Wall clock time and date at job start Tue Mar 31 2020 14:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 120.00481 * 2 1 4 4 C 1.50696 * 109.46706 * 270.00046 * 3 2 1 5 5 H 1.07998 * 120.00581 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99973 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99921 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00389 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47306 * 90.00275 * 8 6 4 10 10 H 1.48496 * 109.47438 * 210.00407 * 8 6 4 11 11 H 1.48506 * 109.47040 * 330.00311 * 8 6 4 12 12 C 1.34778 * 119.99895 * 179.97438 * 2 1 3 13 13 O 1.21279 * 120.00041 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00078 * 359.97438 * 12 2 1 15 15 C 1.52999 * 109.47150 * 85.00012 * 14 12 2 16 16 O 1.42905 * 109.47321 * 325.00355 * 14 12 2 17 17 C 1.52997 * 109.47342 * 205.00344 * 14 12 2 18 18 S 1.81406 * 109.46873 * 185.00163 * 17 14 12 19 19 C 1.76207 * 102.99534 * 179.97438 * 18 17 14 20 20 C 1.39003 * 120.07031 * 359.72298 * 19 18 17 21 21 C 1.38074 * 119.96919 * 179.76870 * 20 19 18 22 22 C 1.38283 * 120.10719 * 0.50728 * 21 20 19 23 23 C 1.38516 * 120.13382 * 359.75056 * 22 21 20 24 24 F 1.35100 * 119.98653 * 180.02562 * 23 22 21 25 25 C 1.38328 * 120.02451 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47177 * 270.00315 * 1 2 3 27 27 H 1.09001 * 109.47042 * 30.00031 * 1 2 3 28 28 H 1.08996 * 109.47263 * 150.00343 * 1 2 3 29 29 H 1.09005 * 109.46542 * 29.99350 * 3 2 1 30 30 H 1.08991 * 109.47281 * 149.99598 * 3 2 1 31 31 H 0.96996 * 120.00150 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47362 * 300.00765 * 15 14 12 33 33 H 1.09002 * 109.46716 * 60.00124 * 15 14 12 34 34 H 1.09000 * 109.47486 * 180.02562 * 15 14 12 35 35 H 0.96696 * 114.00036 * 299.99741 * 16 14 12 36 36 H 1.09000 * 109.47278 * 304.99798 * 17 14 12 37 37 H 1.08994 * 109.47510 * 65.00307 * 17 14 12 38 38 H 1.08000 * 120.01500 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.94623 * 180.23318 * 21 20 19 40 40 H 1.07992 * 119.93659 * 179.76574 * 22 21 20 41 41 H 1.08001 * 120.04882 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1261 2.8777 -1.6728 7 7 3.5535 3.6179 -0.6733 8 14 3.4381 3.4166 -3.4340 9 1 2.3081 4.2590 -3.9015 10 1 4.6982 4.1999 -3.4962 11 1 3.5562 2.2192 -4.3044 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3853 -2.4723 0.0017 15 6 1.0209 -2.8521 -1.4349 16 8 0.1916 -2.3325 0.7748 17 6 2.2627 -3.5672 0.6118 18 16 1.4148 -5.1655 0.4789 19 6 2.5579 -6.2832 1.2198 20 6 3.7693 -5.8143 1.7146 21 6 4.6614 -6.6913 2.2991 22 6 4.3564 -8.0374 2.3837 23 6 3.1528 -8.5102 1.8872 24 9 2.8576 -9.8258 1.9719 25 6 2.2525 -7.6356 1.3057 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1383 0.5138 31 1 4.0304 4.4437 -0.8505 32 1 0.3959 -2.0720 -1.8696 33 1 1.9314 -2.9587 -2.0246 34 1 0.4755 -3.7958 -1.4341 35 1 0.3471 -2.0920 1.6984 36 1 3.2110 -3.6135 0.0764 37 1 2.4488 -3.3409 1.6616 38 1 4.0112 -4.7641 1.6450 39 1 5.6009 -6.3260 2.6868 40 1 5.0578 -8.7214 2.8380 41 1 1.3138 -8.0038 0.9188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285240305.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:54 Heat of formation + Delta-G solvation = -117.576458 kcal Electronic energy + Delta-G solvation = -25122.630714 eV Core-core repulsion = 21235.848386 eV Total energy + Delta-G solvation = -3886.782328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97314 -41.39726 -39.79217 -38.09699 -36.74709 -34.65578 -33.29003 -32.24080 -31.65045 -29.93428 -28.63542 -27.44377 -25.71162 -24.28272 -23.73128 -22.97002 -20.59612 -19.41686 -18.81946 -18.63721 -17.54738 -17.45637 -17.23291 -16.84867 -16.67635 -16.57439 -16.44707 -16.26379 -15.63292 -15.17510 -14.84433 -14.49398 -14.36198 -14.21020 -13.99756 -13.76864 -13.61125 -13.46483 -13.43897 -13.25658 -13.13418 -12.88234 -12.82485 -12.67912 -12.53106 -12.37425 -12.23072 -11.74471 -11.66756 -11.18332 -10.82915 -10.65679 -10.30233 -9.91560 -9.46770 -8.46826 -8.24518 -6.39129 -0.03157 0.10687 0.25642 1.24237 1.36233 1.38593 1.48528 1.60110 2.24889 2.40564 2.44548 3.02238 3.05502 3.21921 3.36613 3.52235 3.63977 3.73013 3.96462 4.00997 4.27426 4.29939 4.43991 4.52074 4.54251 4.70293 4.72151 4.78541 4.93023 4.96437 4.96986 5.04557 5.10912 5.18385 5.19755 5.26384 5.53390 5.77257 5.79024 6.03027 6.42691 6.67550 6.73272 7.21633 7.36720 8.82585 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002590 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.484141 B =10808.843338 C =11278.814349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.593 5.593 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.478 3.522 13 O -0.586 6.586 14 C 0.159 3.841 15 C -0.140 4.140 16 O -0.531 6.531 17 C -0.124 4.124 18 S -0.051 6.051 19 C -0.079 4.079 20 C -0.156 4.156 21 C -0.068 4.068 22 C -0.159 4.159 23 C 0.104 3.896 24 F -0.142 7.142 25 C -0.146 4.146 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.025 0.975 30 H 0.002 0.998 31 H 0.267 0.733 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.393 0.607 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -21.669 5.680 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.323 5.323 3 C 0.135 3.865 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.264 3.736 13 O -0.467 6.467 14 C 0.113 3.887 15 C -0.198 4.198 16 O -0.339 6.339 17 C -0.273 4.273 18 S 0.195 5.805 19 C -0.192 4.192 20 C -0.180 4.180 21 C -0.087 4.087 22 C -0.181 4.181 23 C 0.083 3.917 24 F -0.121 7.121 25 C -0.171 4.171 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.244 0.756 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.177 0.823 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.017 -21.780 4.651 23.069 hybrid contribution 1.992 0.987 0.395 2.258 sum -4.024 -20.793 5.046 21.771 Atomic orbital electron populations 1.22111 0.77419 1.03364 1.02963 1.48152 1.08606 1.06048 1.69543 1.18829 0.91196 0.80315 0.96141 1.21671 1.36870 1.06593 0.92989 0.92896 1.25838 0.94903 0.96421 1.01899 1.70039 1.38899 1.14794 1.32997 0.85437 0.78064 0.78278 0.79195 1.18925 1.20625 1.19655 1.21704 0.87916 0.86892 0.77138 1.90658 1.16007 1.87880 1.52175 1.20739 0.84601 0.88245 0.95148 1.21876 1.03300 1.03872 0.90741 1.86631 1.28254 1.92182 1.26839 1.24209 1.02585 0.94723 1.05810 1.85453 1.23736 0.98148 1.73142 1.21886 0.98511 0.96911 1.01867 1.21501 0.93856 1.01217 1.01400 1.21253 0.99760 0.91864 0.95842 1.21448 0.96316 0.97398 1.02902 1.17689 0.95552 0.77605 1.00873 1.91498 1.93646 1.32551 1.94392 1.20740 1.01253 0.91372 1.03715 0.90790 0.92807 0.88199 0.95722 0.98023 0.92364 0.90703 0.90856 0.88199 0.75589 0.88325 0.88130 0.85141 0.82175 0.82289 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.50 9.03 127.77 1.15 3.65 16 2 N -0.59 -24.11 2.86 -851.15 -2.43 -26.54 16 3 C 0.26 13.49 5.16 85.63 0.44 13.93 16 4 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.48 5.46 84.65 0.46 0.95 16 7 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 8 Si 0.97 44.30 29.54 68.60 2.03 46.33 16 9 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.48 18.48 6.61 87.66 0.58 19.06 16 13 O -0.59 -28.18 15.57 -3.03 -0.05 -28.23 16 14 C 0.16 4.22 0.64 -11.54 -0.01 4.21 16 15 C -0.14 -3.50 8.32 71.98 0.60 -2.90 16 16 O -0.53 -11.26 9.22 -148.98 -1.37 -12.63 16 17 C -0.12 -2.97 3.19 71.98 0.23 -2.74 16 18 S -0.05 -1.05 19.96 -56.49 -1.13 -2.18 16 19 C -0.08 -1.63 6.11 22.62 0.14 -1.49 16 20 C -0.16 -3.05 9.36 22.41 0.21 -2.84 16 21 C -0.07 -1.07 10.04 22.24 0.22 -0.84 16 22 C -0.16 -2.49 10.02 22.35 0.22 -2.26 16 23 C 0.10 1.96 7.30 22.36 0.16 2.12 16 24 F -0.14 -2.81 17.27 44.97 0.78 -2.03 16 25 C -0.15 -2.86 9.77 22.45 0.22 -2.64 16 26 H 0.07 1.81 7.80 -2.39 -0.02 1.79 16 27 H 0.05 1.73 8.07 -2.39 -0.02 1.71 16 28 H 0.10 2.59 4.52 -2.39 -0.01 2.58 16 29 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 30 H 0.00 0.10 7.42 -2.39 -0.02 0.08 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.07 1.90 6.84 -2.39 -0.02 1.88 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.10 2.09 6.72 -2.39 -0.02 2.07 16 35 H 0.39 6.36 8.92 -74.06 -0.66 5.70 16 36 H 0.10 2.68 7.28 -2.39 -0.02 2.66 16 37 H 0.10 2.25 7.76 -2.39 -0.02 2.23 16 38 H 0.13 2.61 5.88 -2.91 -0.02 2.59 16 39 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -70.75 357.12 3.39 -67.37 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.41 Total: 15.32 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.88 Total: -2.34 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.15 Total: -81.59 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.42 Total: -40.86 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -1.13 Total: -2.18 kcal Total: -70.75 3.39 -67.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285240305.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.211 kcal (2) G-P(sol) polarization free energy of solvation -70.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds