Wall clock time and date at job start Tue Mar 31 2020 15:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 5 5 C 1.46899 * 111.00029 * 85.00270 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47482 * 179.97438 * 6 5 4 8 8 S 1.80997 * 109.47641 * 179.97438 * 7 6 5 9 9 C 1.76204 * 100.00365 * 180.02562 * 8 7 6 10 10 H 1.07992 * 119.99729 * 0.02562 * 9 8 7 11 11 C 1.38797 * 119.99828 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00295 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99600 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46911 * 60.00642 * 13 11 9 15 15 H 1.48499 * 109.46881 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47291 * 300.00337 * 13 11 9 17 17 C 1.50699 * 109.47156 * 120.00804 * 2 1 3 18 18 C 1.38227 * 120.00582 * 79.72444 * 17 2 1 19 19 C 1.38235 * 120.00158 * 179.76871 * 18 17 2 20 20 C 1.38227 * 119.99859 * 0.50593 * 19 18 17 21 21 S 1.76208 * 120.00177 * 179.72554 * 20 19 18 22 22 C 1.81403 * 102.99881 * 270.02387 * 21 20 19 23 23 O 1.42101 * 102.99406 * 23.87264 * 21 20 19 24 24 C 1.38234 * 120.00044 * 359.74781 * 20 19 18 25 25 C 1.38229 * 120.00220 * 359.97438 * 24 20 19 26 26 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 27 27 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 28 28 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.00908 * 110.99583 * 208.95182 * 4 2 1 30 30 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 31 31 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 32 32 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 33 33 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 34 34 H 1.09002 * 109.47103 * 300.00247 * 7 6 5 35 35 H 1.09001 * 109.47066 * 60.00169 * 7 6 5 36 36 H 0.96999 * 119.99948 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.99741 * 359.97438 * 18 17 2 38 38 H 1.08006 * 119.99734 * 180.22693 * 19 18 17 39 39 H 1.09004 * 109.47098 * 59.99579 * 22 21 20 40 40 H 1.08994 * 109.46887 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46939 * 300.00025 * 22 21 20 42 42 H 1.08003 * 119.99951 * 179.97438 * 24 20 19 43 43 H 1.07997 * 120.00269 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5961 -0.5327 -3.5742 7 6 2.6610 0.4203 -4.7694 8 16 3.2694 -0.4731 -6.2212 9 6 3.2447 0.8253 -7.4121 10 1 2.9160 1.8136 -7.1267 11 6 3.6488 0.5781 -8.7168 12 7 4.0500 -0.6264 -9.0645 13 14 3.6220 1.9544 -9.9794 14 1 4.5121 3.0552 -9.5307 15 1 4.0965 1.4355 -11.2874 16 1 2.2357 2.4665 -10.1241 17 6 2.0323 -0.7106 1.2304 18 6 2.0614 -2.0920 1.2673 19 6 2.5267 -2.7437 2.3941 20 6 2.9531 -2.0140 3.4879 21 16 3.5394 -2.8447 4.9270 22 6 2.0336 -3.0609 5.9153 23 8 3.9584 -4.1045 4.4204 24 6 2.9191 -0.6325 3.4530 25 6 2.4592 0.0192 2.3241 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 2.9173 -1.1205 -1.0288 30 1 1.0870 0.6165 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 3.5916 -0.9261 -3.3684 33 1 1.9201 -1.3565 -3.8032 34 1 1.6653 0.8133 -4.9751 35 1 3.3369 1.2443 -4.5408 36 1 4.3327 -0.7991 -9.9762 37 1 1.7237 -2.6623 0.4145 38 1 2.5529 -3.8231 2.4215 39 1 1.3124 -3.6545 5.3534 40 1 2.2800 -3.5728 6.8455 41 1 1.6038 -2.0850 6.1408 42 1 3.2518 -0.0624 4.3078 43 1 2.4322 1.0985 2.2969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271854253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:08 Heat of formation + Delta-G solvation = -55.108072 kcal Electronic energy + Delta-G solvation = -21718.042038 eV Core-core repulsion = 18400.181718 eV Total energy + Delta-G solvation = -3317.860320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57178 -38.00492 -36.88042 -35.02071 -34.60340 -32.03179 -31.74198 -30.06982 -29.54115 -27.86396 -26.37454 -24.41138 -23.69726 -22.36551 -21.38111 -19.56538 -19.07975 -17.81669 -17.12999 -16.90755 -16.89624 -16.30957 -16.19709 -15.79213 -15.48843 -15.28988 -15.13977 -14.83788 -14.57971 -14.27563 -14.21001 -13.82057 -13.69825 -13.49042 -13.42765 -13.20842 -12.95943 -12.91160 -12.85823 -12.68274 -12.49951 -12.32260 -12.07971 -12.05056 -11.70100 -11.39602 -11.22876 -11.14516 -10.33909 -10.05938 -9.90902 -9.47087 -9.33568 -8.68941 -8.38259 -6.15443 -0.09506 0.42437 0.98731 1.30156 1.40218 1.47120 1.72699 1.80640 2.27463 2.63382 2.95770 3.00645 3.08168 3.32896 3.60851 3.86245 3.99292 4.09754 4.16807 4.26765 4.30210 4.32676 4.43029 4.48407 4.50727 4.51396 4.63065 4.72691 4.75929 4.83272 4.86814 4.93914 5.09154 5.15029 5.17344 5.25770 5.28515 5.31030 5.32327 5.37889 5.53157 5.97708 6.06128 6.16561 6.33297 7.03390 8.70957 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.029287 B = 0.001713 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.823092 B =16342.882269 C =16850.027744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.121 3.879 3 H 0.068 0.932 4 N -0.691 5.691 5 C 0.078 3.922 6 C -0.085 4.085 7 C -0.086 4.086 8 S -0.203 6.203 9 C -0.539 4.539 10 H 0.074 0.926 11 C 0.014 3.986 12 N -0.908 5.908 13 Si 0.996 3.004 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.264 1.264 17 C -0.061 4.061 18 C -0.130 4.130 19 C -0.084 4.084 20 C -0.472 4.472 21 S 1.397 4.603 22 C -0.496 4.496 23 O -0.932 6.932 24 C -0.033 4.033 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.343 0.657 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.120 0.880 41 H 0.144 0.856 42 H 0.191 0.809 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 5.553 35.549 36.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.086 0.914 4 N -0.323 5.323 5 C -0.053 4.053 6 C -0.124 4.124 7 C -0.235 4.235 8 S 0.026 5.974 9 C -0.687 4.687 10 H 0.092 0.908 11 C -0.191 4.191 12 N -0.545 5.545 13 Si 0.817 3.183 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.189 1.189 17 C -0.062 4.062 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.568 4.568 21 S 1.596 4.404 22 C -0.654 4.654 23 O -0.928 6.928 24 C -0.051 4.051 25 C -0.152 4.152 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.162 0.838 42 H 0.208 0.792 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.624 3.789 35.312 35.699 hybrid contribution -1.284 0.553 -2.298 2.690 sum -4.908 4.342 33.014 33.658 Atomic orbital electron populations 1.21771 0.93101 1.02036 1.02171 1.20566 0.96451 0.95699 0.86081 0.91439 1.60564 1.33829 1.33597 1.04358 1.21860 1.00948 0.93366 0.89136 1.21122 1.01475 0.97554 0.92204 1.23137 1.02416 1.01109 0.96887 1.84708 1.86300 1.21245 1.05197 1.23017 1.51511 0.97058 0.97115 0.90765 1.26112 0.93754 0.99259 1.00001 1.70161 1.42006 1.22410 1.19881 0.85040 0.79211 0.77530 0.76474 1.18791 1.19996 1.18869 1.20257 0.96409 0.93486 0.96002 1.21111 1.00765 0.94941 0.98162 1.21089 0.95799 0.99200 0.94211 1.27892 1.12113 1.03542 1.13269 1.68482 0.90634 0.93190 0.88142 1.27757 1.16727 1.09983 1.10954 1.92997 1.74984 1.46095 1.78762 1.21393 0.93292 0.91383 0.99062 1.21580 0.99179 1.01437 0.92998 0.90793 0.92360 0.93217 0.83874 0.90488 0.94235 0.92179 0.91862 0.91780 0.91795 0.91971 0.86393 0.88279 0.92363 0.86152 0.83774 0.79217 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.39 71.98 0.68 -1.63 16 2 C 0.12 2.18 2.82 44.17 0.12 2.30 16 3 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 4 N -0.69 -15.73 5.70 -495.45 -2.83 -18.55 16 5 C 0.08 1.94 5.48 86.30 0.47 2.41 16 6 C -0.08 -2.77 5.48 30.59 0.17 -2.61 16 7 C -0.09 -3.49 5.67 71.98 0.41 -3.08 16 8 S -0.20 -11.08 21.44 -56.49 -1.21 -12.29 16 9 C -0.54 -31.62 9.50 67.95 0.65 -30.97 16 10 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 11 C 0.01 0.78 5.49 84.86 0.47 1.25 16 12 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 13 Si 1.00 44.28 29.55 68.60 2.03 46.30 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 17 C -0.06 -1.07 4.71 -19.87 -0.09 -1.16 16 18 C -0.13 -2.85 9.01 22.27 0.20 -2.64 16 19 C -0.08 -1.87 9.44 22.27 0.21 -1.66 16 20 C -0.47 -6.83 5.61 22.27 0.12 -6.70 16 21 S 1.40 13.83 14.19 -56.49 -0.80 13.03 16 22 C -0.50 -3.39 10.70 113.37 1.21 -2.17 16 23 O -0.93 -24.62 16.90 -148.98 -2.52 -27.14 16 24 C -0.03 -0.27 9.75 22.27 0.22 -0.05 16 25 C -0.13 -1.54 9.67 22.27 0.22 -1.32 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.05 7.45 -2.38 -0.02 1.03 16 28 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.34 7.97 8.00 -89.69 -0.72 7.25 16 30 H 0.08 1.88 7.44 -2.39 -0.02 1.86 16 31 H 0.04 0.92 8.06 -2.39 -0.02 0.90 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.12 2.84 7.73 -2.91 -0.02 2.81 16 38 H 0.10 2.64 7.46 -2.91 -0.02 2.62 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.14 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.19 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.16 0.95 8.04 -2.91 -0.02 0.93 16 Total: -1.00 -85.35 384.33 0.28 -85.08 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.27 Total: 17.11 kcal Atomic # 6 Polarization: -53.11 SS G_CDS: 5.05 Total: -48.06 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -2.54 Total: -74.04 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -2.52 Total: -27.14 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.01 Total: 0.74 kcal Total: -85.35 0.28 -85.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271854253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.968 kcal (2) G-P(sol) polarization free energy of solvation -85.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds