Wall clock time and date at job start Tue Mar 31 2020 14:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46495 * 120.00316 * 2 1 4 4 C 1.50695 * 109.47600 * 270.00130 * 3 2 1 5 5 H 1.08004 * 119.99839 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00384 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99914 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47465 * 90.00141 * 8 6 4 10 10 H 1.48509 * 109.47156 * 210.00082 * 8 6 4 11 11 H 1.48502 * 109.47164 * 329.99902 * 8 6 4 12 12 C 1.34779 * 120.00036 * 180.02562 * 2 1 3 13 13 O 1.21278 * 120.00483 * 184.48254 * 12 2 1 14 14 C 1.50702 * 119.99914 * 4.47792 * 12 2 1 15 15 C 1.52995 * 109.47624 * 285.11626 * 14 12 2 16 16 O 1.42902 * 109.46993 * 45.11673 * 14 12 2 17 17 C 1.53001 * 109.47339 * 165.11456 * 14 12 2 18 18 S 1.81401 * 109.47333 * 175.00274 * 17 14 12 19 19 C 1.76198 * 102.99996 * 180.02562 * 18 17 14 20 20 C 1.39014 * 120.06553 * 359.72218 * 19 18 17 21 21 C 1.38075 * 119.96708 * 180.23422 * 20 19 18 22 22 C 1.38280 * 120.10676 * 0.06302 * 21 20 19 23 23 C 1.38510 * 120.13489 * 359.96267 * 22 21 20 24 24 F 1.35106 * 119.98879 * 180.02562 * 23 22 21 25 25 C 1.38329 * 120.02886 * 359.97438 * 23 22 21 26 26 H 1.08997 * 109.46790 * 275.45146 * 1 2 3 27 27 H 1.09002 * 109.46984 * 35.45097 * 1 2 3 28 28 H 1.08996 * 109.46994 * 155.44735 * 1 2 3 29 29 H 1.08999 * 109.47125 * 30.00733 * 3 2 1 30 30 H 1.09006 * 109.47218 * 150.00122 * 3 2 1 31 31 H 0.96990 * 120.00301 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.47243 * 300.00219 * 15 14 12 33 33 H 1.09006 * 109.47044 * 59.99622 * 15 14 12 34 34 H 1.08997 * 109.47358 * 179.97438 * 15 14 12 35 35 H 0.96693 * 114.00233 * 59.99611 * 16 14 12 36 36 H 1.08996 * 109.46809 * 54.99796 * 17 14 12 37 37 H 1.09010 * 109.46839 * 295.00410 * 17 14 12 38 38 H 1.07995 * 120.01486 * 0.25457 * 20 19 18 39 39 H 1.08002 * 119.94476 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.93420 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.05155 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4488 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2417 6 6 3.1262 2.8780 -1.6726 7 7 3.5526 3.6185 -0.6730 8 14 3.4369 3.4176 -3.4337 9 1 2.3066 4.2603 -3.9000 10 1 4.6970 4.2009 -3.4965 11 1 3.5542 2.2207 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3489 -1.1690 0.0816 14 6 1.3888 -2.4703 -0.1030 15 6 0.7155 -2.7780 1.2359 16 8 0.3942 -2.3683 -1.1240 17 6 2.3655 -3.5948 -0.4530 18 16 1.4909 -5.1839 -0.4314 19 6 2.7550 -6.3378 -0.8497 20 6 4.0480 -5.8936 -1.1014 21 6 5.0360 -6.7991 -1.4337 22 6 4.7412 -8.1474 -1.5181 23 6 3.4542 -8.5948 -1.2687 24 9 3.1696 -9.9129 -1.3514 25 6 2.4604 -7.6927 -0.9340 26 1 -0.3633 0.0976 1.0230 27 1 -0.3633 0.8372 -0.5961 28 1 -0.3633 -0.9347 -0.4270 29 1 1.6086 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 4.0295 4.4443 -0.8502 32 1 1.4742 -2.8557 2.0148 33 1 0.0197 -1.9768 1.4853 34 1 0.1727 -3.7202 1.1616 35 1 0.7501 -2.1741 -2.0018 36 1 3.1736 -3.6148 0.2782 37 1 2.7788 -3.4210 -1.4466 38 1 4.2797 -4.8407 -1.0366 39 1 6.0405 -6.4535 -1.6288 40 1 5.5160 -8.8533 -1.7787 41 1 1.4570 -8.0411 -0.7391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285240301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:51 Heat of formation + Delta-G solvation = -114.498004 kcal Electronic energy + Delta-G solvation = -25174.608323 eV Core-core repulsion = 21287.959487 eV Total energy + Delta-G solvation = -3886.648836 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97161 -41.41965 -39.79379 -38.13757 -36.74239 -34.67048 -33.35124 -32.24340 -31.65351 -29.97187 -28.53409 -27.45680 -25.71826 -24.28194 -23.73350 -22.97741 -20.58078 -19.42533 -18.82680 -18.68387 -17.56237 -17.45791 -17.20200 -16.77589 -16.67518 -16.59718 -16.47849 -16.30409 -15.76134 -15.18798 -14.85131 -14.46211 -14.39629 -14.28774 -14.05118 -13.74844 -13.57915 -13.48147 -13.44990 -13.23543 -13.07041 -12.98385 -12.84875 -12.65344 -12.49808 -12.36041 -12.23247 -11.78782 -11.54529 -11.17808 -10.83065 -10.66080 -10.31180 -9.91707 -9.44194 -8.46707 -8.24474 -6.39751 -0.03364 0.10535 0.25764 1.23835 1.36943 1.39145 1.48981 1.57994 2.24213 2.40854 2.44350 2.98854 3.05636 3.21727 3.33171 3.53952 3.63791 3.72900 3.96359 4.00931 4.27453 4.29895 4.47638 4.52601 4.59499 4.69698 4.74450 4.77691 4.92745 4.95958 4.96555 5.09857 5.10695 5.19383 5.22014 5.26484 5.53871 5.77104 5.79339 6.02149 6.35473 6.66219 6.73371 7.20760 7.36059 8.82997 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002826 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.345052 B = 9906.496424 C =10817.129226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.590 5.590 3 C 0.255 3.745 4 C -0.542 4.542 5 H 0.058 0.942 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.479 3.521 13 O -0.587 6.587 14 C 0.156 3.844 15 C -0.144 4.144 16 O -0.527 6.527 17 C -0.123 4.123 18 S -0.048 6.048 19 C -0.079 4.079 20 C -0.156 4.156 21 C -0.068 4.068 22 C -0.159 4.159 23 C 0.104 3.896 24 F -0.142 7.142 25 C -0.145 4.145 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.020 0.980 30 H 0.000 1.000 31 H 0.267 0.733 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -22.159 -0.630 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.320 5.320 3 C 0.133 3.867 4 C -0.580 4.580 5 H 0.077 0.923 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.264 3.736 13 O -0.468 6.468 14 C 0.110 3.890 15 C -0.202 4.202 16 O -0.336 6.336 17 C -0.272 4.272 18 S 0.198 5.802 19 C -0.192 4.192 20 C -0.180 4.180 21 C -0.088 4.088 22 C -0.180 4.180 23 C 0.083 3.917 24 F -0.121 7.121 25 C -0.170 4.170 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.038 0.962 30 H 0.018 0.982 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.246 0.754 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.714 -22.217 0.221 22.941 hybrid contribution 2.225 1.060 -1.344 2.807 sum -3.489 -21.157 -1.122 21.472 Atomic orbital electron populations 1.22634 0.77804 1.06629 1.02174 1.48074 1.08484 1.05971 1.69464 1.18831 0.91142 0.80366 0.96336 1.21679 1.36811 1.06736 0.92817 0.92345 1.25886 0.94911 0.96417 1.02019 1.70054 1.38910 1.14782 1.33165 0.85387 0.77932 0.78356 0.78973 1.19058 1.20819 1.19291 1.21676 0.87753 0.86879 0.77255 1.90653 1.16188 1.87873 1.52073 1.20844 0.87546 0.88101 0.92488 1.21977 1.01849 1.04637 0.91698 1.86403 1.33713 1.92835 1.20633 1.24180 1.01651 0.94579 1.06817 1.85382 1.12388 0.96602 1.85853 1.21886 0.97843 0.96926 1.02548 1.21502 0.92399 1.01115 1.03017 1.21246 1.00283 0.91704 0.95547 1.21443 0.95438 0.97537 1.03620 1.17683 0.94574 0.77446 1.01991 1.91501 1.94335 1.32304 1.93912 1.20741 1.00412 0.91009 1.04837 0.92361 0.92310 0.84893 0.96197 0.98157 0.92391 0.90291 0.89871 0.88341 0.75436 0.88075 0.88776 0.85277 0.82280 0.82281 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.50 9.02 127.77 1.15 2.66 16 2 N -0.59 -24.23 2.86 -851.15 -2.43 -26.67 16 3 C 0.25 13.53 5.22 85.63 0.45 13.97 16 4 C -0.54 -30.34 9.39 25.60 0.24 -30.10 16 5 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 8 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.48 18.54 6.63 87.66 0.58 19.12 16 13 O -0.59 -28.09 15.44 -3.02 -0.05 -28.14 16 14 C 0.16 4.13 0.64 -11.54 -0.01 4.12 16 15 C -0.14 -3.20 8.31 71.98 0.60 -2.60 16 16 O -0.53 -12.04 9.55 -148.98 -1.42 -13.46 16 17 C -0.12 -3.03 3.07 71.98 0.22 -2.81 16 18 S -0.05 -1.01 19.96 -56.49 -1.13 -2.13 16 19 C -0.08 -1.66 6.11 22.62 0.14 -1.53 16 20 C -0.16 -3.19 9.36 22.42 0.21 -2.98 16 21 C -0.07 -1.13 10.04 22.24 0.22 -0.91 16 22 C -0.16 -2.56 10.02 22.34 0.22 -2.33 16 23 C 0.10 1.99 7.30 22.36 0.16 2.15 16 24 F -0.14 -2.82 17.27 44.97 0.78 -2.05 16 25 C -0.15 -2.87 9.77 22.45 0.22 -2.65 16 26 H 0.06 1.58 7.75 -2.39 -0.02 1.56 16 27 H 0.06 1.91 8.11 -2.39 -0.02 1.89 16 28 H 0.13 3.39 4.10 1.64 0.01 3.40 16 29 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 30 H 0.00 0.02 7.37 -2.38 -0.02 0.00 16 31 H 0.27 14.98 8.31 -92.72 -0.77 14.21 16 32 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.08 1.77 6.22 -2.38 -0.01 1.76 16 34 H 0.10 1.86 6.72 -2.39 -0.02 1.84 16 35 H 0.39 7.82 9.04 -62.85 -0.57 7.26 16 36 H 0.10 2.71 7.37 -2.39 -0.02 2.69 16 37 H 0.09 2.35 7.74 -2.39 -0.02 2.33 16 38 H 0.13 2.74 5.88 -2.91 -0.02 2.72 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -70.31 356.36 3.45 -66.86 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.52 Total: 18.17 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 4.87 Total: -3.05 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.15 Total: -81.96 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.47 Total: -41.60 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -1.13 Total: -2.13 kcal Total: -70.31 3.45 -66.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285240301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.642 kcal (2) G-P(sol) polarization free energy of solvation -70.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds