Wall clock time and date at job start Tue Mar 31 2020 15:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21281 * 119.99806 * 359.97438 * 13 12 2 15 15 C 1.50700 * 120.00091 * 180.02562 * 13 12 2 16 16 C 1.52998 * 109.47014 * 274.99367 * 15 13 12 17 17 O 1.42897 * 109.47223 * 34.99562 * 15 13 12 18 18 C 1.53004 * 109.46902 * 154.99561 * 15 13 12 19 19 S 1.81407 * 109.46748 * 174.99786 * 18 15 13 20 20 C 1.76195 * 102.99615 * 179.97438 * 19 18 15 21 21 C 1.39013 * 120.07197 * 359.72083 * 20 19 18 22 22 C 1.38071 * 119.97209 * 179.76404 * 21 20 19 23 23 C 1.38288 * 120.10253 * 0.51597 * 22 21 20 24 24 C 1.38511 * 120.13584 * 359.74283 * 23 22 21 25 25 F 1.35103 * 119.98347 * 180.02562 * 24 23 22 26 26 C 1.38323 * 120.02871 * 359.97438 * 24 23 22 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 32 32 H 1.08999 * 109.47304 * 59.99688 * 16 15 13 33 33 H 1.09001 * 109.47590 * 180.02562 * 16 15 13 34 34 H 1.09007 * 109.47158 * 300.00671 * 16 15 13 35 35 H 0.96696 * 114.00380 * 60.00013 * 17 15 13 36 36 H 1.08993 * 109.46948 * 294.99549 * 18 15 13 37 37 H 1.08996 * 109.46962 * 55.00160 * 18 15 13 38 38 H 1.08004 * 120.01344 * 0.02562 * 21 20 19 39 39 H 1.08001 * 119.94744 * 180.23236 * 22 21 20 40 40 H 1.08000 * 119.92926 * 179.75716 * 23 22 21 41 41 H 1.07996 * 120.04999 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6499 -0.7286 3.5874 16 6 1.4810 -1.4232 4.2889 17 8 3.6255 -1.7022 3.2100 18 6 3.2849 0.2873 4.5391 19 16 3.7568 -0.5422 6.0818 20 6 4.4584 0.7631 7.0350 21 6 4.5304 2.0482 6.5098 22 6 5.0762 3.0705 7.2604 23 6 5.5612 2.8160 8.5302 24 6 5.4965 1.5361 9.0557 25 9 5.9708 1.2910 10.2967 26 6 4.9456 0.5090 8.3108 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7011 1.1560 -3.4844 31 1 2.2489 -1.6318 1.1525 32 1 1.0286 -2.1469 3.6109 33 1 1.8446 -1.9366 5.1790 34 1 0.7368 -0.6805 4.5767 35 1 4.3966 -1.3320 2.7590 36 1 4.1708 0.7179 4.0724 37 1 2.5677 1.0787 4.7568 38 1 4.1558 2.2477 5.5167 39 1 5.1285 4.0695 6.8534 40 1 5.9911 3.6169 9.1133 41 1 4.8946 -0.4890 8.7204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285301246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:00 Heat of formation + Delta-G solvation = -113.532977 kcal Electronic energy + Delta-G solvation = -24823.150668 eV Core-core repulsion = 20936.543679 eV Total energy + Delta-G solvation = -3886.606990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.19126 -39.82181 -39.05324 -36.89857 -34.99837 -32.44862 -32.21978 -31.50655 -30.87203 -29.03312 -27.63930 -25.33440 -23.82221 -23.36377 -22.80099 -20.74543 -19.56461 -18.58617 -18.36213 -16.78552 -16.69626 -16.29444 -15.90030 -15.83095 -15.66025 -15.42924 -15.14921 -14.65454 -14.20775 -14.03303 -13.80928 -13.58480 -13.22948 -13.01838 -12.58414 -12.50951 -12.46519 -12.22845 -12.07581 -11.84406 -11.73911 -11.52938 -11.16193 -11.02059 -10.92087 -10.79791 -10.39393 -10.31297 -10.29735 -10.07574 -9.15684 -9.15119 -8.98967 -8.62248 -8.06173 -7.63859 -6.19104 -4.28944 0.72553 0.85247 1.15515 2.13352 3.05126 3.18810 3.21722 3.27208 3.28290 3.78092 3.96749 4.08568 4.30035 4.43286 4.44765 4.63947 4.65428 4.74678 5.02061 5.13069 5.22959 5.23663 5.33632 5.44659 5.64432 5.69701 5.72275 5.75691 5.82870 5.97880 6.08663 6.49485 6.72727 6.86732 7.04769 7.28438 7.33723 7.49862 7.61980 7.81489 8.06178 8.51402 8.66598 8.93815 9.38560 10.86707 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.002369 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.546353 B =11815.793612 C =12064.967424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.692 5.692 13 C 0.482 3.518 14 O -0.550 6.550 15 C 0.135 3.865 16 C -0.139 4.139 17 O -0.542 6.542 18 C -0.128 4.128 19 S -0.067 6.067 20 C -0.063 4.063 21 C -0.145 4.145 22 C -0.068 4.068 23 C -0.165 4.165 24 C 0.116 3.884 25 F -0.138 7.138 26 C -0.140 4.140 27 H 0.027 0.973 28 H 0.014 0.986 29 H 0.091 0.909 30 H 0.266 0.734 31 H 0.396 0.604 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.384 0.616 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -0.320 19.394 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.339 5.339 13 C 0.263 3.737 14 O -0.430 6.430 15 C 0.089 3.911 16 C -0.197 4.197 17 O -0.348 6.348 18 C -0.277 4.277 19 S 0.180 5.820 20 C -0.176 4.176 21 C -0.169 4.169 22 C -0.088 4.088 23 C -0.187 4.187 24 C 0.095 3.905 25 F -0.117 7.117 26 C -0.165 4.165 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.108 -1.015 19.734 20.682 hybrid contribution 1.080 0.909 -1.244 1.881 sum 7.187 -0.105 18.490 19.838 Atomic orbital electron populations 1.22085 0.98292 0.99272 1.00992 1.18810 0.91179 0.93928 0.79905 0.93368 1.21167 1.32638 1.13404 0.90213 0.92001 1.24892 0.94728 0.94949 0.99107 1.69888 1.35643 1.22433 1.24102 0.86485 0.79157 0.79650 0.81680 1.20083 1.21111 1.20141 1.46538 1.63320 1.14090 1.10000 1.20807 0.80097 0.87573 0.85272 1.90679 1.51738 1.15762 1.84806 1.21151 0.90185 0.87905 0.91827 1.21792 0.95429 1.01482 1.00962 1.86573 1.33336 1.35023 1.79877 1.24373 1.05281 1.02308 0.95696 1.85654 1.72542 1.11804 1.12019 1.21831 1.00953 0.97698 0.97165 1.21378 1.02514 0.91851 1.01205 1.20958 0.95485 0.99390 0.92969 1.21152 1.04434 0.95581 0.97490 1.17517 0.98327 0.94101 0.80585 1.91510 1.86062 1.95065 1.39052 1.20634 1.02527 0.99543 0.93801 0.95336 0.96653 0.89003 0.92446 0.77042 0.90617 0.90236 0.90156 0.76778 0.88629 0.86890 0.84817 0.84551 0.84598 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.43 2.56 -69.09 -0.18 6.26 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 4 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.29 11.31 55.43 0.63 -23.66 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 12 N -0.69 -13.60 4.98 -54.93 -0.27 -13.87 16 13 C 0.48 8.74 6.66 -10.98 -0.07 8.66 16 14 O -0.55 -11.93 15.65 5.56 0.09 -11.85 16 15 C 0.14 1.82 1.00 -91.77 -0.09 1.73 16 16 C -0.14 -1.72 8.51 37.16 0.32 -1.41 16 17 O -0.54 -6.74 12.05 -35.23 -0.42 -7.17 16 18 C -0.13 -1.54 3.19 37.16 0.12 -1.42 16 19 S -0.07 -0.74 19.96 -107.50 -2.15 -2.89 16 20 C -0.06 -0.69 6.11 -39.04 -0.24 -0.93 16 21 C -0.15 -1.49 9.36 -39.36 -0.37 -1.85 16 22 C -0.07 -0.60 10.04 -39.62 -0.40 -0.99 16 23 C -0.16 -1.45 10.02 -39.46 -0.40 -1.85 16 24 C 0.12 1.17 7.30 -39.45 -0.29 0.88 16 25 F -0.14 -1.46 17.27 2.25 0.04 -1.42 16 26 C -0.14 -1.45 9.77 -39.30 -0.38 -1.84 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.40 7.02 7.98 -40.82 -0.33 6.70 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.89 6.72 -51.93 -0.35 0.54 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.38 3.89 9.04 45.56 0.41 4.30 16 36 H 0.10 1.11 7.73 -51.93 -0.40 0.70 16 37 H 0.11 1.45 7.30 -51.93 -0.38 1.07 16 38 H 0.13 1.34 5.88 -52.48 -0.31 1.03 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -29.55 360.96 -8.26 -37.82 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.56 Total: 10.79 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.03 Total: -8.37 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.35 Total: -37.53 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.34 Total: -19.02 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.15 Total: -2.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.55 -8.26 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285301246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.715 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds