Wall clock time and date at job start Tue Mar 31 2020 15:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99860 * 2 1 4 4 O 1.20821 * 120.00490 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47140 * 184.40091 * 5 3 2 7 7 N 1.46508 * 109.47121 * 186.05663 * 6 5 3 8 8 C 1.46500 * 119.99836 * 337.66309 * 7 6 5 9 9 C 1.50703 * 109.47067 * 270.92312 * 8 7 6 10 10 C 1.38259 * 119.95943 * 276.07884 * 9 8 7 11 11 C 1.38217 * 120.06865 * 179.76973 * 10 9 8 12 12 C 1.38413 * 119.99575 * 0.50561 * 11 10 9 13 13 F 1.35098 * 120.03253 * 179.72413 * 12 11 10 14 14 C 1.38648 * 119.93332 * 359.75065 * 12 11 10 15 15 F 1.35102 * 120.03780 * 180.02562 * 14 12 11 16 16 C 1.38210 * 119.96681 * 96.35572 * 9 8 7 17 17 C 1.34775 * 120.00260 * 157.66595 * 7 6 5 18 18 O 1.21682 * 119.99974 * 183.20234 * 17 7 6 19 19 C 1.46374 * 119.99564 * 3.47342 * 17 7 6 20 20 H 1.08008 * 119.99580 * 132.29123 * 19 17 7 21 21 C 1.40047 * 120.00757 * 312.29280 * 19 17 7 22 22 N 1.30679 * 119.99403 * 340.79464 * 21 19 17 23 23 Si 1.86796 * 120.00277 * 160.79249 * 21 19 17 24 24 H 1.48503 * 109.47114 * 90.00299 * 23 21 19 25 25 H 1.48508 * 109.46926 * 210.00019 * 23 21 19 26 26 H 1.48499 * 109.47212 * 329.99758 * 23 21 19 27 27 H 1.08999 * 109.47350 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46952 * 299.99513 * 1 2 3 29 29 H 1.08995 * 109.47139 * 59.99531 * 1 2 3 30 30 H 1.09007 * 109.46421 * 64.40293 * 5 3 2 31 31 H 1.08999 * 109.47492 * 304.40895 * 5 3 2 32 32 H 1.08996 * 109.47038 * 66.05852 * 6 5 3 33 33 H 1.09002 * 109.47541 * 306.05436 * 6 5 3 34 34 H 1.09000 * 109.47083 * 30.91661 * 8 7 6 35 35 H 1.08992 * 109.47213 * 150.91862 * 8 7 6 36 36 H 1.07997 * 119.96611 * 0.02562 * 10 9 8 37 37 H 1.07991 * 119.99884 * 180.25717 * 11 10 9 38 38 H 1.07998 * 119.99959 * 359.95445 * 16 9 8 39 39 H 0.96997 * 119.99509 * 178.10734 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0003 2.7378 0.1111 7 7 5.4555 2.8277 -0.0334 8 6 6.2925 1.6570 0.2402 9 6 6.6714 1.6402 1.6988 10 6 7.7538 2.3788 2.1395 11 6 8.1004 2.3688 3.4775 12 6 7.3698 1.6105 4.3759 13 9 7.7113 1.5958 5.6829 14 6 6.2875 0.8656 3.9330 15 9 5.5726 0.1252 4.8082 16 6 5.9399 0.8820 2.5934 17 6 6.0241 3.9876 -0.4181 18 8 7.2266 4.0465 -0.5945 19 6 5.1958 5.1777 -0.6178 20 1 5.4941 6.1218 -0.1862 21 6 4.0166 5.0925 -1.3684 22 7 3.8361 4.0926 -2.1902 23 14 2.7017 6.4079 -1.1950 24 1 2.9544 7.4929 -2.1770 25 1 1.3666 5.8100 -1.4505 26 1 2.7388 6.9665 0.1804 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.9527 0.8502 -0.9261 31 1 3.9593 0.7141 0.8487 32 1 3.7069 3.1312 1.0843 33 1 3.5204 3.3197 -0.6758 34 1 5.7387 0.7498 -0.0017 35 1 7.1950 1.7051 -0.3690 36 1 8.3267 2.9674 1.4383 37 1 8.9436 2.9494 3.8212 38 1 5.0968 0.3025 2.2471 39 1 3.0079 4.0187 -2.6896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274738222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:07 Heat of formation + Delta-G solvation = -172.508001 kcal Electronic energy + Delta-G solvation = -28465.774637 eV Core-core repulsion = 24010.397122 eV Total energy + Delta-G solvation = -4455.377515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.34214 -48.42174 -40.28259 -39.29039 -37.78476 -36.35166 -34.74082 -33.47316 -31.41519 -30.78998 -30.04193 -27.57441 -27.02625 -25.34041 -23.24419 -23.10107 -21.70605 -20.36804 -19.23821 -17.92348 -17.78646 -16.97287 -16.84731 -16.69151 -16.48340 -16.18157 -16.13146 -15.34000 -14.86027 -14.82743 -14.71545 -14.36432 -14.30943 -14.10182 -13.65391 -13.28970 -13.12030 -12.79986 -12.55873 -12.38943 -12.11139 -11.96595 -11.76452 -11.59883 -11.48127 -11.24095 -11.08424 -10.90968 -10.69685 -10.57989 -10.51166 -10.37348 -10.16006 -8.96494 -8.72579 -8.51806 -7.97850 -7.31123 -6.72696 -4.78176 1.06232 1.14897 2.46258 2.85140 3.06089 3.19831 3.22984 3.48734 3.90558 3.99882 4.20604 4.40690 4.51640 4.66651 4.89627 5.07827 5.10485 5.12317 5.17299 5.20618 5.25858 5.39412 5.50081 5.53931 5.63220 5.80770 5.87970 5.95115 6.09345 6.23152 6.30125 6.51575 6.64255 6.70586 6.91845 7.12091 7.33337 7.50413 7.94758 7.99142 8.30182 8.76869 9.06716 10.06920 10.27800 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.005236 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.694354 B = 5346.472802 C = 7229.644514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.465 3.535 4 O -0.497 6.497 5 C -0.124 4.124 6 C 0.092 3.908 7 N -0.603 5.603 8 C 0.142 3.858 9 C -0.067 4.067 10 C -0.075 4.075 11 C -0.127 4.127 12 C 0.056 3.944 13 F -0.136 7.136 14 C 0.060 3.940 15 F -0.135 7.135 16 C -0.123 4.123 17 C 0.612 3.388 18 O -0.618 6.618 19 C -0.540 4.540 20 H 0.093 0.907 21 C 0.084 3.916 22 N -0.819 5.819 23 Si 0.898 3.102 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.262 1.262 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.156 0.844 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 -9.891 5.969 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.383 6.383 5 C -0.162 4.162 6 C -0.031 4.031 7 N -0.336 5.336 8 C 0.018 3.982 9 C -0.069 4.069 10 C -0.093 4.093 11 C -0.146 4.146 12 C 0.035 3.965 13 F -0.115 7.115 14 C 0.040 3.960 15 F -0.113 7.113 16 C -0.142 4.142 17 C 0.414 3.586 18 O -0.504 6.504 19 C -0.577 4.577 20 H 0.111 0.889 21 C -0.125 4.125 22 N -0.454 5.454 23 Si 0.722 3.278 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.186 1.186 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.172 0.828 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.168 0.832 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.127 -9.617 5.783 11.422 hybrid contribution -1.203 0.268 0.656 1.396 sum -3.329 -9.349 6.439 11.830 Atomic orbital electron populations 1.23196 0.76955 1.03199 1.02499 1.86509 1.23032 1.34113 1.84660 1.23796 0.92159 0.81091 0.72265 1.90683 1.67114 1.36152 1.44366 1.21803 0.86961 1.02552 1.04877 1.22515 0.82181 0.92824 1.05550 1.47883 1.05035 1.10574 1.70105 1.20250 0.97683 0.90948 0.89291 1.20573 0.93848 0.94471 0.97980 1.21312 0.96425 0.96886 0.94717 1.21118 1.00769 0.99595 0.93122 1.17675 0.97350 1.02358 0.79076 1.91489 1.91716 1.95468 1.32780 1.17612 0.93271 0.96827 0.88248 1.91496 1.76785 1.74650 1.68417 1.21002 1.01325 1.01662 0.90245 1.18074 0.86335 0.81639 0.72511 1.90487 1.17577 1.85057 1.57255 1.20999 1.06608 0.95345 1.34750 0.88878 1.25513 0.97891 0.96309 0.92800 1.69622 1.26248 1.30662 1.18863 0.86472 0.80241 0.81204 0.79877 1.19673 1.19705 1.18597 0.88477 0.92097 0.91985 0.87138 0.89171 0.94218 0.82842 0.90695 0.88916 0.83155 0.83953 0.84178 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.13 10.57 -39.25 -0.41 -5.54 16 3 C 0.46 7.72 7.95 36.01 0.29 8.00 16 4 O -0.50 -9.78 15.61 -18.75 -0.29 -10.07 16 5 C -0.12 -1.98 4.50 -27.89 -0.13 -2.10 16 6 C 0.09 1.88 4.60 -4.04 -0.02 1.86 16 7 N -0.60 -12.86 2.82 -176.72 -0.50 -13.36 16 8 C 0.14 2.45 5.11 -5.19 -0.03 2.42 16 9 C -0.07 -1.05 5.46 -104.62 -0.57 -1.63 16 10 C -0.07 -1.18 9.72 -39.58 -0.38 -1.57 16 11 C -0.13 -1.80 10.02 -39.52 -0.40 -2.20 16 12 C 0.06 0.83 7.31 -39.37 -0.29 0.54 16 13 F -0.14 -2.05 17.18 2.25 0.04 -2.01 16 14 C 0.06 0.91 7.31 -39.37 -0.29 0.62 16 15 F -0.13 -2.05 17.18 2.25 0.04 -2.01 16 16 C -0.12 -1.77 9.44 -39.53 -0.37 -2.14 16 17 C 0.61 15.77 7.05 -12.99 -0.09 15.68 16 18 O -0.62 -17.00 15.95 5.20 0.08 -16.92 16 19 C -0.54 -14.27 9.03 -35.63 -0.32 -14.59 16 20 H 0.09 2.46 7.92 -52.48 -0.42 2.05 16 21 C 0.08 2.08 3.66 -17.36 -0.06 2.02 16 22 N -0.82 -20.24 10.77 55.55 0.60 -19.64 16 23 Si 0.90 19.29 29.60 -169.99 -5.03 14.26 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.26 -5.62 7.11 56.52 0.40 -5.21 16 27 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.11 1.68 7.66 -51.93 -0.40 1.28 16 31 H 0.09 1.21 5.16 -51.93 -0.27 0.94 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.16 3.56 2.68 -63.32 -0.17 3.39 16 34 H 0.07 1.06 5.54 -51.93 -0.29 0.77 16 35 H 0.09 1.69 7.33 -51.93 -0.38 1.31 16 36 H 0.15 2.56 7.34 -52.49 -0.39 2.18 16 37 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.14 1.73 6.12 -52.49 -0.32 1.41 16 39 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -30.02 341.38 -5.80 -35.83 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.87 Total: 5.97 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.60 Total: 8.38 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.10 Total: -33.01 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.62 Total: -32.54 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.08 Total: -4.03 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.02 -5.80 -35.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274738222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.682 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds