Wall clock time and date at job start Tue Mar 31 2020 14:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47337 * 180.34132 * 3 2 1 5 5 C 1.37106 * 120.00215 * 263.93172 * 4 3 2 6 6 H 1.07997 * 119.99883 * 199.75407 * 5 4 3 7 7 C 1.38946 * 119.99825 * 19.74869 * 5 4 3 8 8 N 1.31413 * 120.00190 * 21.75081 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 201.74684 * 7 5 4 10 10 H 1.48498 * 109.46933 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47055 * 120.00275 * 9 7 5 12 12 H 1.48497 * 109.47364 * 240.00037 * 9 7 5 13 13 C 1.34774 * 120.00224 * 83.92328 * 4 3 2 14 14 O 1.21294 * 120.00515 * 180.02562 * 13 4 3 15 15 C 1.50707 * 119.99644 * 0.02562 * 13 4 3 16 16 C 1.53003 * 109.46826 * 179.97438 * 15 13 4 17 17 C 1.50702 * 109.46762 * 179.97438 * 16 15 13 18 18 N 1.30979 * 126.44180 * 90.00597 * 17 16 15 19 19 C 1.35186 * 105.57888 * 179.97438 * 18 17 16 20 20 C 1.48548 * 126.40658 * 179.97438 * 19 18 17 21 21 N 1.32510 * 119.20702 * 359.72646 * 20 19 18 22 22 C 1.32178 * 120.75249 * 179.71758 * 21 20 19 23 23 C 1.38706 * 119.18641 * 0.54527 * 22 21 20 24 24 C 1.38710 * 118.53499 * 359.73135 * 23 22 21 25 25 N 1.32174 * 119.18629 * 359.97438 * 24 23 22 26 26 N 1.30686 * 107.18971 * 359.97438 * 19 18 17 27 27 O 1.21290 * 110.11292 * 359.97438 * 26 19 18 28 28 H 4.40639 * 5.51338 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.47291 * 60.34006 * 3 2 1 30 30 H 1.09004 * 109.47536 * 300.34345 * 3 2 1 31 31 H 0.96999 * 120.00592 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47164 * 59.99875 * 15 13 4 33 33 H 1.09001 * 109.46913 * 299.99325 * 15 13 4 34 34 H 1.08996 * 109.47139 * 60.00120 * 16 15 13 35 35 H 1.08993 * 109.47283 * 299.99578 * 16 15 13 36 36 H 1.08006 * 120.40778 * 180.29349 * 22 21 20 37 37 H 1.07995 * 120.73515 * 179.74704 * 23 22 21 38 38 H 1.08007 * 120.40407 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3820 0.0082 5 6 3.4804 1.9937 -1.1688 6 1 4.1232 2.8615 -1.1576 7 6 3.0047 1.4971 -2.3762 8 7 1.9240 0.7498 -2.3992 9 14 3.9011 1.8919 -3.9667 10 1 5.0805 2.7447 -3.6716 11 1 4.3511 0.6302 -4.6076 12 1 2.9848 2.6143 -4.8853 13 6 3.2417 2.0517 1.1728 14 8 3.6451 3.1956 1.1797 15 6 2.8610 1.3792 2.4667 16 6 3.0765 2.3507 3.6290 17 6 2.6953 1.6784 4.9227 18 7 3.4864 0.9816 5.7000 19 6 2.7156 0.5784 6.7348 20 6 3.1524 -0.2459 7.8908 21 7 4.4115 -0.6539 7.9549 22 6 4.8344 -1.3840 8.9724 23 6 3.9397 -1.7312 9.9738 24 6 2.6280 -1.2918 9.8720 25 7 2.2725 -0.5596 8.8306 26 7 1.5142 1.0494 6.5280 27 8 1.4868 1.6827 5.4940 28 1 -1.0501 -0.0004 0.0002 29 1 3.0096 -0.5077 -0.8930 30 1 3.0097 -0.5183 0.8869 31 1 1.5920 0.4028 -3.2420 32 1 3.4814 0.4951 2.6129 33 1 1.8122 1.0850 2.4284 34 1 2.4563 3.2351 3.4830 35 1 4.1253 2.6446 3.6672 36 1 5.8630 -1.7096 9.0214 37 1 4.2573 -2.3303 10.8144 38 1 1.9060 -1.5449 10.6344 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281558308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:25 Heat of formation + Delta-G solvation = 137.997380 kcal Electronic energy + Delta-G solvation = -25853.575083 eV Core-core repulsion = 21894.644030 eV Total energy + Delta-G solvation = -3958.931053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.112 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.83316 -42.07582 -40.56868 -37.34523 -37.07016 -35.64008 -34.95967 -34.02496 -33.20429 -32.99357 -32.00244 -28.38742 -27.47068 -27.06349 -25.94903 -25.34188 -24.35874 -22.67062 -20.74506 -19.65689 -19.49999 -19.24205 -18.56547 -18.38213 -17.97998 -17.71125 -16.66445 -16.55986 -16.41349 -16.10606 -15.94066 -15.46409 -15.27671 -14.86223 -14.52988 -14.39942 -14.01389 -13.98400 -13.53940 -13.45240 -13.39153 -13.05635 -12.76120 -12.46515 -12.34026 -12.16620 -12.11266 -12.09122 -12.09060 -11.51877 -11.13581 -11.06006 -10.63373 -10.46334 -10.41156 -10.29940 -9.78428 -8.28099 -5.89507 -0.78552 0.03939 0.07321 1.08415 1.38000 1.46329 1.54997 1.59807 1.76268 1.92105 2.17129 2.35930 2.41143 2.46219 2.68948 3.08125 3.11145 3.33483 3.49989 3.65066 3.77301 3.88280 3.90586 4.06564 4.07918 4.09130 4.31826 4.41057 4.51514 4.60929 4.74726 4.77643 4.88543 4.96387 4.99512 5.24989 5.44794 5.52562 5.87589 6.10232 6.46347 6.75813 6.94039 7.17099 7.18443 7.45348 8.00316 8.70338 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.002377 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.199727 B =11777.757940 C =11923.163618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.155 4.155 3 C 0.233 3.767 4 N -0.451 5.451 5 C -0.348 4.348 6 H 0.079 0.921 7 C 0.003 3.997 8 N -0.871 5.871 9 Si 0.981 3.019 10 H -0.272 1.272 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.449 3.551 14 O -0.619 6.619 15 C -0.117 4.117 16 C 0.001 3.999 17 C 0.208 3.792 18 N -0.464 5.464 19 C 0.207 3.793 20 C 0.364 3.636 21 N -0.509 5.509 22 C 0.138 3.862 23 C -0.183 4.183 24 C 0.138 3.862 25 N -0.520 5.520 26 N -0.356 5.356 27 O 0.094 5.906 28 H 0.231 0.769 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.270 0.730 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.214 0.786 37 H 0.207 0.793 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -9.469 22.409 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.169 5.169 5 C -0.475 4.475 6 H 0.097 0.903 7 C -0.201 4.201 8 N -0.508 5.508 9 Si 0.805 3.195 10 H -0.197 1.197 11 H -0.193 1.193 12 H -0.209 1.209 13 C 0.239 3.761 14 O -0.506 6.506 15 C -0.158 4.158 16 C -0.038 4.038 17 C -0.013 4.013 18 N -0.197 5.197 19 C -0.065 4.065 20 C 0.096 3.904 21 N -0.225 5.225 22 C -0.027 4.027 23 C -0.204 4.204 24 C -0.027 4.027 25 N -0.236 5.236 26 N -0.060 5.060 27 O 0.028 5.972 28 H 0.247 0.753 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.230 0.770 37 H 0.224 0.776 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.581 -8.825 22.175 23.919 hybrid contribution 0.127 -0.072 -0.716 0.731 sum 1.708 -8.898 21.458 23.293 Atomic orbital electron populations 1.25119 0.96345 1.00188 1.04575 1.23414 0.94969 1.00078 0.97150 1.18285 0.84587 0.83718 1.02350 1.43864 1.55975 1.11365 1.05713 1.19579 1.29430 1.15018 0.83523 0.90347 1.25958 0.95297 0.97138 1.01715 1.70183 1.18196 1.34452 1.27963 0.85073 0.78348 0.78300 0.77758 1.19692 1.19310 1.20908 1.20562 0.83186 0.86379 0.85923 1.90510 1.52686 1.19746 1.87627 1.21446 1.04266 0.99406 0.90664 1.19966 1.05718 0.97182 0.80969 1.29099 0.79646 0.94516 0.98010 1.72116 1.30475 1.13988 1.03082 1.23031 0.86241 1.01334 0.95866 1.18796 0.86836 0.94540 0.90222 1.68217 1.15308 1.11884 1.27076 1.24141 1.02834 0.88985 0.86762 1.23661 0.94379 1.00385 1.02016 1.24098 0.97045 0.88527 0.93001 1.68182 1.37737 1.14339 1.03357 1.74975 1.20551 1.09884 1.00637 1.85351 1.34383 1.51945 1.25483 0.75281 0.89246 0.88407 0.91963 0.87655 0.88492 0.86331 0.86041 0.76998 0.77615 0.76912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.50 19.25 74.32 1.43 -8.07 16 2 C -0.15 -6.61 10.75 31.12 0.33 -6.28 16 3 C 0.23 9.89 4.91 84.57 0.42 10.30 16 4 N -0.45 -22.06 2.60 -645.40 -1.68 -23.73 16 5 C -0.35 -18.93 9.28 84.04 0.78 -18.15 16 6 H 0.08 4.58 7.42 -2.91 -0.02 4.56 16 7 C 0.00 0.13 4.83 84.93 0.41 0.54 16 8 N -0.87 -44.71 9.59 21.66 0.21 -44.50 16 9 Si 0.98 41.35 29.60 68.60 2.03 43.38 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.45 20.44 7.56 87.66 0.66 21.11 16 14 O -0.62 -32.22 15.65 -3.07 -0.05 -32.27 16 15 C -0.12 -3.89 4.29 29.85 0.13 -3.76 16 16 C 0.00 0.02 5.13 29.85 0.15 0.18 16 17 C 0.21 6.20 7.75 88.36 0.68 6.89 16 18 N -0.46 -15.21 11.55 -302.62 -3.50 -18.70 16 19 C 0.21 6.80 7.99 137.37 1.10 7.90 16 20 C 0.36 10.42 7.60 137.66 1.05 11.46 16 21 N -0.51 -12.67 10.34 -189.04 -1.95 -14.62 16 22 C 0.14 1.80 11.30 84.75 0.96 2.75 16 23 C -0.18 -1.32 10.17 22.49 0.23 -1.10 16 24 C 0.14 1.74 11.30 84.75 0.96 2.69 16 25 N -0.52 -12.66 10.33 -189.04 -1.95 -14.61 16 26 N -0.36 -11.72 12.16 -59.26 -0.72 -12.44 16 27 O 0.09 2.86 11.29 74.58 0.84 3.71 16 28 H 0.23 7.02 7.80 -4.41 -0.03 6.99 16 29 H 0.09 4.06 6.60 -2.38 -0.02 4.04 16 30 H 0.10 3.35 6.70 -2.39 -0.02 3.34 16 31 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 32 H 0.11 3.15 7.42 -2.39 -0.02 3.13 16 33 H 0.10 3.12 7.49 -2.39 -0.02 3.10 16 34 H 0.12 3.33 8.10 -2.39 -0.02 3.31 16 35 H 0.12 3.58 8.10 -2.39 -0.02 3.56 16 36 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.21 -0.64 8.06 -2.91 -0.02 -0.66 16 38 H 0.21 0.83 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -77.47 348.67 3.64 -73.83 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.12 Total: 13.50 kcal Atomic # 6 Polarization: 17.18 SS G_CDS: 9.29 Total: 26.47 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -9.59 Total: -128.61 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: 0.79 Total: -28.56 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -77.47 3.64 -73.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281558308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.824 kcal (2) G-P(sol) polarization free energy of solvation -77.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds