Wall clock time and date at job start Tue Mar 31 2020 15:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 S 1.80997 * 109.47641 * 179.97438 * 7 6 5 9 9 C 1.76204 * 100.00365 * 180.02562 * 8 7 6 10 10 H 1.07992 * 119.99729 * 0.02562 * 9 8 7 11 11 C 1.38797 * 119.99828 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00295 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99600 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46911 * 60.00642 * 13 11 9 15 15 H 1.48499 * 109.46881 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47291 * 300.00337 * 13 11 9 17 17 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 18 18 C 1.38227 * 120.00582 * 79.72444 * 17 2 1 19 19 C 1.38235 * 120.00158 * 179.76871 * 18 17 2 20 20 C 1.38227 * 119.99859 * 0.50593 * 19 18 17 21 21 S 1.76208 * 120.00177 * 179.72554 * 20 19 18 22 22 C 1.81403 * 102.99881 * 270.02387 * 21 20 19 23 23 O 1.42101 * 102.99406 * 23.87264 * 21 20 19 24 24 C 1.38234 * 120.00044 * 359.74781 * 20 19 18 25 25 C 1.38229 * 120.00220 * 359.97438 * 24 20 19 26 26 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 27 27 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 28 28 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 33 33 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 36 36 H 0.96999 * 119.99948 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.99741 * 359.97438 * 18 17 2 38 38 H 1.08006 * 119.99734 * 180.22693 * 19 18 17 39 39 H 1.09004 * 109.47098 * 59.99579 * 22 21 20 40 40 H 1.08994 * 109.46887 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46939 * 300.00025 * 22 21 20 42 42 H 1.08003 * 119.99951 * 179.97438 * 24 20 19 43 43 H 1.07997 * 120.00269 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 2.6610 0.4203 -4.7694 8 16 3.2694 -0.4731 -6.2212 9 6 3.2447 0.8253 -7.4121 10 1 2.9160 1.8136 -7.1267 11 6 3.6488 0.5781 -8.7168 12 7 4.0500 -0.6264 -9.0645 13 14 3.6220 1.9544 -9.9794 14 1 4.5121 3.0552 -9.5307 15 1 4.0965 1.4355 -11.2874 16 1 2.2357 2.4665 -10.1241 17 6 2.0323 -0.7106 1.2304 18 6 2.0614 -2.0920 1.2673 19 6 2.5267 -2.7437 2.3941 20 6 2.9531 -2.0140 3.4879 21 16 3.5394 -2.8447 4.9270 22 6 2.0336 -3.0609 5.9153 23 8 3.9584 -4.1045 4.4204 24 6 2.9191 -0.6325 3.4530 25 6 2.4592 0.0192 2.3241 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 1.6653 0.8133 -4.9751 35 1 3.3369 1.2443 -4.5408 36 1 4.3327 -0.7991 -9.9762 37 1 1.7237 -2.6623 0.4145 38 1 2.5529 -3.8231 2.4215 39 1 1.3124 -3.6545 5.3534 40 1 2.2800 -3.5728 6.8455 41 1 1.6038 -2.0850 6.1408 42 1 3.2518 -0.0624 4.3078 43 1 2.4322 1.0985 2.2969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271854253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:09 Heat of formation + Delta-G solvation = -29.404358 kcal Electronic energy + Delta-G solvation = -21716.927441 eV Core-core repulsion = 18400.181718 eV Total energy + Delta-G solvation = -3316.745723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89187 -37.09462 -36.08899 -33.88171 -32.42136 -31.33256 -30.83106 -29.36458 -29.02492 -25.80274 -25.09200 -23.62807 -22.93324 -21.09305 -20.62609 -18.49927 -17.46502 -17.10664 -16.29052 -16.08317 -15.32236 -15.21128 -14.86346 -14.79200 -14.55394 -14.31077 -14.04923 -14.00206 -13.71919 -13.51441 -13.09435 -12.93235 -12.77912 -12.50655 -12.30494 -12.28120 -11.95361 -11.66165 -11.41396 -11.30312 -11.17764 -11.04032 -10.80737 -10.63433 -10.55077 -10.41001 -9.56620 -9.36360 -9.26397 -9.04412 -8.75914 -8.55281 -8.29359 -6.51747 -6.21639 -3.92064 0.52515 1.06730 1.49772 2.29571 3.21499 3.23534 3.27043 3.28340 3.54241 3.56535 4.02790 4.23664 4.34311 4.53651 4.64532 4.73822 4.81277 4.98553 5.07924 5.11526 5.14022 5.23902 5.27353 5.38460 5.45983 5.49687 5.51644 5.56139 5.64579 5.72352 5.74006 5.87502 5.91586 5.98201 6.02552 6.11657 6.22594 6.33690 6.59408 6.60934 6.73310 6.97506 7.27246 7.60903 8.37187 9.24264 10.86466 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029287 B = 0.001713 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.823092 B =16342.882269 C =16850.027744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.118 3.882 3 H 0.054 0.946 4 N -0.684 5.684 5 C 0.064 3.936 6 C -0.095 4.095 7 C -0.112 4.112 8 S -0.132 6.132 9 C -0.517 4.517 10 H 0.071 0.929 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.051 4.051 18 C -0.114 4.114 19 C -0.054 4.054 20 C -0.465 4.465 21 S 1.330 4.670 22 C -0.499 4.499 23 O -0.857 6.857 24 C -0.046 4.046 25 C -0.133 4.133 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.344 0.656 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.268 0.732 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 2.173 33.194 33.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 H 0.072 0.928 4 N -0.315 5.315 5 C -0.067 4.067 6 C -0.134 4.134 7 C -0.261 4.261 8 S 0.096 5.904 9 C -0.666 4.666 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.051 4.051 18 C -0.134 4.134 19 C -0.073 4.073 20 C -0.562 4.562 21 S 1.527 4.473 22 C -0.655 4.655 23 O -0.852 6.852 24 C -0.065 4.065 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.311 0.413 32.954 33.123 hybrid contribution -1.319 1.616 -1.743 2.719 sum -4.630 2.029 31.211 31.618 Atomic orbital electron populations 1.21784 0.93294 1.02755 1.01493 1.20534 0.96362 0.95357 0.86892 0.92766 1.60620 1.33737 1.33461 1.03730 1.22089 1.00779 0.93614 0.90186 1.21239 1.01655 0.98376 0.92154 1.23217 1.02811 1.01146 0.98967 1.84652 1.85346 1.18787 1.01585 1.22652 1.51098 0.96712 0.96111 0.91040 1.25017 0.94625 0.96426 0.97731 1.70015 1.41242 1.20061 1.19189 0.86222 0.78650 0.81065 0.79580 1.19964 1.20801 1.19947 1.20232 0.95537 0.94131 0.95222 1.21228 0.99526 0.94104 0.98511 1.21152 0.93489 1.00094 0.92543 1.27616 1.12737 1.02291 1.13518 1.69446 0.91219 0.96210 0.90403 1.27771 1.18396 1.08172 1.11171 1.93128 1.72024 1.42593 1.77488 1.20770 0.95593 0.92256 0.97888 1.21167 1.00430 1.00032 0.93575 0.92629 0.91944 0.91777 0.83768 0.90938 0.95256 0.91825 0.90711 0.92123 0.92361 0.92252 0.84633 0.85596 0.90004 0.87697 0.87129 0.84661 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.39 37.16 0.35 -0.92 16 2 C 0.12 1.16 2.82 -68.86 -0.19 0.96 16 3 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 4 N -0.68 -7.96 5.70 -107.95 -0.62 -8.57 16 5 C 0.06 0.83 5.48 -3.83 -0.02 0.81 16 6 C -0.10 -1.57 5.48 -26.74 -0.15 -1.72 16 7 C -0.11 -2.28 5.67 37.15 0.21 -2.07 16 8 S -0.13 -3.51 21.44 -107.50 -2.30 -5.81 16 9 C -0.52 -15.02 9.50 30.94 0.29 -14.72 16 10 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 11 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 12 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 13 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 C -0.05 -0.48 4.71 -104.63 -0.49 -0.97 16 18 C -0.11 -1.19 9.01 -39.59 -0.36 -1.55 16 19 C -0.05 -0.57 9.44 -39.59 -0.37 -0.94 16 20 C -0.46 -3.68 5.61 -39.59 -0.22 -3.90 16 21 S 1.33 7.45 14.19 -107.50 -1.53 5.92 16 22 C -0.50 -2.27 10.70 101.05 1.08 -1.19 16 23 O -0.86 -10.88 16.90 -35.23 -0.60 -11.48 16 24 C -0.05 -0.28 9.75 -39.59 -0.39 -0.66 16 25 C -0.13 -1.00 9.67 -39.58 -0.38 -1.38 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.61 7.45 -51.92 -0.39 0.22 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.34 3.99 8.00 -39.29 -0.31 3.68 16 30 H 0.07 0.95 7.44 -51.93 -0.39 0.56 16 31 H 0.03 0.38 8.06 -51.93 -0.42 -0.04 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.14 1.45 7.73 -52.48 -0.41 1.05 16 38 H 0.13 1.46 7.46 -52.48 -0.39 1.07 16 39 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.14 0.23 8.06 -52.48 -0.42 -0.19 16 43 H 0.13 0.72 8.04 -52.49 -0.42 0.30 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -37.39 384.33 -11.17 -48.56 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.89 Total: 0.76 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -0.74 Total: -26.31 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.12 Total: -34.11 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.60 Total: -11.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -3.83 Total: 0.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.39 -11.17 -48.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271854253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.151 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds