Wall clock time and date at job start Tue Mar 31 2020 14:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00481 * 2 1 4 4 C 1.50696 * 109.46706 * 270.00046 * 3 2 1 5 5 H 1.07998 * 120.00581 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99973 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99921 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00389 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47306 * 90.00275 * 8 6 4 10 10 H 1.48496 * 109.47438 * 210.00407 * 8 6 4 11 11 H 1.48506 * 109.47040 * 330.00311 * 8 6 4 12 12 C 1.34778 * 119.99895 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00041 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00078 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.47150 * 85.00012 * 14 12 2 16 16 O 1.42905 * 109.47321 * 325.00355 * 14 12 2 17 17 C 1.52997 * 109.47342 * 205.00344 * 14 12 2 18 18 S 1.81406 * 109.46873 * 185.00163 * 17 14 12 19 19 C 1.76207 * 102.99534 * 179.97438 * 18 17 14 20 20 C 1.39003 * 120.07031 * 359.72298 * 19 18 17 21 21 C 1.38074 * 119.96919 * 179.76870 * 20 19 18 22 22 C 1.38283 * 120.10719 * 0.50728 * 21 20 19 23 23 C 1.38516 * 120.13382 * 359.75056 * 22 21 20 24 24 F 1.35100 * 119.98653 * 180.02562 * 23 22 21 25 25 C 1.38328 * 120.02451 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47177 * 270.00315 * 1 2 3 27 27 H 1.09001 * 109.47042 * 30.00031 * 1 2 3 28 28 H 1.08996 * 109.47263 * 150.00343 * 1 2 3 29 29 H 1.09005 * 109.46542 * 29.99350 * 3 2 1 30 30 H 1.08991 * 109.47281 * 149.99598 * 3 2 1 31 31 H 0.96996 * 120.00150 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47362 * 300.00765 * 15 14 12 33 33 H 1.09002 * 109.46716 * 60.00124 * 15 14 12 34 34 H 1.09000 * 109.47486 * 180.02562 * 15 14 12 35 35 H 0.96696 * 114.00036 * 299.99741 * 16 14 12 36 36 H 1.09000 * 109.47278 * 304.99798 * 17 14 12 37 37 H 1.08994 * 109.47510 * 65.00307 * 17 14 12 38 38 H 1.08000 * 120.01500 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.94623 * 180.23318 * 21 20 19 40 40 H 1.07992 * 119.93659 * 179.76574 * 22 21 20 41 41 H 1.08001 * 120.04882 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8777 -1.6728 7 7 3.5535 3.6179 -0.6733 8 14 3.4381 3.4166 -3.4340 9 1 2.3081 4.2590 -3.9015 10 1 4.6982 4.1999 -3.4962 11 1 3.5562 2.2192 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 1.0209 -2.8521 -1.4349 16 8 0.1916 -2.3325 0.7748 17 6 2.2627 -3.5672 0.6118 18 16 1.4148 -5.1655 0.4789 19 6 2.5579 -6.2832 1.2198 20 6 3.7693 -5.8143 1.7146 21 6 4.6614 -6.6913 2.2991 22 6 4.3564 -8.0374 2.3837 23 6 3.1528 -8.5102 1.8872 24 9 2.8576 -9.8258 1.9719 25 6 2.2525 -7.6356 1.3057 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0304 4.4437 -0.8505 32 1 0.3959 -2.0720 -1.8696 33 1 1.9314 -2.9587 -2.0246 34 1 0.4755 -3.7958 -1.4341 35 1 0.3471 -2.0920 1.6984 36 1 3.2110 -3.6135 0.0764 37 1 2.4488 -3.3409 1.6616 38 1 4.0112 -4.7641 1.6450 39 1 5.6009 -6.3260 2.6868 40 1 5.0578 -8.7214 2.8380 41 1 1.3138 -8.0038 0.9188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285240305.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:54 Heat of formation + Delta-G solvation = -97.492421 kcal Electronic energy + Delta-G solvation = -25121.759805 eV Core-core repulsion = 21235.848386 eV Total energy + Delta-G solvation = -3885.911419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.18590 -39.98531 -39.04543 -36.79968 -35.05518 -32.59424 -32.21620 -31.49871 -30.85823 -28.12445 -27.48513 -25.99130 -23.93775 -23.46861 -22.88697 -21.55329 -19.28930 -18.58818 -17.47509 -16.70247 -16.59961 -16.53556 -15.93371 -15.89200 -15.72745 -15.45646 -15.15314 -14.52146 -14.22564 -14.20431 -13.78270 -13.58374 -13.21111 -13.08828 -12.63123 -12.49179 -12.41355 -12.18265 -12.11396 -12.02083 -11.91615 -11.67383 -11.47179 -11.26367 -10.97083 -10.67767 -10.49434 -10.26123 -10.21004 -10.06424 -9.69767 -9.14585 -8.82525 -8.49818 -7.75555 -7.62736 -6.10808 -4.15889 0.73380 0.86006 1.16830 2.14531 3.09110 3.19606 3.26295 3.33102 3.37362 3.73849 3.97385 4.07155 4.38964 4.44099 4.47766 4.65072 4.66505 4.75650 4.90849 5.02907 5.23768 5.23983 5.35270 5.46553 5.65190 5.70845 5.73476 5.74824 5.83709 5.88804 5.98805 6.01748 6.15118 6.39342 6.50265 6.91464 7.31973 7.34926 7.46023 7.84882 8.15041 8.27004 8.75914 8.92450 9.49362 10.97375 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002590 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.484141 B =10808.843338 C =11278.814349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.586 5.586 3 C 0.243 3.757 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.484 3.516 13 O -0.538 6.538 14 C 0.138 3.862 15 C -0.140 4.140 16 O -0.539 6.539 17 C -0.127 4.127 18 S -0.067 6.067 19 C -0.063 4.063 20 C -0.145 4.145 21 C -0.068 4.068 22 C -0.165 4.165 23 C 0.115 3.885 24 F -0.138 7.138 25 C -0.140 4.140 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.380 0.620 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.405 -20.240 5.991 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.317 5.317 3 C 0.124 3.876 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.267 3.733 13 O -0.416 6.416 14 C 0.092 3.908 15 C -0.198 4.198 16 O -0.346 6.346 17 C -0.276 4.276 18 S 0.180 5.820 19 C -0.176 4.176 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.187 4.187 23 C 0.095 3.905 24 F -0.117 7.117 25 C -0.165 4.165 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.228 0.772 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.118 -20.329 4.943 21.538 hybrid contribution 1.713 0.607 0.211 1.830 sum -3.405 -19.722 5.154 20.667 Atomic orbital electron populations 1.21883 0.80348 1.02836 1.00928 1.48161 1.06889 1.07292 1.69385 1.19361 0.92523 0.78025 0.97722 1.21392 1.36680 1.06369 0.92142 0.92427 1.24939 0.95282 0.96351 0.97529 1.69925 1.38297 1.14329 1.30794 0.86485 0.77731 0.78639 0.84516 1.20569 1.21050 1.19848 1.20700 0.88162 0.85546 0.78875 1.90691 1.13581 1.86987 1.50339 1.21097 0.84543 0.91154 0.94014 1.21846 1.03422 1.02931 0.91557 1.86652 1.29688 1.92399 1.25824 1.24368 1.03405 0.94002 1.05804 1.85637 1.24218 0.99431 1.72705 1.21832 0.98117 0.96743 1.00940 1.21378 0.93574 1.00968 1.01023 1.20958 0.99197 0.92052 0.96599 1.21150 0.96556 0.97010 1.03952 1.17518 0.94945 0.77740 1.00340 1.91508 1.93549 1.32326 1.94312 1.20634 1.00758 0.91487 1.03632 0.93637 0.91774 0.90319 0.94793 0.93892 0.92647 0.90502 0.90093 0.90283 0.77178 0.86877 0.88729 0.84814 0.84558 0.84607 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 9.03 59.85 0.54 1.85 16 2 N -0.59 -11.80 2.86 -182.96 -0.52 -12.32 16 3 C 0.24 6.16 5.16 -5.19 -0.03 6.13 16 4 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.48 9.26 6.61 -10.99 -0.07 9.19 16 13 O -0.54 -12.47 15.57 5.56 0.09 -12.38 16 14 C 0.14 1.90 0.64 -91.77 -0.06 1.84 16 15 C -0.14 -1.84 8.32 37.16 0.31 -1.54 16 16 O -0.54 -6.37 9.22 -35.23 -0.32 -6.69 16 17 C -0.13 -1.56 3.19 37.16 0.12 -1.44 16 18 S -0.07 -0.74 19.96 -107.50 -2.15 -2.89 16 19 C -0.06 -0.69 6.11 -39.05 -0.24 -0.93 16 20 C -0.15 -1.50 9.36 -39.36 -0.37 -1.87 16 21 C -0.07 -0.60 10.04 -39.62 -0.40 -1.00 16 22 C -0.16 -1.47 10.02 -39.46 -0.40 -1.86 16 23 C 0.12 1.18 7.30 -39.45 -0.29 0.89 16 24 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 25 C -0.14 -1.46 9.77 -39.30 -0.38 -1.85 16 26 H 0.05 0.61 7.80 -51.93 -0.41 0.20 16 27 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 28 H 0.08 1.11 4.52 -51.93 -0.23 0.87 16 29 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 30 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 1.04 6.84 -51.93 -0.36 0.68 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.92 6.72 -51.93 -0.35 0.57 16 35 H 0.38 3.57 8.92 45.56 0.41 3.97 16 36 H 0.11 1.52 7.28 -51.92 -0.38 1.14 16 37 H 0.09 1.09 7.76 -51.93 -0.40 0.69 16 38 H 0.13 1.37 5.88 -52.49 -0.31 1.06 16 39 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 357.12 15.07 5.38 5.38 Total: -1.00 -32.06 357.12 -7.94 -40.00 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.49 Total: 3.16 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.68 Total: -3.92 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.21 Total: -37.74 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.24 Total: -19.07 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.15 Total: -2.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.06 -7.94 -40.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285240305.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.496 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds