Wall clock time and date at job start Tue Mar 31 2020 14:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47688 * 249.88394 * 3 2 1 5 5 C 1.37104 * 120.00188 * 264.14803 * 4 3 2 6 6 H 1.08000 * 119.99430 * 197.42628 * 5 4 3 7 7 C 1.38946 * 120.00003 * 17.42042 * 5 4 3 8 8 N 1.31418 * 120.00122 * 21.54029 * 7 5 4 9 9 Si 1.86797 * 120.00121 * 201.53770 * 7 5 4 10 10 H 1.48503 * 109.46823 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46875 * 120.00103 * 9 7 5 12 12 H 1.48497 * 109.47430 * 240.00096 * 9 7 5 13 13 C 1.34771 * 119.99909 * 84.13939 * 4 3 2 14 14 O 1.21292 * 120.00077 * 180.02562 * 13 4 3 15 15 C 1.50706 * 120.00167 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47427 * 180.02562 * 15 13 4 17 17 C 1.52992 * 109.47205 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47481 * 179.97438 * 17 16 15 19 19 C 1.31825 * 122.55472 * 265.02801 * 18 17 16 20 20 S 1.75303 * 111.40259 * 179.97438 * 19 18 17 21 21 C 1.75896 * 92.19182 * 359.97438 * 20 19 18 22 22 C 1.39857 * 130.55893 * 179.97438 * 21 20 19 23 23 C 1.37471 * 120.17835 * 180.02562 * 22 21 20 24 24 C 1.38855 * 120.18635 * 0.02562 * 23 22 21 25 25 C 1.36096 * 120.58887 * 359.97438 * 24 23 22 26 26 C 1.39737 * 109.68599 * 359.75032 * 21 20 19 27 27 H 4.40641 * 5.51478 * 180.02562 * 4 1 2 28 28 H 1.09007 * 109.46822 * 129.88583 * 3 2 1 29 29 H 1.09001 * 109.47194 * 9.89053 * 3 2 1 30 30 H 0.96997 * 120.00389 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46437 * 59.99757 * 15 13 4 32 32 H 1.08999 * 109.47325 * 300.00222 * 15 13 4 33 33 H 1.08996 * 109.47072 * 60.00175 * 16 15 13 34 34 H 1.08999 * 109.47004 * 300.00363 * 16 15 13 35 35 H 1.09006 * 109.47359 * 59.99831 * 17 16 15 36 36 H 1.08999 * 109.47079 * 299.99880 * 17 16 15 37 37 H 1.08002 * 124.29877 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.91623 * 0.02562 * 22 21 20 39 39 H 1.07995 * 119.90799 * 179.97438 * 23 22 21 40 40 H 1.07995 * 119.70670 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.77110 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4759 1.2969 5 6 3.4764 1.7935 1.4597 6 1 4.0887 2.0928 2.2974 7 6 3.0354 2.7437 0.5468 8 7 1.9840 2.4971 -0.2021 9 14 3.9369 4.3716 0.3840 10 1 5.0794 4.4016 1.3322 11 1 4.4424 4.5208 -1.0043 12 1 3.0061 5.4862 0.6943 13 6 3.2469 -0.3821 2.3301 14 8 3.6507 0.0114 3.4040 15 6 2.8712 -1.8306 2.1511 16 6 3.0904 -2.5807 3.4665 17 6 2.7096 -4.0512 3.2846 18 6 2.9260 -4.7902 4.5800 19 6 4.0362 -5.4507 4.8429 20 16 3.9758 -6.1981 6.4275 21 6 2.3602 -5.5740 6.7347 22 6 1.5255 -5.7195 7.8474 23 6 0.2832 -5.1310 7.8611 24 6 -0.1500 -4.3893 6.7700 25 6 0.6463 -4.2352 5.6772 26 6 1.9293 -4.8230 5.6379 27 1 -1.0500 -0.0002 0.0000 28 1 3.0090 0.6599 -0.7886 29 1 3.0098 -1.0116 -0.1765 30 1 1.6759 3.1605 -0.8392 31 1 3.4921 -2.2733 1.3721 32 1 1.8222 -1.9011 1.8635 33 1 2.4693 -2.1378 4.2451 34 1 4.1393 -2.5103 3.7545 35 1 3.3310 -4.4939 2.5060 36 1 1.6608 -4.1220 2.9964 37 1 4.8762 -5.5223 4.1679 38 1 1.8577 -6.2957 8.6983 39 1 -0.3579 -5.2465 8.7224 40 1 -1.1275 -3.9307 6.7888 41 1 0.2963 -3.6551 4.8360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281023669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:29 Heat of formation + Delta-G solvation = 63.247197 kcal Electronic energy + Delta-G solvation = -23993.305422 eV Core-core repulsion = 20545.133421 eV Total energy + Delta-G solvation = -3448.172001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.78005 -38.68285 -36.44029 -35.18481 -33.22717 -32.04817 -31.19947 -31.07888 -29.61909 -27.63824 -26.34355 -24.62027 -23.27078 -22.75306 -21.70778 -19.47630 -18.79815 -18.20902 -17.84785 -16.59992 -16.07384 -15.79088 -15.56037 -15.28900 -14.93863 -14.54960 -14.21495 -14.00470 -13.90716 -13.54532 -13.45630 -12.71294 -12.62028 -12.40332 -12.25208 -12.12691 -11.86034 -11.59477 -11.38760 -11.30158 -11.05282 -10.96542 -10.80604 -10.66961 -10.47239 -10.33730 -10.25714 -9.64676 -9.35797 -9.26341 -8.89113 -8.62482 -8.37415 -7.84462 -7.73943 -6.32145 -3.83971 0.64750 1.12724 1.46203 1.91514 2.19195 3.14052 3.26216 3.33088 3.60854 3.69352 3.93836 4.05295 4.19557 4.48387 4.60508 4.78929 4.88847 5.04792 5.09451 5.12109 5.23635 5.30900 5.45209 5.45955 5.54145 5.58737 5.73752 5.75220 5.85781 5.93890 6.04322 6.05606 6.13631 6.20860 6.33409 6.40431 6.43142 6.60318 6.72593 6.74153 6.76316 7.02760 7.57886 8.08064 8.44855 8.80382 9.16319 9.38650 9.94581 10.68943 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002618 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.998239 B =10691.005305 C =11023.275077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.112 4.112 3 C 0.232 3.768 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.451 3.549 14 O -0.584 6.584 15 C -0.132 4.132 16 C -0.091 4.091 17 C -0.065 4.065 18 C -0.071 4.071 19 C -0.195 4.195 20 S 0.066 5.934 21 C -0.137 4.137 22 C -0.088 4.088 23 C -0.105 4.105 24 C -0.121 4.121 25 C -0.072 4.072 26 C -0.066 4.066 27 H 0.199 0.801 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.267 0.733 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.167 0.833 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 -17.728 7.054 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.162 5.162 5 C -0.442 4.442 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.240 3.760 14 O -0.468 6.468 15 C -0.172 4.172 16 C -0.129 4.129 17 C -0.105 4.105 18 C -0.082 4.082 19 C -0.329 4.329 20 S 0.331 5.669 21 C -0.252 4.252 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.092 4.092 26 C -0.074 4.074 27 H 0.216 0.784 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.185 0.815 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.993 -18.318 8.210 20.099 hybrid contribution -0.975 1.868 -1.099 2.377 sum -1.968 -16.450 7.110 18.029 Atomic orbital electron populations 1.24268 0.95368 1.06306 1.02244 1.23209 0.94377 0.95357 0.98374 1.18251 0.84239 0.97694 0.88974 1.43738 1.56185 1.08669 1.07637 1.19701 1.30110 0.81846 1.12518 0.87872 1.25267 0.95207 0.99417 0.97449 1.70097 1.19805 1.35952 1.24321 0.85992 0.79769 0.81585 0.78142 1.19240 1.20643 1.20938 1.20126 0.84035 0.87676 0.84209 1.90522 1.51006 1.79321 1.25950 1.21581 1.02434 0.94698 0.98507 1.21221 1.02757 0.91558 0.97376 1.20470 1.02495 0.95268 0.92265 1.19782 0.92715 0.98932 0.96773 1.24831 1.02380 1.05351 1.00300 1.83984 1.12141 1.56715 1.14069 1.22681 0.99053 1.04436 0.99041 1.20442 0.93697 1.00815 0.96121 1.21043 0.95503 0.97369 0.98625 1.20732 1.00247 0.99552 0.93602 1.20818 0.91796 0.97759 0.98809 1.19197 0.95497 0.99628 0.93122 0.78433 0.87338 0.91998 0.92269 0.90553 0.90213 0.91336 0.91350 0.90667 0.90717 0.81513 0.85764 0.85380 0.85416 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.35 19.25 29.55 0.57 -4.78 16 2 C -0.11 -2.45 10.88 -37.13 -0.40 -2.86 16 3 C 0.23 5.03 4.91 -6.83 -0.03 5.00 16 4 N -0.44 -11.10 2.60 -117.93 -0.31 -11.41 16 5 C -0.31 -8.66 9.33 -14.93 -0.14 -8.79 16 6 H 0.10 3.01 7.38 -52.49 -0.39 2.63 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.71 16 8 N -0.86 -22.59 9.48 55.50 0.53 -22.06 16 9 Si 0.92 20.48 29.60 -169.99 -5.03 15.44 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.45 10.79 7.56 -10.99 -0.08 10.70 16 14 O -0.58 -16.10 15.63 5.55 0.09 -16.02 16 15 C -0.13 -2.33 4.30 -27.88 -0.12 -2.45 16 16 C -0.09 -1.46 4.49 -26.74 -0.12 -1.58 16 17 C -0.07 -0.81 5.35 -27.89 -0.15 -0.96 16 18 C -0.07 -0.91 5.22 -103.67 -0.54 -1.45 16 19 C -0.20 -2.30 10.74 28.84 0.31 -1.99 16 20 S 0.07 0.75 23.23 -107.50 -2.50 -1.75 16 21 C -0.14 -1.72 6.48 -38.42 -0.25 -1.97 16 22 C -0.09 -0.94 10.07 -39.26 -0.40 -1.33 16 23 C -0.10 -1.01 10.03 -39.63 -0.40 -1.41 16 24 C -0.12 -1.26 9.95 -40.12 -0.40 -1.66 16 25 C -0.07 -0.88 9.76 -39.24 -0.38 -1.26 16 26 C -0.07 -0.88 6.01 -105.38 -0.63 -1.52 16 27 H 0.20 3.27 7.80 -54.09 -0.42 2.85 16 28 H 0.11 2.50 6.44 -51.93 -0.33 2.16 16 29 H 0.06 1.10 6.69 -51.93 -0.35 0.75 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 32 H 0.08 1.36 7.51 -51.93 -0.39 0.97 16 33 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.07 0.86 7.85 -51.93 -0.41 0.46 16 37 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.47 7.82 -52.48 -0.41 1.06 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -32.19 364.81 -10.15 -42.34 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.17 Total: 5.55 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -3.25 Total: -17.60 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.22 Total: -33.47 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.44 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.75 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.19 -10.15 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281023669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.591 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds