Wall clock time and date at job start Tue Mar 31 2020 15:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.46891 * 85.00222 * 15 13 12 17 17 O 1.42896 * 109.47243 * 325.00035 * 15 13 12 18 18 C 1.53008 * 109.46958 * 205.00100 * 15 13 12 19 19 S 1.81400 * 109.46749 * 184.99858 * 18 15 13 20 20 C 1.76196 * 102.99513 * 179.97438 * 19 18 15 21 21 C 1.39012 * 120.07073 * 359.72820 * 20 19 18 22 22 C 1.38073 * 119.97090 * 179.76514 * 21 20 19 23 23 C 1.38300 * 120.10404 * 0.51024 * 22 21 20 24 24 C 1.38511 * 120.13089 * 359.74326 * 23 22 21 25 25 F 1.35098 * 119.98154 * 180.02562 * 24 23 22 26 26 C 1.38318 * 120.03146 * 359.97438 * 24 23 22 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 32 32 H 1.09004 * 109.47508 * 60.00036 * 16 15 13 33 33 H 1.09001 * 109.47131 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47425 * 299.99648 * 16 15 13 35 35 H 0.96708 * 114.00012 * 300.00376 * 17 15 13 36 36 H 1.08999 * 109.46815 * 304.99887 * 18 15 13 37 37 H 1.08999 * 109.47008 * 65.00105 * 18 15 13 38 38 H 1.07994 * 120.01287 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.94964 * 180.22818 * 22 21 20 40 40 H 1.07996 * 119.92825 * 179.76367 * 23 22 21 41 41 H 1.08005 * 120.05192 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 1.4791 -1.4225 -4.2887 17 8 3.6238 -1.7033 -3.2109 18 6 3.2842 0.2866 -4.5396 19 16 3.7548 -0.5432 -6.0825 20 6 4.4556 0.7620 -7.0365 21 6 4.5176 2.0495 -6.5160 22 6 5.0716 3.0697 -7.2634 23 6 5.5556 2.8151 -8.5337 24 6 5.4912 1.5349 -9.0586 25 9 5.9654 1.2894 -10.2996 26 6 4.9427 0.5075 -8.3124 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7082 1.1609 3.4844 31 1 2.2490 -1.6318 -1.1526 32 1 0.7354 -0.6793 -4.5762 33 1 1.8419 -1.9361 -5.1791 34 1 1.0264 -2.1460 -3.6106 35 1 4.3955 -1.3337 -2.7601 36 1 2.5676 1.0786 -4.7569 37 1 4.1706 0.7165 -4.0733 38 1 4.1365 2.2508 -5.5258 39 1 5.1230 4.0690 -6.8573 40 1 5.9849 3.6159 -9.1173 41 1 4.8927 -0.4909 -8.7212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285301241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:55 Heat of formation + Delta-G solvation = -113.567510 kcal Electronic energy + Delta-G solvation = -24823.092474 eV Core-core repulsion = 20936.483987 eV Total energy + Delta-G solvation = -3886.608487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.19241 -39.82164 -39.05242 -36.89835 -34.99750 -32.44809 -32.21954 -31.50558 -30.87221 -29.03447 -27.63938 -25.33476 -23.82254 -23.36399 -22.80067 -20.74484 -19.56443 -18.58608 -18.36234 -16.78556 -16.69581 -16.29476 -15.90056 -15.83147 -15.66116 -15.42833 -15.14871 -14.65454 -14.20780 -14.03358 -13.80950 -13.58530 -13.22785 -13.01909 -12.58407 -12.50979 -12.46521 -12.22765 -12.07522 -11.84488 -11.73858 -11.52984 -11.16134 -11.01999 -10.92141 -10.79880 -10.39318 -10.31288 -10.29867 -10.07545 -9.15649 -9.15081 -8.98974 -8.62460 -8.06098 -7.63851 -6.19080 -4.28960 0.72532 0.85246 1.15515 2.13353 3.05118 3.18792 3.21753 3.27229 3.28309 3.78087 3.96776 4.08544 4.30044 4.43291 4.44760 4.63990 4.65441 4.74660 5.02030 5.13130 5.22950 5.23643 5.33623 5.44623 5.64437 5.69713 5.72279 5.75692 5.82860 5.97873 6.08665 6.49488 6.72713 6.86692 7.04759 7.28419 7.33686 7.49855 7.61985 7.81477 8.06087 8.51389 8.66629 8.93830 9.38590 10.86761 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.002370 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.942263 B =11813.631328 C =12062.297830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.692 5.692 13 C 0.481 3.519 14 O -0.550 6.550 15 C 0.135 3.865 16 C -0.139 4.139 17 O -0.542 6.542 18 C -0.128 4.128 19 S -0.067 6.067 20 C -0.063 4.063 21 C -0.145 4.145 22 C -0.068 4.068 23 C -0.165 4.165 24 C 0.116 3.884 25 F -0.138 7.138 26 C -0.140 4.140 27 H 0.014 0.986 28 H 0.091 0.909 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.384 0.616 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -0.323 -19.403 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.340 5.340 13 C 0.262 3.738 14 O -0.430 6.430 15 C 0.089 3.911 16 C -0.197 4.197 17 O -0.348 6.348 18 C -0.277 4.277 19 S 0.180 5.820 20 C -0.176 4.176 21 C -0.169 4.169 22 C -0.088 4.088 23 C -0.187 4.187 24 C 0.095 3.905 25 F -0.117 7.117 26 C -0.165 4.165 27 H 0.033 0.967 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.093 -1.017 -19.742 20.686 hybrid contribution 1.087 0.914 1.244 1.888 sum 7.180 -0.103 -18.498 19.843 Atomic orbital electron populations 1.22084 0.98288 0.99271 1.00978 1.18811 0.91183 0.93923 0.79903 0.93367 1.21165 1.32716 1.13329 0.90214 0.91999 1.24890 0.94743 0.94931 0.99104 1.69885 1.35673 1.22406 1.24107 0.86485 0.79176 0.79633 0.81685 1.20140 1.21111 1.20086 1.46540 1.63319 1.14089 1.10005 1.20808 0.80093 0.87574 0.85275 1.90679 1.51727 1.15764 1.84814 1.21151 0.90196 0.87893 0.91825 1.21792 0.95418 1.01489 1.00966 1.86575 1.33326 1.35005 1.79902 1.24375 1.05286 1.02311 0.95695 1.85653 1.72583 1.11811 1.11965 1.21833 1.00954 0.97670 0.97192 1.21377 1.02451 0.91832 1.01288 1.20961 0.95446 0.99414 0.92982 1.21155 1.04477 0.95581 0.97446 1.17514 0.98341 0.94093 0.80579 1.91508 1.86056 1.95057 1.39066 1.20636 1.02569 0.99545 0.93758 0.96654 0.89021 0.95329 0.92443 0.77043 0.90156 0.90237 0.90615 0.76777 0.86890 0.88628 0.84815 0.84552 0.84597 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.43 2.56 -69.08 -0.18 6.26 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 4 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.69 -13.60 4.98 -54.93 -0.27 -13.87 16 13 C 0.48 8.74 6.66 -10.98 -0.07 8.66 16 14 O -0.55 -11.93 15.65 5.56 0.09 -11.85 16 15 C 0.14 1.82 1.00 -91.77 -0.09 1.73 16 16 C -0.14 -1.72 8.51 37.16 0.32 -1.41 16 17 O -0.54 -6.74 12.04 -35.23 -0.42 -7.17 16 18 C -0.13 -1.54 3.19 37.16 0.12 -1.42 16 19 S -0.07 -0.74 19.96 -107.50 -2.15 -2.89 16 20 C -0.06 -0.69 6.11 -39.04 -0.24 -0.93 16 21 C -0.15 -1.49 9.36 -39.36 -0.37 -1.85 16 22 C -0.07 -0.60 10.04 -39.62 -0.40 -0.99 16 23 C -0.16 -1.45 10.02 -39.46 -0.40 -1.85 16 24 C 0.12 1.17 7.30 -39.45 -0.29 0.88 16 25 F -0.14 -1.45 17.27 2.25 0.04 -1.42 16 26 C -0.14 -1.45 9.77 -39.30 -0.38 -1.84 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.40 7.02 7.97 -40.82 -0.33 6.70 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.89 6.72 -51.93 -0.35 0.54 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.38 3.89 9.04 45.56 0.41 4.30 16 36 H 0.11 1.45 7.28 -51.92 -0.38 1.07 16 37 H 0.10 1.11 7.76 -51.92 -0.40 0.70 16 38 H 0.13 1.34 5.88 -52.49 -0.31 1.03 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -29.56 360.97 -8.26 -37.82 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.56 Total: 10.78 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.03 Total: -8.37 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.35 Total: -37.53 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.34 Total: -19.02 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.15 Total: -2.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.56 -8.26 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285301241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.749 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds