Wall clock time and date at job start Tue Mar 31 2020 15:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 C 1.53005 * 109.46609 * 84.99818 * 15 13 12 17 17 O 1.42900 * 109.47043 * 325.00513 * 15 13 12 18 18 C 1.52996 * 109.47349 * 204.99794 * 15 13 12 19 19 S 1.81405 * 109.47079 * 185.00112 * 18 15 13 20 20 C 1.76194 * 102.99954 * 180.02562 * 19 18 15 21 21 C 1.39011 * 120.06781 * 359.72343 * 20 19 18 22 22 C 1.38073 * 119.97111 * 179.76598 * 21 20 19 23 23 C 1.38286 * 120.10404 * 0.51184 * 22 21 20 24 24 C 1.38516 * 120.13261 * 359.74177 * 23 22 21 25 25 F 1.35099 * 119.98335 * 180.02562 * 24 23 22 26 26 C 1.38318 * 120.02943 * 0.02562 * 24 23 22 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 31 31 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 32 32 H 1.09001 * 109.47420 * 60.00597 * 16 15 13 33 33 H 1.09004 * 109.46832 * 180.02562 * 16 15 13 34 34 H 1.08992 * 109.47457 * 300.00256 * 16 15 13 35 35 H 0.96701 * 113.99240 * 299.99343 * 17 15 13 36 36 H 1.08995 * 109.47118 * 305.00415 * 18 15 13 37 37 H 1.08998 * 109.46746 * 65.00557 * 18 15 13 38 38 H 1.08001 * 120.01644 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.95002 * 180.22948 * 22 21 20 40 40 H 1.08005 * 119.93258 * 179.76250 * 23 22 21 41 41 H 1.08001 * 120.05009 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 6 4.1790 -0.7294 3.5878 17 8 2.1723 -2.0761 3.5875 18 6 2.1390 -0.0075 4.8368 19 16 2.8619 -0.7725 6.3143 20 6 2.1705 0.1744 7.6295 21 6 1.3006 1.2224 7.3507 22 6 0.7562 1.9600 8.3831 23 6 1.0830 1.6649 9.6940 24 6 1.9533 0.6250 9.9764 25 9 2.2701 0.3390 11.2582 26 6 2.4982 -0.1206 8.9467 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7093 1.1619 -3.4844 31 1 2.2491 -1.6318 1.1525 32 1 4.5427 0.2982 3.5879 33 1 4.5421 -1.2437 4.4777 34 1 4.5423 -1.2432 2.6980 35 1 1.2083 -2.1521 3.5874 36 1 2.4277 1.0426 4.7931 37 1 1.0527 -0.0842 4.8825 38 1 1.0475 1.4568 6.3273 39 1 0.0775 2.7718 8.1663 40 1 0.6584 2.2462 10.4992 41 1 3.1766 -0.9317 9.1666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285301244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:57 Heat of formation + Delta-G solvation = -132.518068 kcal Electronic energy + Delta-G solvation = -24826.932575 eV Core-core repulsion = 20939.502330 eV Total energy + Delta-G solvation = -3887.430245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97432 -41.24059 -39.79085 -38.18480 -36.79681 -34.31228 -33.30099 -32.23906 -31.66925 -30.86167 -28.62534 -27.36095 -25.13111 -24.20556 -23.62579 -22.36323 -21.06868 -19.79206 -19.36363 -18.17741 -17.50681 -17.46100 -17.17523 -16.80858 -16.67931 -16.54991 -16.38488 -16.36623 -15.37974 -15.22084 -14.86564 -14.49077 -14.43787 -14.25031 -14.08038 -13.69150 -13.54296 -13.44448 -13.29421 -13.03929 -12.94813 -12.87482 -12.75620 -12.70756 -12.38289 -12.29809 -12.13855 -11.94268 -11.19776 -11.11434 -10.83216 -10.65325 -10.44498 -9.91506 -9.81495 -8.47498 -8.19442 -6.36483 -0.03011 0.10811 0.25437 1.24633 1.43414 1.45265 1.56297 1.58917 2.30157 2.44727 2.50741 3.02923 3.11321 3.22102 3.37045 3.61411 3.72981 3.81268 3.96665 4.01088 4.29159 4.30244 4.46011 4.52582 4.70626 4.72321 4.77053 4.89840 4.93255 4.96818 5.06678 5.10528 5.11205 5.26393 5.40471 5.57342 5.65509 5.77390 5.85544 6.08187 6.44740 6.70879 6.88821 7.28459 7.44172 8.86717 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.002345 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.183230 B =11938.222887 C =12482.815214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.690 5.690 13 C 0.481 3.519 14 O -0.587 6.587 15 C 0.153 3.847 16 C -0.141 4.141 17 O -0.539 6.539 18 C -0.124 4.124 19 S -0.057 6.057 20 C -0.078 4.078 21 C -0.155 4.155 22 C -0.067 4.067 23 C -0.159 4.159 24 C 0.103 3.897 25 F -0.143 7.143 26 C -0.147 4.147 27 H 0.016 0.984 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.266 0.734 31 H 0.408 0.592 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.395 0.605 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -2.992 21.966 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.339 5.339 13 C 0.265 3.735 14 O -0.469 6.469 15 C 0.107 3.893 16 C -0.198 4.198 17 O -0.346 6.346 18 C -0.273 4.273 19 S 0.189 5.811 20 C -0.191 4.191 21 C -0.179 4.179 22 C -0.087 4.087 23 C -0.181 4.181 24 C 0.083 3.917 25 F -0.121 7.121 26 C -0.172 4.172 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.177 0.823 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.571 -3.197 21.809 22.191 hybrid contribution -1.241 0.778 -0.895 1.716 sum 1.330 -2.419 20.914 21.095 Atomic orbital electron populations 1.21892 0.97945 0.99627 0.99770 1.18402 0.91334 0.91919 0.81759 0.98142 1.21555 1.32528 1.13499 0.90825 0.91072 1.25759 0.94881 0.95576 1.02238 1.70040 1.36967 1.23838 1.24581 0.85325 0.78119 0.78541 0.78537 1.18507 1.20419 1.20978 1.46271 1.63688 1.14497 1.09402 1.21639 0.78161 0.87449 0.86273 1.90660 1.52482 1.17793 1.85937 1.20873 0.97448 0.82439 0.88525 1.21844 0.89221 1.03981 1.04775 1.86585 1.28740 1.22792 1.96506 1.24224 1.04602 1.04127 0.94367 1.85532 1.58575 1.42215 0.94732 1.21879 1.00581 0.99604 0.97075 1.21512 0.98932 0.96383 1.01076 1.21263 0.97819 0.98734 0.90849 1.21456 0.99506 0.98058 0.99044 1.17692 0.98621 0.97297 0.78137 1.91497 1.91690 1.93073 1.35863 1.20736 1.03672 1.02516 0.90245 0.96535 0.93935 0.91525 0.92522 0.75673 0.90214 0.88603 0.90765 0.75481 0.87842 0.88127 0.84973 0.82071 0.82284 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 9.26 71.98 0.67 -5.78 16 2 C 0.27 13.40 2.56 44.25 0.11 13.52 16 3 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 4 C -0.55 -28.18 8.73 25.60 0.22 -27.96 16 5 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.97 41.30 29.54 68.60 2.03 43.32 16 9 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 N -0.69 -27.05 4.98 -446.10 -2.22 -29.27 16 13 C 0.48 17.45 6.66 87.66 0.58 18.04 16 14 O -0.59 -26.00 15.65 -3.02 -0.05 -26.05 16 15 C 0.15 3.97 1.00 -11.54 -0.01 3.96 16 16 C -0.14 -3.38 8.51 71.98 0.61 -2.76 16 17 O -0.54 -12.18 12.05 -148.98 -1.79 -13.98 16 18 C -0.12 -2.87 3.19 71.98 0.23 -2.64 16 19 S -0.06 -1.17 19.96 -56.49 -1.13 -2.30 16 20 C -0.08 -1.60 6.11 22.62 0.14 -1.46 16 21 C -0.15 -2.94 9.36 22.42 0.21 -2.73 16 22 C -0.07 -1.02 10.04 22.24 0.22 -0.79 16 23 C -0.16 -2.43 10.02 22.35 0.22 -2.20 16 24 C 0.10 1.93 7.30 22.36 0.16 2.09 16 25 F -0.14 -2.81 17.27 44.97 0.78 -2.03 16 26 C -0.15 -2.86 9.77 22.45 0.22 -2.64 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 3.57 6.07 -2.38 -0.01 3.55 16 30 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.41 14.06 7.98 -92.71 -0.74 13.32 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 2.00 6.72 -2.38 -0.02 1.99 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.39 6.87 9.04 -74.06 -0.67 6.20 16 36 H 0.10 2.62 7.28 -2.39 -0.02 2.60 16 37 H 0.10 2.19 7.76 -2.39 -0.02 2.17 16 38 H 0.13 2.50 5.88 -2.91 -0.02 2.49 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -64.15 360.98 1.57 -62.58 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.33 Total: 28.91 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 4.04 Total: -10.09 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.98 Total: -80.36 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.84 Total: -40.03 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: -1.17 SS G_CDS: -1.13 Total: -2.30 kcal Total: -64.15 1.57 -62.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285301244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.939 kcal (2) G-P(sol) polarization free energy of solvation -64.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds