Wall clock time and date at job start Tue Mar 31 2020 14:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47337 * 180.34132 * 3 2 1 5 5 C 1.37106 * 120.00215 * 263.93172 * 4 3 2 6 6 H 1.07997 * 119.99883 * 199.75407 * 5 4 3 7 7 C 1.38946 * 119.99825 * 19.74869 * 5 4 3 8 8 N 1.31413 * 120.00190 * 21.75081 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 201.74684 * 7 5 4 10 10 H 1.48498 * 109.46933 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47055 * 120.00275 * 9 7 5 12 12 H 1.48497 * 109.47364 * 240.00037 * 9 7 5 13 13 C 1.34774 * 120.00224 * 83.92328 * 4 3 2 14 14 O 1.21294 * 120.00515 * 180.02562 * 13 4 3 15 15 C 1.50707 * 119.99644 * 0.02562 * 13 4 3 16 16 C 1.53003 * 109.46826 * 179.97438 * 15 13 4 17 17 C 1.50702 * 109.46762 * 179.97438 * 16 15 13 18 18 N 1.30979 * 126.44180 * 90.00597 * 17 16 15 19 19 C 1.35186 * 105.57888 * 179.97438 * 18 17 16 20 20 C 1.48548 * 126.40658 * 179.97438 * 19 18 17 21 21 N 1.32510 * 119.20702 * 359.72646 * 20 19 18 22 22 C 1.32178 * 120.75249 * 179.71758 * 21 20 19 23 23 C 1.38706 * 119.18641 * 0.54527 * 22 21 20 24 24 C 1.38710 * 118.53499 * 359.73135 * 23 22 21 25 25 N 1.32174 * 119.18629 * 359.97438 * 24 23 22 26 26 N 1.30686 * 107.18971 * 359.97438 * 19 18 17 27 27 O 1.21290 * 110.11292 * 359.97438 * 26 19 18 28 28 H 4.40639 * 5.51338 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.47291 * 60.34006 * 3 2 1 30 30 H 1.09004 * 109.47536 * 300.34345 * 3 2 1 31 31 H 0.96999 * 120.00592 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47164 * 59.99875 * 15 13 4 33 33 H 1.09001 * 109.46913 * 299.99325 * 15 13 4 34 34 H 1.08996 * 109.47139 * 60.00120 * 16 15 13 35 35 H 1.08993 * 109.47283 * 299.99578 * 16 15 13 36 36 H 1.08006 * 120.40778 * 180.29349 * 22 21 20 37 37 H 1.07995 * 120.73515 * 179.74704 * 23 22 21 38 38 H 1.08007 * 120.40407 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3820 0.0082 5 6 3.4804 1.9937 -1.1688 6 1 4.1232 2.8615 -1.1576 7 6 3.0047 1.4971 -2.3762 8 7 1.9240 0.7498 -2.3992 9 14 3.9011 1.8919 -3.9667 10 1 5.0805 2.7447 -3.6716 11 1 4.3511 0.6302 -4.6076 12 1 2.9848 2.6143 -4.8853 13 6 3.2417 2.0517 1.1728 14 8 3.6451 3.1956 1.1797 15 6 2.8610 1.3792 2.4667 16 6 3.0765 2.3507 3.6290 17 6 2.6953 1.6784 4.9227 18 7 3.4864 0.9816 5.7000 19 6 2.7156 0.5784 6.7348 20 6 3.1524 -0.2459 7.8908 21 7 4.4115 -0.6539 7.9549 22 6 4.8344 -1.3840 8.9724 23 6 3.9397 -1.7312 9.9738 24 6 2.6280 -1.2918 9.8720 25 7 2.2725 -0.5596 8.8306 26 7 1.5142 1.0494 6.5280 27 8 1.4868 1.6827 5.4940 28 1 -1.0501 -0.0004 0.0002 29 1 3.0096 -0.5077 -0.8930 30 1 3.0097 -0.5183 0.8869 31 1 1.5920 0.4028 -3.2420 32 1 3.4814 0.4951 2.6129 33 1 1.8122 1.0850 2.4284 34 1 2.4563 3.2351 3.4830 35 1 4.1253 2.6446 3.6672 36 1 5.8630 -1.7096 9.0214 37 1 4.2573 -2.3303 10.8144 38 1 1.9060 -1.5449 10.6344 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281558308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:26 Heat of formation + Delta-G solvation = 161.692530 kcal Electronic energy + Delta-G solvation = -25852.547584 eV Core-core repulsion = 21894.644030 eV Total energy + Delta-G solvation = -3957.903555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.66013 -41.37947 -38.80729 -36.11253 -35.39159 -34.40401 -34.18471 -32.50673 -32.08756 -31.25449 -30.75838 -26.67418 -26.15416 -25.94022 -25.01566 -23.96735 -23.26402 -21.58537 -19.08536 -18.48158 -18.11941 -17.86292 -17.76278 -16.95873 -16.66313 -16.18554 -15.94019 -15.32408 -15.10416 -14.77981 -14.49294 -14.19544 -14.03744 -13.86748 -13.42134 -12.83686 -12.62331 -12.31574 -12.07318 -12.04650 -11.77815 -11.61142 -11.45188 -11.34389 -11.13329 -11.03998 -10.87784 -10.51215 -10.47099 -10.31747 -9.68970 -9.63613 -9.38819 -9.28213 -8.93858 -8.50163 -7.89353 -6.35843 -3.90038 0.01902 0.63825 1.17901 2.13899 2.62352 2.79012 3.12186 3.25349 3.31684 3.36006 3.42871 3.63268 3.87288 4.02346 4.08873 4.10935 4.18540 4.32993 4.56679 4.58578 4.79430 4.97368 5.01712 5.19842 5.26241 5.34772 5.43483 5.46984 5.71746 5.77589 5.85719 5.90590 6.13258 6.23545 6.31775 6.49210 6.68076 7.00045 7.52082 7.54225 8.01057 8.04562 8.37455 8.79267 9.08884 9.31144 9.84255 10.64662 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.002377 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.199727 B =11777.757940 C =11923.163618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.117 4.117 3 C 0.231 3.769 4 N -0.436 5.436 5 C -0.316 4.316 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.859 5.859 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.454 3.546 14 O -0.582 6.582 15 C -0.132 4.132 16 C -0.010 4.010 17 C 0.200 3.800 18 N -0.448 5.448 19 C 0.211 3.789 20 C 0.403 3.597 21 N -0.477 5.477 22 C 0.152 3.848 23 C -0.219 4.219 24 C 0.151 3.849 25 N -0.491 5.491 26 N -0.339 5.339 27 O 0.094 5.906 28 H 0.199 0.801 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.268 0.732 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.179 0.821 37 H 0.155 0.845 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -7.580 20.471 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.119 4.119 3 C 0.108 3.892 4 N -0.154 5.154 5 C -0.443 4.443 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.243 3.757 14 O -0.467 6.467 15 C -0.173 4.173 16 C -0.049 4.049 17 C -0.021 4.021 18 N -0.180 5.180 19 C -0.061 4.061 20 C 0.135 3.865 21 N -0.192 5.192 22 C -0.014 4.014 23 C -0.242 4.242 24 C -0.015 4.015 25 N -0.206 5.206 26 N -0.042 5.042 27 O 0.028 5.972 28 H 0.216 0.784 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.196 0.804 37 H 0.173 0.827 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.473 -6.909 20.225 21.423 hybrid contribution 0.155 -0.577 -0.285 0.662 sum 1.627 -7.486 19.941 21.362 Atomic orbital electron populations 1.24285 0.95377 1.01762 1.06002 1.23117 0.94315 0.98649 0.95793 1.18236 0.84376 0.85086 1.01547 1.43670 1.55638 1.10221 1.05883 1.19682 1.28391 1.14587 0.81683 0.87697 1.25317 0.94967 0.97420 0.99545 1.70097 1.17859 1.34348 1.27285 0.85976 0.79783 0.78271 0.81358 1.19140 1.20637 1.20905 1.19730 0.84676 0.86646 0.84669 1.90542 1.51390 1.17969 1.86799 1.21591 1.03680 0.98966 0.93076 1.20101 1.05442 0.97572 0.81790 1.29247 0.79688 0.94870 0.98253 1.72128 1.29936 1.13431 1.02542 1.22509 0.86536 1.01657 0.95360 1.18929 0.85675 0.92337 0.89547 1.68289 1.15712 1.10475 1.24722 1.23388 1.00822 0.89863 0.87355 1.23131 0.96024 1.02892 1.02143 1.23310 0.95029 0.89516 0.93646 1.68237 1.37200 1.12931 1.02267 1.75009 1.20061 1.08959 1.00169 1.85377 1.34460 1.51890 1.25518 0.78373 0.87529 0.91830 0.92157 0.89435 0.89306 0.86969 0.86146 0.80434 0.82681 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.16 19.25 29.55 0.57 -4.60 16 2 C -0.12 -2.54 10.75 -37.12 -0.40 -2.94 16 3 C 0.23 4.90 4.91 -6.83 -0.03 4.86 16 4 N -0.44 -10.48 2.60 -117.93 -0.31 -10.78 16 5 C -0.32 -8.37 9.28 -14.93 -0.14 -8.50 16 6 H 0.11 2.92 7.42 -52.49 -0.39 2.53 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.73 16 8 N -0.86 -22.03 9.59 55.50 0.53 -21.49 16 9 Si 0.92 19.96 29.60 -169.99 -5.03 14.93 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.45 10.18 7.56 -10.98 -0.08 10.10 16 14 O -0.58 -14.74 15.65 5.54 0.09 -14.66 16 15 C -0.13 -2.22 4.29 -27.88 -0.12 -2.34 16 16 C -0.01 -0.14 5.13 -27.88 -0.14 -0.29 16 17 C 0.20 2.97 7.75 -12.99 -0.10 2.87 16 18 N -0.45 -7.26 11.55 -9.90 -0.11 -7.38 16 19 C 0.21 3.40 7.99 -156.15 -1.25 2.15 16 20 C 0.40 5.76 7.60 -156.98 -1.19 4.57 16 21 N -0.48 -6.10 10.34 -11.10 -0.11 -6.22 16 22 C 0.15 1.20 11.30 -17.23 -0.19 1.00 16 23 C -0.22 -1.24 10.17 -39.23 -0.40 -1.64 16 24 C 0.15 1.16 11.30 -17.23 -0.19 0.97 16 25 N -0.49 -6.16 10.33 -11.10 -0.11 -6.28 16 26 N -0.34 -5.47 12.16 30.95 0.38 -5.10 16 27 O 0.09 1.43 11.29 18.03 0.20 1.63 16 28 H 0.20 3.29 7.80 -54.08 -0.42 2.87 16 29 H 0.11 2.39 6.60 -51.93 -0.34 2.05 16 30 H 0.06 1.12 6.70 -51.93 -0.35 0.77 16 31 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.09 1.35 7.42 -51.93 -0.39 0.97 16 33 H 0.09 1.47 7.49 -51.93 -0.39 1.08 16 34 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 35 H 0.12 1.76 8.10 -51.93 -0.42 1.34 16 36 H 0.18 0.74 8.06 -52.48 -0.42 0.31 16 37 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.18 0.68 8.06 -52.48 -0.42 0.26 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -34.00 348.67 -6.51 -40.51 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -3.52 Total: 2.62 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.76 Total: 6.95 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.26 Total: -57.25 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.29 Total: -13.02 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.00 -6.51 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281558308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.204 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds