Wall clock time and date at job start Tue Mar 31 2020 15:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.46609 * 84.99818 * 15 13 12 17 17 O 1.42900 * 109.47043 * 325.00513 * 15 13 12 18 18 C 1.52996 * 109.47349 * 204.99794 * 15 13 12 19 19 S 1.81405 * 109.47079 * 185.00112 * 18 15 13 20 20 C 1.76194 * 102.99954 * 180.02562 * 19 18 15 21 21 C 1.39011 * 120.06781 * 359.72343 * 20 19 18 22 22 C 1.38073 * 119.97111 * 179.76598 * 21 20 19 23 23 C 1.38286 * 120.10404 * 0.51184 * 22 21 20 24 24 C 1.38516 * 120.13261 * 359.74177 * 23 22 21 25 25 F 1.35099 * 119.98335 * 180.02562 * 24 23 22 26 26 C 1.38318 * 120.02943 * 0.02562 * 24 23 22 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.09001 * 109.47420 * 60.00597 * 16 15 13 33 33 H 1.09004 * 109.46832 * 180.02562 * 16 15 13 34 34 H 1.08992 * 109.47457 * 300.00256 * 16 15 13 35 35 H 0.96701 * 113.99240 * 299.99343 * 17 15 13 36 36 H 1.08995 * 109.47118 * 305.00415 * 18 15 13 37 37 H 1.08998 * 109.46746 * 65.00557 * 18 15 13 38 38 H 1.08001 * 120.01644 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.95002 * 180.22948 * 22 21 20 40 40 H 1.08005 * 119.93258 * 179.76250 * 23 22 21 41 41 H 1.08001 * 120.05009 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 6 4.1790 -0.7294 3.5878 17 8 2.1723 -2.0761 3.5875 18 6 2.1390 -0.0075 4.8368 19 16 2.8619 -0.7725 6.3143 20 6 2.1705 0.1744 7.6295 21 6 1.3006 1.2224 7.3507 22 6 0.7562 1.9600 8.3831 23 6 1.0830 1.6649 9.6940 24 6 1.9533 0.6250 9.9764 25 9 2.2701 0.3390 11.2582 26 6 2.4982 -0.1206 8.9467 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 4.5427 0.2982 3.5879 33 1 4.5421 -1.2437 4.4777 34 1 4.5423 -1.2432 2.6980 35 1 1.2083 -2.1521 3.5874 36 1 2.4277 1.0426 4.7931 37 1 1.0527 -0.0842 4.8825 38 1 1.0475 1.4568 6.3273 39 1 0.0775 2.7718 8.1663 40 1 0.6584 2.2462 10.4992 41 1 3.1766 -0.9317 9.1666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285301244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:58 Heat of formation + Delta-G solvation = -113.559744 kcal Electronic energy + Delta-G solvation = -24826.110480 eV Core-core repulsion = 20939.502330 eV Total energy + Delta-G solvation = -3886.608150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.19686 -39.82673 -39.05903 -36.90658 -35.00412 -32.45009 -32.22366 -31.51201 -30.87786 -29.05176 -27.61810 -25.35026 -23.83269 -23.36904 -22.80566 -20.73700 -19.57773 -18.59419 -18.36775 -16.80566 -16.70172 -16.30217 -15.90312 -15.81786 -15.59647 -15.41562 -15.26914 -14.66304 -14.21463 -13.97789 -13.78171 -13.60478 -13.22676 -13.07901 -12.55805 -12.54210 -12.47684 -12.17576 -12.05425 -11.84951 -11.79175 -11.53580 -11.15932 -11.04168 -10.89468 -10.82657 -10.37748 -10.31434 -10.30986 -10.08145 -9.16058 -9.14136 -8.99267 -8.63256 -8.06392 -7.64303 -6.19407 -4.28898 0.71986 0.84684 1.14993 2.12922 3.04765 3.18226 3.19860 3.28052 3.30891 3.77923 3.96254 4.07658 4.30486 4.42696 4.44580 4.63341 4.64893 4.73986 5.01492 5.13139 5.22356 5.23505 5.34293 5.44127 5.63869 5.70186 5.73090 5.77068 5.82322 5.97228 6.11378 6.48926 6.70507 6.83322 7.03114 7.27609 7.32119 7.49156 7.61831 7.80995 8.05378 8.51196 8.67074 8.93787 9.38761 10.86591 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.002345 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.183230 B =11938.222887 C =12482.815214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.692 5.692 13 C 0.482 3.518 14 O -0.550 6.550 15 C 0.135 3.865 16 C -0.139 4.139 17 O -0.541 6.541 18 C -0.127 4.127 19 S -0.067 6.067 20 C -0.063 4.063 21 C -0.146 4.146 22 C -0.068 4.068 23 C -0.165 4.165 24 C 0.116 3.884 25 F -0.138 7.138 26 C -0.140 4.140 27 H 0.013 0.987 28 H 0.028 0.972 29 H 0.092 0.908 30 H 0.264 0.736 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.382 0.618 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -1.837 20.926 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.339 5.339 13 C 0.263 3.737 14 O -0.430 6.430 15 C 0.089 3.911 16 C -0.197 4.197 17 O -0.347 6.347 18 C -0.276 4.276 19 S 0.180 5.820 20 C -0.177 4.177 21 C -0.170 4.170 22 C -0.088 4.088 23 C -0.187 4.187 24 C 0.095 3.905 25 F -0.117 7.117 26 C -0.165 4.165 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.371 -2.009 20.736 20.967 hybrid contribution -1.153 0.364 -0.672 1.384 sum 1.218 -1.645 20.064 20.168 Atomic orbital electron populations 1.22082 0.98301 0.99222 1.00950 1.18823 0.91111 0.94018 0.79969 0.93323 1.21239 1.32516 1.13294 0.90189 0.91903 1.24891 0.94753 0.94940 0.99131 1.69901 1.35871 1.22435 1.23892 0.86376 0.78645 0.79558 0.82443 1.19658 1.20831 1.20838 1.46535 1.63311 1.14084 1.10015 1.20800 0.79572 0.87840 0.85513 1.90679 1.51207 1.15866 1.85227 1.21158 0.97045 0.82352 0.90519 1.21798 0.90077 1.03757 1.04085 1.86587 1.27396 1.24021 1.96733 1.24370 1.04159 1.04826 0.94286 1.85667 1.58469 1.42397 0.95438 1.21834 0.99740 0.98968 0.97108 1.21375 0.98794 0.96219 1.00582 1.20958 0.97983 0.98558 0.91305 1.21154 1.00516 0.98711 0.98284 1.17516 0.97982 0.96659 0.78357 1.91509 1.91566 1.92961 1.35648 1.20634 1.03443 1.02164 0.90268 0.96773 0.95322 0.88995 0.92562 0.77035 0.90109 0.90267 0.90501 0.76944 0.86870 0.88690 0.84829 0.84556 0.84597 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.40 2.56 -69.08 -0.18 6.23 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.31 11.32 55.43 0.63 -23.68 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.24 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.69 -13.59 4.98 -54.93 -0.27 -13.86 16 13 C 0.48 8.74 6.66 -10.99 -0.07 8.67 16 14 O -0.55 -11.93 15.65 5.56 0.09 -11.84 16 15 C 0.13 1.82 1.00 -91.77 -0.09 1.73 16 16 C -0.14 -1.76 8.51 37.16 0.32 -1.45 16 17 O -0.54 -6.65 12.05 -35.23 -0.42 -7.08 16 18 C -0.13 -1.53 3.19 37.16 0.12 -1.41 16 19 S -0.07 -0.73 19.96 -107.50 -2.15 -2.88 16 20 C -0.06 -0.68 6.11 -39.05 -0.24 -0.92 16 21 C -0.15 -1.47 9.36 -39.36 -0.37 -1.84 16 22 C -0.07 -0.59 10.04 -39.62 -0.40 -0.99 16 23 C -0.16 -1.44 10.02 -39.46 -0.40 -1.83 16 24 C 0.12 1.17 7.30 -39.45 -0.29 0.88 16 25 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 26 C -0.14 -1.45 9.77 -39.30 -0.38 -1.83 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.40 7.03 7.98 -40.82 -0.33 6.70 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.90 6.72 -51.93 -0.35 0.55 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.38 3.73 9.04 45.56 0.41 4.14 16 36 H 0.11 1.45 7.28 -51.93 -0.38 1.07 16 37 H 0.09 1.08 7.76 -51.93 -0.40 0.68 16 38 H 0.13 1.32 5.88 -52.49 -0.31 1.01 16 39 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -29.65 360.98 -8.26 -37.92 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.56 Total: 10.49 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.03 Total: -8.34 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.35 Total: -37.54 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.34 Total: -18.92 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.15 Total: -2.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.65 -8.26 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285301244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.644 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds