Wall clock time and date at job start Tue Mar 31 2020 14:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47688 * 249.88394 * 3 2 1 5 5 C 1.37104 * 120.00188 * 264.14803 * 4 3 2 6 6 H 1.08000 * 119.99430 * 197.42628 * 5 4 3 7 7 C 1.38946 * 120.00003 * 17.42042 * 5 4 3 8 8 N 1.31418 * 120.00122 * 21.54029 * 7 5 4 9 9 Si 1.86797 * 120.00121 * 201.53770 * 7 5 4 10 10 H 1.48503 * 109.46823 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46875 * 120.00103 * 9 7 5 12 12 H 1.48497 * 109.47430 * 240.00096 * 9 7 5 13 13 C 1.34771 * 119.99909 * 84.13939 * 4 3 2 14 14 O 1.21292 * 120.00077 * 180.02562 * 13 4 3 15 15 C 1.50706 * 120.00167 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47427 * 180.02562 * 15 13 4 17 17 C 1.52992 * 109.47205 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47481 * 179.97438 * 17 16 15 19 19 C 1.31825 * 122.55472 * 265.02801 * 18 17 16 20 20 S 1.75303 * 111.40259 * 179.97438 * 19 18 17 21 21 C 1.75896 * 92.19182 * 359.97438 * 20 19 18 22 22 C 1.39857 * 130.55893 * 179.97438 * 21 20 19 23 23 C 1.37471 * 120.17835 * 180.02562 * 22 21 20 24 24 C 1.38855 * 120.18635 * 0.02562 * 23 22 21 25 25 C 1.36096 * 120.58887 * 359.97438 * 24 23 22 26 26 C 1.39737 * 109.68599 * 359.75032 * 21 20 19 27 27 H 4.40641 * 5.51478 * 180.02562 * 4 1 2 28 28 H 1.09007 * 109.46822 * 129.88583 * 3 2 1 29 29 H 1.09001 * 109.47194 * 9.89053 * 3 2 1 30 30 H 0.96997 * 120.00389 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46437 * 59.99757 * 15 13 4 32 32 H 1.08999 * 109.47325 * 300.00222 * 15 13 4 33 33 H 1.08996 * 109.47072 * 60.00175 * 16 15 13 34 34 H 1.08999 * 109.47004 * 300.00363 * 16 15 13 35 35 H 1.09006 * 109.47359 * 59.99831 * 17 16 15 36 36 H 1.08999 * 109.47079 * 299.99880 * 17 16 15 37 37 H 1.08002 * 124.29877 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.91623 * 0.02562 * 22 21 20 39 39 H 1.07995 * 119.90799 * 179.97438 * 23 22 21 40 40 H 1.07995 * 119.70670 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.77110 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.4759 1.2969 5 6 3.4764 1.7935 1.4597 6 1 4.0887 2.0928 2.2974 7 6 3.0354 2.7437 0.5468 8 7 1.9840 2.4971 -0.2021 9 14 3.9369 4.3716 0.3840 10 1 5.0794 4.4016 1.3322 11 1 4.4424 4.5208 -1.0043 12 1 3.0061 5.4862 0.6943 13 6 3.2469 -0.3821 2.3301 14 8 3.6507 0.0114 3.4040 15 6 2.8712 -1.8306 2.1511 16 6 3.0904 -2.5807 3.4665 17 6 2.7096 -4.0512 3.2846 18 6 2.9260 -4.7902 4.5800 19 6 4.0362 -5.4507 4.8429 20 16 3.9758 -6.1981 6.4275 21 6 2.3602 -5.5740 6.7347 22 6 1.5255 -5.7195 7.8474 23 6 0.2832 -5.1310 7.8611 24 6 -0.1500 -4.3893 6.7700 25 6 0.6463 -4.2352 5.6772 26 6 1.9293 -4.8230 5.6379 27 1 -1.0500 -0.0002 0.0000 28 1 3.0090 0.6599 -0.7886 29 1 3.0098 -1.0116 -0.1765 30 1 1.6759 3.1605 -0.8392 31 1 3.4921 -2.2733 1.3721 32 1 1.8222 -1.9011 1.8635 33 1 2.4693 -2.1378 4.2451 34 1 4.1393 -2.5103 3.7545 35 1 3.3310 -4.4939 2.5060 36 1 1.6608 -4.1220 2.9964 37 1 4.8762 -5.5223 4.1679 38 1 1.8577 -6.2957 8.6983 39 1 -0.3579 -5.2465 8.7224 40 1 -1.1275 -3.9307 6.7888 41 1 0.2963 -3.6551 4.8360 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281023669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:28 Heat of formation + Delta-G solvation = 47.794024 kcal Electronic energy + Delta-G solvation = -23993.975522 eV Core-core repulsion = 20545.133421 eV Total energy + Delta-G solvation = -3448.842101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.103 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.72636 -40.40901 -37.49963 -36.96470 -34.56114 -33.83033 -32.99034 -31.94212 -30.56417 -28.96986 -28.02821 -26.36996 -24.27331 -23.65473 -22.93368 -20.60185 -20.32192 -19.65559 -19.07196 -18.36335 -17.83764 -16.79692 -16.63338 -16.35268 -16.29917 -16.02648 -15.89834 -15.29571 -14.89708 -14.69803 -14.61133 -14.15403 -14.04259 -13.93759 -13.60858 -13.44991 -13.16832 -12.89426 -12.79908 -12.55661 -12.50409 -12.36582 -12.14717 -11.94622 -11.82883 -11.64529 -11.51428 -11.17233 -11.05280 -10.61701 -10.52571 -10.27288 -9.80407 -9.47942 -8.60885 -8.31171 -5.90998 -0.21467 0.28280 0.60400 1.02519 1.29920 1.34671 1.42115 1.55118 1.93230 2.17535 2.34762 2.41164 2.76248 3.06138 3.24289 3.64525 3.75718 3.91386 4.00718 4.05480 4.09058 4.14851 4.37235 4.38719 4.47069 4.54124 4.62326 4.68478 4.73403 4.81252 4.89161 4.94401 4.99644 5.04545 5.09375 5.32590 5.35917 5.44206 5.45948 5.48527 5.53019 5.60680 5.94574 6.08788 6.47501 7.16768 7.18478 7.46248 8.03704 8.67385 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.002618 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.998239 B =10691.005305 C =11023.275077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.233 3.767 4 N -0.455 5.455 5 C -0.354 4.354 6 H 0.071 0.929 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.980 3.020 10 H -0.277 1.277 11 H -0.264 1.264 12 H -0.281 1.281 13 C 0.437 3.563 14 O -0.634 6.634 15 C -0.117 4.117 16 C -0.079 4.079 17 C -0.053 4.053 18 C -0.091 4.091 19 C -0.198 4.198 20 S 0.078 5.922 21 C -0.161 4.161 22 C -0.097 4.097 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.092 4.092 27 H 0.232 0.768 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.271 0.729 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.186 0.814 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -18.917 6.481 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.154 4.154 3 C 0.111 3.889 4 N -0.173 5.173 5 C -0.481 4.481 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.804 3.196 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.207 1.207 13 C 0.227 3.773 14 O -0.521 6.521 15 C -0.157 4.157 16 C -0.118 4.118 17 C -0.092 4.092 18 C -0.102 4.102 19 C -0.331 4.331 20 S 0.343 5.657 21 C -0.276 4.276 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.144 4.144 25 C -0.115 4.115 26 C -0.100 4.100 27 H 0.249 0.751 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.204 0.796 38 H 0.163 0.837 39 H 0.178 0.822 40 H 0.167 0.833 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.019 -19.529 7.600 21.053 hybrid contribution -0.737 2.251 -0.864 2.521 sum -2.756 -17.278 6.737 18.748 Atomic orbital electron populations 1.25133 0.96346 1.04656 1.00403 1.23463 0.94998 0.96919 1.00028 1.18330 0.84597 0.99238 0.86740 1.43958 1.56140 1.08084 1.09163 1.19565 1.31644 0.83949 1.12958 0.91138 1.25911 0.95454 1.02025 0.96542 1.70180 1.19814 1.36844 1.23982 0.85089 0.78269 0.77676 0.78521 1.20149 1.18836 1.20691 1.21231 0.82730 0.90026 0.83267 1.90480 1.53021 1.80749 1.27881 1.21539 1.03480 0.90390 1.00283 1.21074 1.01129 0.93894 0.95686 1.20349 1.03506 0.92390 0.92969 1.19889 0.93301 0.99921 0.97102 1.25153 1.02547 1.04648 1.00794 1.83841 1.11697 1.56402 1.13757 1.23003 0.99870 1.04997 0.99684 1.20821 0.93906 1.00946 0.96220 1.21450 0.95476 0.96110 0.99245 1.21088 1.00899 0.99156 0.93207 1.21000 0.92115 0.98558 0.99780 1.19466 0.96208 1.00523 0.93793 0.75146 0.89140 0.88004 0.91867 0.87260 0.89048 0.94151 0.93033 0.88324 0.89772 0.79644 0.83700 0.82196 0.83263 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.51 19.25 74.32 1.43 -8.08 16 2 C -0.15 -6.52 10.88 31.12 0.34 -6.18 16 3 C 0.23 9.99 4.91 84.57 0.42 10.41 16 4 N -0.46 -23.22 2.60 -645.42 -1.68 -24.90 16 5 C -0.35 -20.13 9.33 84.04 0.78 -19.35 16 6 H 0.07 4.38 7.38 -2.91 -0.02 4.35 16 7 C 0.00 0.21 4.87 84.92 0.41 0.63 16 8 N -0.87 -45.26 9.48 21.66 0.21 -45.05 16 9 Si 0.98 42.33 29.60 68.60 2.03 44.36 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.44 21.39 7.56 87.66 0.66 22.06 16 14 O -0.63 -36.69 15.63 -3.07 -0.05 -36.74 16 15 C -0.12 -4.03 4.30 29.85 0.13 -3.90 16 16 C -0.08 -2.56 4.49 30.59 0.14 -2.42 16 17 C -0.05 -1.24 5.35 29.84 0.16 -1.08 16 18 C -0.09 -2.29 5.22 -18.81 -0.10 -2.39 16 19 C -0.20 -4.50 10.74 67.03 0.72 -3.78 16 20 S 0.08 1.71 23.23 -56.49 -1.31 0.40 16 21 C -0.16 -3.94 6.48 23.02 0.15 -3.79 16 22 C -0.10 -1.92 10.07 22.48 0.23 -1.70 16 23 C -0.10 -1.78 10.03 22.24 0.22 -1.56 16 24 C -0.12 -2.43 9.95 21.92 0.22 -2.22 16 25 C -0.09 -2.31 9.76 22.49 0.22 -2.09 16 26 C -0.09 -2.44 6.01 -20.35 -0.12 -2.56 16 27 H 0.23 6.87 7.80 -4.42 -0.03 6.84 16 28 H 0.09 4.16 6.44 -2.38 -0.02 4.15 16 29 H 0.10 3.42 6.69 -2.39 -0.02 3.40 16 30 H 0.27 13.32 8.31 -92.71 -0.77 12.54 16 31 H 0.11 3.05 7.42 -2.38 -0.02 3.03 16 32 H 0.09 2.97 7.51 -2.39 -0.02 2.96 16 33 H 0.04 1.50 8.10 -2.39 -0.02 1.49 16 34 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.10 1.86 8.09 -2.38 -0.02 1.84 16 36 H 0.08 1.82 7.85 -2.39 -0.02 1.80 16 37 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.13 2.98 7.82 -2.91 -0.02 2.95 16 Total: -1.00 -72.57 364.81 6.24 -66.33 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 1.03 Total: 23.60 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 6.01 Total: -28.00 kcal Atomic # 7 Polarization: -68.47 SS G_CDS: -1.47 Total: -69.95 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.05 Total: -36.74 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Total: -72.57 6.24 -66.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281023669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.126 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds