.62489 4.74124 4.78624 4.83486 4.87956 4.94569 5.06359 5.17540 5.18115 5.27021 5.29955 5.31518 5.32833 5.39664 5.53364 5.97493 6.02148 6.17926 6.38027 7.04573 8.71715 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030809 B = 0.001685 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.600911 B =16614.442201 C =16928.513906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.121 3.879 3 H 0.048 0.952 4 N -0.678 5.678 5 C 0.075 3.925 6 C -0.082 4.082 7 C -0.089 4.089 8 S -0.194 6.194 9 C -0.540 4.540 10 H 0.071 0.929 11 C 0.015 3.985 12 N -0.906 5.906 13 Si 0.994 3.006 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.270 1.270 17 C -0.059 4.059 18 C -0.123 4.123 19 C -0.034 4.034 20 C -0.471 4.471 21 S 1.395 4.605 22 C -0.496 4.496 23 O -0.931 6.931 24 C -0.080 4.080 25 C -0.143 4.143 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.347 0.653 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.272 0.728 37 H 0.149 0.851 38 H 0.186 0.814 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.059 0.941 42 H 0.105 0.895 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -7.899 29.061 30.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.011 3.989 3 H 0.066 0.934 4 N -0.310 5.310 5 C -0.056 4.056 6 C -0.121 4.121 7 C -0.239 4.239 8 S 0.034 5.966 9 C -0.688 4.688 10 H 0.089 0.911 11 C -0.190 4.190 12 N -0.543 5.543 13 Si 0.816 3.184 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.196 1.196 17 C -0.060 4.060 18 C -0.142 4.142 19 C -0.053 4.053 20 C -0.567 4.567 21 S 1.594 4.406 22 C -0.654 4.654 23 O -0.927 6.927 24 C -0.100 4.100 25 C -0.163 4.163 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.165 0.835 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.160 0.840 40 H 0.139 0.861 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.021 -9.595 28.858 31.001 hybrid contribution -0.477 4.999 -0.172 5.025 sum -6.498 -4.595 28.686 29.770 Atomic orbital electron populations 1.21750 0.92676 1.02893 1.01609 1.20499 0.96732 0.95082 0.86537 0.93419 1.60595 1.33877 1.32938 1.03585 1.21870 1.00755 0.93413 0.89555 1.21103 1.01809 0.97511 0.91636 1.23163 1.02262 1.01206 0.97251 1.84601 1.86265 1.20866 1.04839 1.23084 1.51331 0.97123 0.97227 0.91057 1.26059 0.93813 0.99170 0.99921 1.70156 1.42080 1.22212 1.19824 0.84972 0.78372 0.77680 0.77376 1.18807 1.19670 1.19565 1.20200 0.96191 0.95150 0.94460 1.21495 0.99531 0.93480 0.99681 1.21414 0.91835 1.02054 0.89970 1.27890 1.12390 1.01055 1.15409 1.68622 0.82097 1.06993 0.82892 1.27752 1.17895 1.06792 1.12955 1.92983 1.58913 1.64428 1.76337 1.21056 0.96106 0.95059 0.97747 1.21185 1.00982 1.00264 0.93822 0.91500 0.91985 0.92439 0.83451 0.90619 0.95165 0.91815 0.91063 0.91927 0.92310 0.91931 0.83324 0.79634 0.83973 0.86130 0.92162 0.87726 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.39 71.98 0.68 -1.56 16 2 C 0.12 2.23 2.82 44.17 0.12 2.35 16 3 H 0.05 0.93 7.66 -2.39 -0.02 0.91 16 4 N -0.68 -13.85 5.70 -495.45 -2.83 -16.68 16 5 C 0.07 1.82 5.48 86.30 0.47 2.29 16 6 C -0.08 -2.52 5.48 30.59 0.17 -2.35 16 7 C -0.09 -3.55 5.67 71.98 0.41 -3.15 16 8 S -0.19 -10.34 21.44 -56.49 -1.21 -11.55 16 9 C -0.54 -31.37 9.50 67.95 0.65 -30.73 16 10 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 11 C 0.02 0.88 5.49 84.86 0.47 1.34 16 12 N -0.91 -54.72 13.22 21.65 0.29 -54.43 16 13 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 17 C -0.06 -1.06 4.71 -19.87 -0.09 -1.15 16 18 C -0.12 -1.74 9.01 22.27 0.20 -1.54 16 19 C -0.03 -0.34 9.75 22.27 0.22 -0.12 16 20 C -0.47 -6.80 5.61 22.27 0.12 -6.68 16 21 S 1.40 13.70 14.19 -56.49 -0.80 12.90 16 22 C -0.50 -3.34 10.70 113.37 1.21 -2.13 16 23 O -0.93 -23.63 16.90 -148.98 -2.52 -26.15 16 24 C -0.08 -1.66 9.44 22.27 0.21 -1.45 16 25 C -0.14 -2.82 9.67 22.27 0.22 -2.60 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.03 7.45 -2.38 -0.02 1.01 16 29 H 0.35 6.83 8.00 -89.69 -0.72 6.12 16 30 H 0.08 1.82 7.44 -2.39 -0.02 1.80 16 31 H 0.03 0.74 8.06 -2.39 -0.02 0.72 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.06 2.32 8.14 -2.40 -0.02 2.30 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.15 1.87 7.73 -2.91 -0.02 1.85 16 38 H 0.19 -0.04 8.06 -2.91 -0.02 -0.07 16 39 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 2.50 7.46 -2.91 -0.02 2.48 16 43 H 0.12 2.24 8.04 -2.91 -0.02 2.21 16 Total: -1.00 -82.10 384.32 0.28 -81.82 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.27 Total: 15.48 kcal Atomic # 6 Polarization: -52.52 SS G_CDS: 5.05 Total: -47.47 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -2.54 Total: -71.11 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -2.52 Total: -26.15 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.01 Total: 1.35 kcal Total: -82.10 0.28 -81.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271854250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.104 kcal (2) G-P(sol) polarization free energy of solvation -82.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds