Wall clock time and date at job start Tue Mar 31 2020 15:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.46891 * 85.00222 * 15 13 12 17 17 O 1.42896 * 109.47243 * 325.00035 * 15 13 12 18 18 C 1.53008 * 109.46958 * 205.00100 * 15 13 12 19 19 S 1.81400 * 109.46749 * 184.99858 * 18 15 13 20 20 C 1.76196 * 102.99513 * 179.97438 * 19 18 15 21 21 C 1.39012 * 120.07073 * 359.72820 * 20 19 18 22 22 C 1.38073 * 119.97090 * 179.76514 * 21 20 19 23 23 C 1.38300 * 120.10404 * 0.51024 * 22 21 20 24 24 C 1.38511 * 120.13089 * 359.74326 * 23 22 21 25 25 F 1.35098 * 119.98154 * 180.02562 * 24 23 22 26 26 C 1.38318 * 120.03146 * 359.97438 * 24 23 22 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 32 32 H 1.09004 * 109.47508 * 60.00036 * 16 15 13 33 33 H 1.09001 * 109.47131 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47425 * 299.99648 * 16 15 13 35 35 H 0.96708 * 114.00012 * 300.00376 * 17 15 13 36 36 H 1.08999 * 109.46815 * 304.99887 * 18 15 13 37 37 H 1.08999 * 109.47008 * 65.00105 * 18 15 13 38 38 H 1.07994 * 120.01287 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.94964 * 180.22818 * 22 21 20 40 40 H 1.07996 * 119.92825 * 179.76367 * 23 22 21 41 41 H 1.08005 * 120.05192 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8074 -1.1189 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 6 1.4791 -1.4225 -4.2887 17 8 3.6238 -1.7033 -3.2109 18 6 3.2842 0.2866 -4.5396 19 16 3.7548 -0.5432 -6.0825 20 6 4.4556 0.7620 -7.0365 21 6 4.5176 2.0495 -6.5160 22 6 5.0716 3.0697 -7.2634 23 6 5.5556 2.8151 -8.5337 24 6 5.4912 1.5349 -9.0586 25 9 5.9654 1.2894 -10.2996 26 6 4.9427 0.5075 -8.3124 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7082 1.1609 3.4844 31 1 2.2490 -1.6318 -1.1526 32 1 0.7354 -0.6793 -4.5762 33 1 1.8419 -1.9361 -5.1791 34 1 1.0264 -2.1460 -3.6106 35 1 4.3955 -1.3337 -2.7601 36 1 2.5676 1.0786 -4.7569 37 1 4.1706 0.7165 -4.0733 38 1 4.1365 2.2508 -5.5258 39 1 5.1230 4.0690 -6.8573 40 1 5.9849 3.6159 -9.1173 41 1 4.8927 -0.4909 -8.7212 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285301241.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:54 Heat of formation + Delta-G solvation = -132.402954 kcal Electronic energy + Delta-G solvation = -24823.909241 eV Core-core repulsion = 20936.483987 eV Total energy + Delta-G solvation = -3887.425253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97590 -41.23755 -39.79235 -38.18246 -36.79261 -34.30753 -33.29675 -32.24064 -31.66789 -30.86063 -28.63775 -27.34966 -25.11503 -24.21018 -23.62983 -22.37462 -21.05931 -19.78770 -19.36166 -18.16045 -17.49765 -17.46106 -17.21291 -16.85774 -16.67892 -16.49908 -16.38662 -16.30194 -15.48227 -15.19630 -14.85894 -14.45444 -14.43157 -14.25249 -14.05294 -13.77314 -13.50892 -13.44252 -13.27172 -13.05868 -12.90245 -12.86010 -12.76831 -12.72153 -12.38846 -12.27965 -12.15804 -11.94965 -11.20082 -11.13536 -10.83417 -10.63381 -10.44264 -9.91748 -9.81521 -8.47593 -8.18580 -6.35937 -0.03280 0.10555 0.25331 1.24326 1.45639 1.46764 1.54624 1.58804 2.30033 2.44445 2.51413 3.03100 3.12064 3.21862 3.37006 3.61619 3.72757 3.81382 3.96397 4.00889 4.29045 4.30049 4.46017 4.52360 4.70557 4.72747 4.76872 4.90370 4.92982 4.96554 5.07309 5.10344 5.10940 5.26184 5.40097 5.57419 5.65504 5.77151 5.85089 6.07984 6.44019 6.70948 6.88868 7.28754 7.44480 8.87211 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.002370 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.942263 B =11813.631328 C =12062.297830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.003 0.997 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.690 5.690 13 C 0.481 3.519 14 O -0.587 6.587 15 C 0.153 3.847 16 C -0.140 4.140 17 O -0.539 6.539 18 C -0.125 4.125 19 S -0.056 6.056 20 C -0.078 4.078 21 C -0.155 4.155 22 C -0.067 4.067 23 C -0.159 4.159 24 C 0.104 3.896 25 F -0.142 7.142 26 C -0.147 4.147 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.408 0.592 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.395 0.605 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 -1.299 -20.215 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.021 0.979 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.339 5.339 13 C 0.265 3.735 14 O -0.469 6.469 15 C 0.107 3.893 16 C -0.197 4.197 17 O -0.347 6.347 18 C -0.274 4.274 19 S 0.191 5.809 20 C -0.192 4.192 21 C -0.179 4.179 22 C -0.087 4.087 23 C -0.181 4.181 24 C 0.083 3.917 25 F -0.121 7.121 26 C -0.171 4.171 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.245 0.755 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.177 0.823 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.239 -2.021 -20.583 21.913 hybrid contribution 0.775 1.287 1.410 2.061 sum 8.015 -0.734 -19.173 20.794 Atomic orbital electron populations 1.21914 0.98265 0.99498 0.99746 1.18390 0.91159 0.92000 0.81764 0.97942 1.21498 1.32694 1.13581 0.90748 0.90900 1.25768 0.94864 0.95558 1.02252 1.70033 1.36853 1.23871 1.24696 0.85423 0.78713 0.78684 0.77687 1.19496 1.21265 1.19040 1.46274 1.63692 1.14508 1.09388 1.21649 0.78777 0.87140 0.85977 1.90660 1.53048 1.17681 1.85498 1.20892 0.90959 0.87951 0.89532 1.21843 0.94962 1.01495 1.01424 1.86574 1.33523 1.34620 1.79980 1.24232 1.05108 1.01703 0.96358 1.85510 1.72878 1.11586 1.10971 1.21884 1.01886 0.97889 0.97503 1.21508 1.02783 0.92119 1.01514 1.21262 0.94465 1.00182 0.92776 1.21456 1.03461 0.95643 0.97500 1.17687 0.98788 0.94701 0.80555 1.91498 1.86159 1.95143 1.39308 1.20739 1.02601 1.00112 0.93690 0.96659 0.91424 0.94183 0.92524 0.75669 0.90108 0.88650 0.90604 0.75490 0.87782 0.88323 0.85027 0.82106 0.82278 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.27 13.46 2.56 44.25 0.11 13.57 16 3 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 4 C -0.55 -28.05 8.73 25.60 0.22 -27.83 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.97 41.04 29.54 68.60 2.03 43.07 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 N -0.69 -27.05 4.98 -446.09 -2.22 -29.27 16 13 C 0.48 17.45 6.66 87.66 0.58 18.04 16 14 O -0.59 -26.03 15.65 -3.03 -0.05 -26.08 16 15 C 0.15 3.96 1.00 -11.54 -0.01 3.95 16 16 C -0.14 -3.25 8.51 71.98 0.61 -2.64 16 17 O -0.54 -12.43 12.04 -148.98 -1.79 -14.23 16 18 C -0.12 -2.92 3.19 71.98 0.23 -2.69 16 19 S -0.06 -1.16 19.96 -56.49 -1.13 -2.28 16 20 C -0.08 -1.62 6.11 22.62 0.14 -1.48 16 21 C -0.16 -2.99 9.36 22.42 0.21 -2.78 16 22 C -0.07 -1.04 10.04 22.25 0.22 -0.82 16 23 C -0.16 -2.46 10.02 22.35 0.22 -2.24 16 24 C 0.10 1.95 7.30 22.35 0.16 2.11 16 25 F -0.14 -2.81 17.27 44.97 0.78 -2.04 16 26 C -0.15 -2.87 9.77 22.45 0.22 -2.66 16 27 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 29 H 0.04 1.81 8.14 -2.38 -0.02 1.80 16 30 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.41 14.04 7.97 -92.71 -0.74 13.30 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.95 6.72 -2.39 -0.02 1.93 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.39 7.28 9.04 -74.05 -0.67 6.61 16 36 H 0.10 2.64 7.28 -2.39 -0.02 2.62 16 37 H 0.10 2.22 7.76 -2.39 -0.02 2.20 16 38 H 0.13 2.55 5.88 -2.91 -0.02 2.53 16 39 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -63.81 360.97 1.57 -62.24 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.33 Total: 29.86 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.04 Total: -10.18 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -1.98 Total: -80.36 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.84 Total: -40.31 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -1.13 Total: -2.28 kcal Total: -63.81 1.57 -62.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285301241.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.162 kcal (2) G-P(sol) polarization free energy of solvation -63.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds