Wall clock time and date at job start Tue Mar 31 2020 14:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00316 * 2 1 4 4 C 1.50695 * 109.47600 * 270.00130 * 3 2 1 5 5 H 1.08004 * 119.99839 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00384 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99914 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47465 * 90.00141 * 8 6 4 10 10 H 1.48509 * 109.47156 * 210.00082 * 8 6 4 11 11 H 1.48502 * 109.47164 * 329.99902 * 8 6 4 12 12 C 1.34779 * 120.00036 * 180.02562 * 2 1 3 13 13 O 1.21278 * 120.00483 * 184.48254 * 12 2 1 14 14 C 1.50702 * 119.99914 * 4.47792 * 12 2 1 15 15 C 1.52995 * 109.47624 * 285.11626 * 14 12 2 16 16 O 1.42902 * 109.46993 * 45.11673 * 14 12 2 17 17 C 1.53001 * 109.47339 * 165.11456 * 14 12 2 18 18 S 1.81401 * 109.47333 * 175.00274 * 17 14 12 19 19 C 1.76198 * 102.99996 * 180.02562 * 18 17 14 20 20 C 1.39014 * 120.06553 * 359.72218 * 19 18 17 21 21 C 1.38075 * 119.96708 * 180.23422 * 20 19 18 22 22 C 1.38280 * 120.10676 * 0.06302 * 21 20 19 23 23 C 1.38510 * 120.13489 * 359.96267 * 22 21 20 24 24 F 1.35106 * 119.98879 * 180.02562 * 23 22 21 25 25 C 1.38329 * 120.02886 * 359.97438 * 23 22 21 26 26 H 1.08997 * 109.46790 * 275.45146 * 1 2 3 27 27 H 1.09002 * 109.46984 * 35.45097 * 1 2 3 28 28 H 1.08996 * 109.46994 * 155.44735 * 1 2 3 29 29 H 1.08999 * 109.47125 * 30.00733 * 3 2 1 30 30 H 1.09006 * 109.47218 * 150.00122 * 3 2 1 31 31 H 0.96990 * 120.00301 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.47243 * 300.00219 * 15 14 12 33 33 H 1.09006 * 109.47044 * 59.99622 * 15 14 12 34 34 H 1.08997 * 109.47358 * 179.97438 * 15 14 12 35 35 H 0.96693 * 114.00233 * 59.99611 * 16 14 12 36 36 H 1.08996 * 109.46809 * 54.99796 * 17 14 12 37 37 H 1.09010 * 109.46839 * 295.00410 * 17 14 12 38 38 H 1.07995 * 120.01486 * 0.25457 * 20 19 18 39 39 H 1.08002 * 119.94476 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.93420 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.05155 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2417 6 6 3.1262 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4369 3.4176 -3.4337 9 1 2.3066 4.2603 -3.9000 10 1 4.6970 4.2009 -3.4965 11 1 3.5542 2.2207 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3489 -1.1690 0.0816 14 6 1.3888 -2.4703 -0.1030 15 6 0.7155 -2.7780 1.2359 16 8 0.3942 -2.3683 -1.1240 17 6 2.3655 -3.5948 -0.4530 18 16 1.4909 -5.1839 -0.4314 19 6 2.7550 -6.3378 -0.8497 20 6 4.0480 -5.8936 -1.1014 21 6 5.0360 -6.7991 -1.4337 22 6 4.7412 -8.1474 -1.5181 23 6 3.4542 -8.5948 -1.2687 24 9 3.1696 -9.9129 -1.3514 25 6 2.4604 -7.6927 -0.9340 26 1 -0.3633 0.0976 1.0230 27 1 -0.3633 0.8372 -0.5961 28 1 -0.3633 -0.9347 -0.4270 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 4.0295 4.4443 -0.8502 32 1 1.4742 -2.8557 2.0148 33 1 0.0197 -1.9768 1.4853 34 1 0.1727 -3.7202 1.1616 35 1 0.7501 -2.1741 -2.0018 36 1 3.1736 -3.6148 0.2782 37 1 2.7788 -3.4210 -1.4466 38 1 4.2797 -4.8407 -1.0366 39 1 6.0405 -6.4535 -1.6288 40 1 5.5160 -8.8533 -1.7787 41 1 1.4570 -8.0411 -0.7391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285240301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:52 Heat of formation + Delta-G solvation = -94.556472 kcal Electronic energy + Delta-G solvation = -25173.743594 eV Core-core repulsion = 21287.959487 eV Total energy + Delta-G solvation = -3885.784107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.17090 -40.00114 -39.02768 -36.81699 -35.03567 -32.63096 -32.26151 -31.48233 -30.84371 -28.20613 -27.35811 -25.99255 -23.95661 -23.45291 -22.87054 -21.55971 -19.25639 -18.57471 -17.50963 -16.68437 -16.59896 -16.53787 -15.95789 -15.87623 -15.63358 -15.43807 -15.21545 -14.53975 -14.31622 -14.18606 -13.77215 -13.57605 -13.29725 -13.10001 -12.61826 -12.54725 -12.40103 -12.33161 -12.04217 -11.99129 -11.91537 -11.61940 -11.46183 -11.26996 -11.02554 -10.67787 -10.43018 -10.26808 -10.17059 -10.04627 -9.68910 -9.12817 -8.82425 -8.51132 -7.72615 -7.61549 -6.11992 -4.17627 0.75104 0.87798 1.18380 2.15791 3.06843 3.21446 3.24639 3.31481 3.34624 3.74116 3.98953 4.07826 4.36369 4.44936 4.46120 4.67244 4.68721 4.78107 4.90948 5.04741 5.22577 5.25673 5.33287 5.49650 5.66937 5.67288 5.69835 5.74751 5.85553 5.95949 6.00908 6.01122 6.08999 6.46476 6.52037 6.93589 7.32646 7.37250 7.46374 7.83398 8.13903 8.28631 8.74794 8.91415 9.47618 10.96164 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002826 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.345052 B = 9906.496424 C =10817.129226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.583 5.583 3 C 0.241 3.759 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.485 3.515 13 O -0.540 6.540 14 C 0.137 3.863 15 C -0.145 4.145 16 O -0.534 6.534 17 C -0.125 4.125 18 S -0.069 6.069 19 C -0.063 4.063 20 C -0.145 4.145 21 C -0.068 4.068 22 C -0.165 4.165 23 C 0.115 3.885 24 F -0.139 7.139 25 C -0.140 4.140 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.385 0.615 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -20.557 0.624 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.313 5.313 3 C 0.122 3.878 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.268 3.732 13 O -0.418 6.418 14 C 0.091 3.909 15 C -0.202 4.202 16 O -0.342 6.342 17 C -0.274 4.274 18 S 0.177 5.823 19 C -0.176 4.176 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.186 4.186 23 C 0.094 3.906 24 F -0.117 7.117 25 C -0.165 4.165 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.235 0.765 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.829 -20.589 1.482 21.199 hybrid contribution 1.936 0.630 -1.764 2.693 sum -2.893 -19.959 -0.282 20.170 Atomic orbital electron populations 1.22406 0.80671 1.05584 1.00794 1.48081 1.06829 1.07189 1.69209 1.19362 0.92652 0.78125 0.97647 1.21383 1.36751 1.06505 0.92081 0.92473 1.24945 0.95300 0.96342 0.97513 1.69927 1.38195 1.14280 1.30798 0.86482 0.77753 0.78636 0.84451 1.20557 1.21048 1.19908 1.20665 0.87998 0.85547 0.78990 1.90684 1.13813 1.86990 1.50346 1.21111 0.87628 0.91110 0.91006 1.21922 1.01744 1.03542 0.93006 1.86435 1.34300 1.93157 1.20279 1.24336 1.02059 0.93634 1.07329 1.85584 1.13046 0.98114 1.85521 1.21815 0.97602 0.96698 1.01479 1.21400 0.91991 1.00955 1.02546 1.20963 0.99556 0.91867 0.96415 1.21151 0.95374 0.97143 1.04976 1.17517 0.93995 0.77576 1.01504 1.91509 1.94253 1.32119 1.93833 1.20629 0.99791 0.91177 1.04916 0.94261 0.91478 0.87442 0.94863 0.93797 0.92617 0.90318 0.90376 0.90207 0.76489 0.87039 0.88420 0.84731 0.84542 0.84611 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.77 9.02 59.85 0.54 1.31 16 2 N -0.58 -11.82 2.86 -182.96 -0.52 -12.35 16 3 C 0.24 6.16 5.22 -5.20 -0.03 6.14 16 4 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.49 9.28 6.63 -10.98 -0.07 9.21 16 13 O -0.54 -12.45 15.44 5.56 0.09 -12.37 16 14 C 0.14 1.89 0.64 -91.77 -0.06 1.83 16 15 C -0.14 -1.74 8.31 37.16 0.31 -1.43 16 16 O -0.53 -6.67 9.55 -35.23 -0.34 -7.01 16 17 C -0.12 -1.57 3.07 37.16 0.11 -1.46 16 18 S -0.07 -0.78 19.96 -107.50 -2.15 -2.92 16 19 C -0.06 -0.70 6.11 -39.05 -0.24 -0.94 16 20 C -0.14 -1.55 9.36 -39.35 -0.37 -1.92 16 21 C -0.07 -0.63 10.04 -39.63 -0.40 -1.02 16 22 C -0.16 -1.50 10.02 -39.47 -0.40 -1.90 16 23 C 0.12 1.19 7.30 -39.45 -0.29 0.91 16 24 F -0.14 -1.48 17.27 2.25 0.04 -1.45 16 25 C -0.14 -1.48 9.77 -39.30 -0.38 -1.87 16 26 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 27 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 28 H 0.11 1.50 4.10 -45.56 -0.19 1.31 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.04 1.26 7.37 -51.93 -0.38 0.88 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.08 0.92 6.22 -51.93 -0.32 0.60 16 34 H 0.08 0.86 6.72 -51.93 -0.35 0.51 16 35 H 0.39 4.21 9.04 52.38 0.47 4.68 16 36 H 0.11 1.48 7.37 -51.93 -0.38 1.10 16 37 H 0.10 1.23 7.74 -51.92 -0.40 0.83 16 38 H 0.13 1.44 5.88 -52.49 -0.31 1.13 16 39 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -31.87 356.36 -7.82 -39.69 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.34 Total: 4.47 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.69 Total: -4.36 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.21 Total: -37.72 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.25 Total: -19.38 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.15 Total: -2.92 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.87 -7.82 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285240301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.862 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds