Wall clock time and date at job start Tue Mar 31 2020 15:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99860 * 2 1 4 4 O 1.20821 * 120.00490 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99809 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47140 * 184.40091 * 5 3 2 7 7 N 1.46508 * 109.47121 * 186.05663 * 6 5 3 8 8 C 1.46500 * 119.99836 * 337.66309 * 7 6 5 9 9 C 1.50703 * 109.47067 * 270.92312 * 8 7 6 10 10 C 1.38259 * 119.95943 * 276.07884 * 9 8 7 11 11 C 1.38217 * 120.06865 * 179.76973 * 10 9 8 12 12 C 1.38413 * 119.99575 * 0.50561 * 11 10 9 13 13 F 1.35098 * 120.03253 * 179.72413 * 12 11 10 14 14 C 1.38648 * 119.93332 * 359.75065 * 12 11 10 15 15 F 1.35102 * 120.03780 * 180.02562 * 14 12 11 16 16 C 1.38210 * 119.96681 * 96.35572 * 9 8 7 17 17 C 1.34775 * 120.00260 * 157.66595 * 7 6 5 18 18 O 1.21682 * 119.99974 * 183.20234 * 17 7 6 19 19 C 1.46374 * 119.99564 * 3.47342 * 17 7 6 20 20 H 1.08008 * 119.99580 * 132.29123 * 19 17 7 21 21 C 1.40047 * 120.00757 * 312.29280 * 19 17 7 22 22 N 1.30679 * 119.99403 * 340.79464 * 21 19 17 23 23 Si 1.86796 * 120.00277 * 160.79249 * 21 19 17 24 24 H 1.48503 * 109.47114 * 90.00299 * 23 21 19 25 25 H 1.48508 * 109.46926 * 210.00019 * 23 21 19 26 26 H 1.48499 * 109.47212 * 329.99758 * 23 21 19 27 27 H 1.08999 * 109.47350 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46952 * 299.99513 * 1 2 3 29 29 H 1.08995 * 109.47139 * 59.99531 * 1 2 3 30 30 H 1.09007 * 109.46421 * 64.40293 * 5 3 2 31 31 H 1.08999 * 109.47492 * 304.40895 * 5 3 2 32 32 H 1.08996 * 109.47038 * 66.05852 * 6 5 3 33 33 H 1.09002 * 109.47541 * 306.05436 * 6 5 3 34 34 H 1.09000 * 109.47083 * 30.91661 * 8 7 6 35 35 H 1.08992 * 109.47213 * 150.91862 * 8 7 6 36 36 H 1.07997 * 119.96611 * 0.02562 * 10 9 8 37 37 H 1.07991 * 119.99884 * 180.25717 * 11 10 9 38 38 H 1.07998 * 119.99959 * 359.95445 * 16 9 8 39 39 H 0.96997 * 119.99509 * 178.10734 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0003 2.7378 0.1111 7 7 5.4555 2.8277 -0.0334 8 6 6.2925 1.6570 0.2402 9 6 6.6714 1.6402 1.6988 10 6 7.7538 2.3788 2.1395 11 6 8.1004 2.3688 3.4775 12 6 7.3698 1.6105 4.3759 13 9 7.7113 1.5958 5.6829 14 6 6.2875 0.8656 3.9330 15 9 5.5726 0.1252 4.8082 16 6 5.9399 0.8820 2.5934 17 6 6.0241 3.9876 -0.4181 18 8 7.2266 4.0465 -0.5945 19 6 5.1958 5.1777 -0.6178 20 1 5.4941 6.1218 -0.1862 21 6 4.0166 5.0925 -1.3684 22 7 3.8361 4.0926 -2.1902 23 14 2.7017 6.4079 -1.1950 24 1 2.9544 7.4929 -2.1770 25 1 1.3666 5.8100 -1.4505 26 1 2.7388 6.9665 0.1804 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.9527 0.8502 -0.9261 31 1 3.9593 0.7141 0.8487 32 1 3.7069 3.1312 1.0843 33 1 3.5204 3.3197 -0.6758 34 1 5.7387 0.7498 -0.0017 35 1 7.1950 1.7051 -0.3690 36 1 8.3267 2.9674 1.4383 37 1 8.9436 2.9494 3.8212 38 1 5.0968 0.3025 2.2471 39 1 3.0079 4.0187 -2.6896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274738222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:07 Heat of formation + Delta-G solvation = -189.115735 kcal Electronic energy + Delta-G solvation = -28466.494802 eV Core-core repulsion = 24010.397122 eV Total energy + Delta-G solvation = -4456.097680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.53030 -49.61090 -41.56073 -40.67635 -39.35596 -37.62098 -36.48136 -35.27653 -32.76609 -32.06205 -31.42697 -28.82214 -28.53830 -26.84984 -24.69836 -24.29379 -23.03329 -21.78691 -20.86427 -19.42475 -18.99588 -18.38746 -18.11881 -17.96895 -17.72513 -17.42893 -17.36487 -17.03625 -16.58122 -16.16418 -16.03415 -15.92447 -15.52115 -15.32704 -14.83988 -14.62371 -14.57747 -14.16209 -14.06410 -13.91998 -13.54888 -13.28693 -13.11870 -13.02963 -12.95588 -12.65468 -12.53198 -12.36581 -12.31262 -12.14434 -12.06159 -11.77207 -11.48109 -10.61845 -10.13930 -9.96459 -9.66197 -9.03511 -8.61676 -6.76643 -0.16258 -0.01710 1.19019 1.32418 1.43387 1.52431 1.69643 2.19724 2.23909 2.35687 2.73100 2.94525 3.18782 3.24898 3.50598 3.68784 3.80546 3.94167 4.05151 4.11198 4.22711 4.34048 4.35295 4.36747 4.50696 4.70476 4.72695 4.73736 4.84732 4.89205 5.04958 5.11592 5.27032 5.35451 5.40036 5.61907 5.70506 5.74481 6.23899 6.32309 6.74779 6.83834 7.20465 8.15420 8.38501 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.009775 B = 0.005236 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.694354 B = 5346.472802 C = 7229.644514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.534 6.534 5 C -0.117 4.117 6 C 0.090 3.910 7 N -0.598 5.598 8 C 0.141 3.859 9 C -0.076 4.076 10 C -0.086 4.086 11 C -0.119 4.119 12 C 0.053 3.947 13 F -0.136 7.136 14 C 0.056 3.944 15 F -0.135 7.135 16 C -0.111 4.111 17 C 0.598 3.402 18 O -0.651 6.651 19 C -0.581 4.581 20 H 0.079 0.921 21 C 0.063 3.937 22 N -0.828 5.828 23 Si 0.952 3.048 24 H -0.264 1.264 25 H -0.267 1.267 26 H -0.264 1.264 27 H 0.136 0.864 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.028 0.972 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 -11.684 6.579 13.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.424 6.424 5 C -0.155 4.155 6 C -0.033 4.033 7 N -0.329 5.329 8 C 0.019 3.981 9 C -0.078 4.078 10 C -0.104 4.104 11 C -0.138 4.138 12 C 0.032 3.968 13 F -0.115 7.115 14 C 0.036 3.964 15 F -0.113 7.113 16 C -0.130 4.130 17 C 0.401 3.599 18 O -0.540 6.540 19 C -0.618 4.618 20 H 0.097 0.903 21 C -0.146 4.146 22 N -0.462 5.462 23 Si 0.774 3.226 24 H -0.189 1.189 25 H -0.192 1.192 26 H -0.188 1.188 27 H 0.154 0.846 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.046 0.954 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.150 0.850 37 H 0.182 0.818 38 H 0.183 0.817 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.541 -11.471 6.400 13.605 hybrid contribution -0.786 0.752 0.478 1.188 sum -4.328 -10.720 6.877 13.451 Atomic orbital electron populations 1.23548 0.74952 1.05732 1.02361 1.86489 1.24894 1.32344 1.83915 1.23789 0.92245 0.81281 0.71347 1.90675 1.67883 1.37510 1.46286 1.21676 0.87147 0.99786 1.06865 1.22300 0.81356 0.95722 1.03901 1.47639 1.05875 1.10632 1.68802 1.20425 0.97002 0.90559 0.90158 1.20408 0.94488 0.95535 0.97347 1.21243 0.96804 0.97172 0.95226 1.21239 1.01100 0.99213 0.92206 1.17790 0.97465 1.02404 0.79114 1.91490 1.91734 1.95468 1.32808 1.17698 0.93297 0.96862 0.88508 1.91500 1.76764 1.74629 1.68425 1.21105 1.01344 1.00977 0.89605 1.18144 0.85920 0.83056 0.72825 1.90444 1.18670 1.86003 1.58861 1.21137 1.08374 0.95645 1.36661 0.90347 1.25981 0.98662 0.98101 0.91905 1.69640 1.26695 1.31360 1.18509 0.85642 0.77962 0.79209 0.79756 1.18869 1.19176 1.18774 0.84614 0.92083 0.92393 0.85904 0.85985 0.95356 0.85100 0.87035 0.90447 0.84996 0.81769 0.81671 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -9.01 10.57 -51.38 -0.54 -9.55 16 3 C 0.47 14.61 7.95 71.24 0.57 15.17 16 4 O -0.53 -20.45 15.61 21.98 0.34 -20.11 16 5 C -0.12 -3.46 4.50 29.85 0.13 -3.32 16 6 C 0.09 3.62 4.60 86.38 0.40 4.02 16 7 N -0.60 -25.52 2.82 -831.26 -2.34 -27.86 16 8 C 0.14 4.72 5.11 85.63 0.44 5.16 16 9 C -0.08 -2.31 5.46 -19.86 -0.11 -2.42 16 10 C -0.09 -2.69 9.72 22.27 0.22 -2.47 16 11 C -0.12 -3.24 10.02 22.31 0.22 -3.01 16 12 C 0.05 1.48 7.31 22.41 0.16 1.64 16 13 F -0.14 -3.88 17.18 44.97 0.77 -3.11 16 14 C 0.06 1.57 7.31 22.41 0.16 1.73 16 15 F -0.13 -3.76 17.18 44.97 0.77 -2.99 16 16 C -0.11 -2.92 9.44 22.30 0.21 -2.71 16 17 C 0.60 31.72 7.05 86.36 0.61 32.33 16 18 O -0.65 -37.18 15.95 -4.29 -0.07 -37.25 16 19 C -0.58 -31.70 9.03 24.83 0.22 -31.47 16 20 H 0.08 4.35 7.92 -2.91 -0.02 4.32 16 21 C 0.06 3.14 3.66 85.30 0.31 3.45 16 22 N -0.83 -40.96 10.77 21.84 0.24 -40.73 16 23 Si 0.95 39.73 29.60 68.60 2.03 41.76 16 24 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.16 8.13 -2.39 -0.02 1.15 16 29 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.12 3.37 7.66 -2.38 -0.02 3.35 16 31 H 0.12 2.79 5.16 -2.39 -0.01 2.77 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 6.05 2.68 -24.88 -0.07 5.98 16 34 H 0.11 2.84 5.54 -2.39 -0.01 2.83 16 35 H 0.08 2.85 7.33 -2.39 -0.02 2.83 16 36 H 0.13 4.67 7.34 -2.91 -0.02 4.65 16 37 H 0.16 3.64 8.06 -2.92 -0.02 3.61 16 38 H 0.17 3.41 6.12 -2.91 -0.02 3.39 16 39 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 Total: -1.00 -66.31 341.38 7.01 -59.30 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 1.06 Total: 20.72 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 4.75 Total: 19.82 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -2.11 Total: -68.59 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -0.27 Total: -66.91 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 1.55 Total: -6.10 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -66.31 7.01 -59.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274738222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.816 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds