Wall clock time and date at job start Tue Mar 31 2020 14:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47376 * 2 1 4 4 C 1.52998 * 109.46671 * 239.99690 * 2 1 3 5 5 S 1.81393 * 109.47169 * 55.00494 * 4 2 1 6 6 C 1.76200 * 103.00116 * 180.02562 * 5 4 2 7 7 C 1.39018 * 120.06562 * 359.71648 * 6 5 4 8 8 C 1.38073 * 119.96869 * 180.23380 * 7 6 5 9 9 C 1.38283 * 120.10560 * 0.06806 * 8 7 6 10 10 C 1.38516 * 120.13543 * 359.95694 * 9 8 7 11 11 F 1.35098 * 119.98293 * 180.02562 * 10 9 8 12 12 C 1.38316 * 120.02910 * 0.02562 * 10 9 8 13 13 C 1.50706 * 109.46903 * 119.99821 * 2 1 3 14 14 O 1.21285 * 119.99756 * 94.99707 * 13 2 1 15 15 N 1.34767 * 120.00162 * 274.99583 * 13 2 1 16 16 C 1.46503 * 120.00253 * 180.02562 * 15 13 2 17 17 C 1.52995 * 109.47273 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.47182 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99610 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99941 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00054 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99632 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46875 * 90.00295 * 22 20 18 24 24 H 1.48497 * 109.47087 * 210.00120 * 22 20 18 25 25 H 1.48495 * 109.47518 * 330.00190 * 22 20 18 26 26 H 1.08997 * 109.47554 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46563 * 300.00372 * 1 2 3 28 28 H 1.08994 * 109.47124 * 59.99810 * 1 2 3 29 29 H 0.96699 * 113.99509 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47545 * 294.99867 * 4 2 1 31 31 H 1.09004 * 109.46817 * 175.00313 * 4 2 1 32 32 H 1.07998 * 120.01148 * 0.26301 * 7 6 5 33 33 H 1.07999 * 119.94336 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.93231 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.05469 * 180.02562 * 12 10 9 36 36 H 0.96997 * 120.00121 * 0.02562 * 15 13 2 37 37 H 1.08998 * 109.46609 * 300.00018 * 16 15 13 38 38 H 1.08997 * 109.47136 * 59.99900 * 16 15 13 39 39 H 1.08998 * 109.47217 * 299.99523 * 17 16 15 40 40 H 1.08997 * 109.47220 * 59.99830 * 17 16 15 41 41 H 0.97005 * 119.99808 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2492 5 16 1.3167 0.0434 -2.7265 6 6 2.0069 -0.9044 -4.0418 7 6 2.8855 -1.9453 -3.7637 8 6 3.4289 -2.6836 -4.7962 9 6 3.1018 -2.3885 -6.1069 10 6 2.2273 -1.3520 -6.3890 11 9 1.9095 -1.0667 -7.6707 12 6 1.6794 -0.6090 -5.3591 13 6 2.0323 -0.7104 1.2305 14 8 2.3207 -1.8872 1.1761 15 7 2.1611 -0.0381 2.3914 16 6 2.6499 -0.7285 3.5875 17 6 2.7008 0.2544 4.7588 18 6 3.2030 -0.4560 5.9894 19 1 3.4606 -1.5037 5.9407 20 6 3.3346 0.2319 7.1771 21 7 3.0214 1.5078 7.2362 22 14 3.9579 -0.6486 8.7021 23 1 5.4378 -0.5432 8.7644 24 1 3.3657 -0.0229 9.9116 25 1 3.5656 -2.0795 8.6427 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.9704 1.4235 -0.0004 30 1 1.7516 -1.7716 -1.2056 31 1 3.1263 -0.6445 -1.2951 32 1 3.1424 -2.1765 -2.7405 33 1 4.1111 -3.4924 -4.5796 34 1 3.5289 -2.9676 -6.9124 35 1 0.9971 0.1990 -5.5785 36 1 1.9302 0.9030 2.4351 37 1 1.9776 -1.5507 3.8326 38 1 3.6492 -1.1204 3.3979 39 1 3.3728 1.0769 4.5140 40 1 1.7013 0.6459 4.9483 41 1 3.1144 1.9918 8.0717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286151643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:57 Heat of formation + Delta-G solvation = -119.634708 kcal Electronic energy + Delta-G solvation = -24188.791805 eV Core-core repulsion = 20301.920225 eV Total energy + Delta-G solvation = -3886.871581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.27015 -40.16410 -39.15152 -37.15830 -35.10776 -32.90965 -32.45774 -31.60431 -30.98838 -29.75570 -27.84320 -25.31724 -23.70392 -23.23202 -22.75444 -21.02785 -20.10736 -18.71259 -18.33768 -16.81513 -16.78667 -16.50423 -16.15278 -15.98121 -15.82599 -15.61897 -15.31687 -14.63743 -14.62519 -14.33735 -14.09097 -13.71100 -13.52113 -13.36679 -13.00638 -12.68761 -12.63041 -12.38779 -12.36094 -12.18837 -12.00272 -11.68756 -11.29855 -11.12713 -11.08084 -10.70085 -10.45285 -10.42548 -10.18232 -9.84908 -9.49087 -9.24809 -9.21108 -8.68503 -8.45100 -7.75738 -6.14536 -4.18052 0.62693 0.75784 1.00908 1.99209 2.63111 3.09150 3.25506 3.31282 3.33752 3.40344 3.84094 3.88007 4.21913 4.33674 4.36336 4.42858 4.56614 4.63100 4.81905 4.92436 5.11958 5.13192 5.22455 5.24931 5.52776 5.55049 5.55421 5.61666 5.72929 5.87652 5.92675 6.19074 6.21693 6.40024 6.60866 6.72876 7.16176 7.44079 7.53350 7.80846 7.84222 8.18905 8.39582 8.87631 9.47116 10.96840 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.001982 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.269364 B =14123.471190 C =14644.167178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.137 3.863 3 O -0.539 6.539 4 C -0.131 4.131 5 S -0.063 6.063 6 C -0.064 4.064 7 C -0.146 4.146 8 C -0.068 4.068 9 C -0.164 4.164 10 C 0.117 3.883 11 F -0.137 7.137 12 C -0.139 4.139 13 C 0.485 3.515 14 O -0.545 6.545 15 N -0.706 5.706 16 C 0.119 3.881 17 C 0.013 3.987 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.384 0.616 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.405 0.595 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 -3.350 -25.507 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.092 3.908 3 O -0.345 6.345 4 C -0.280 4.280 5 S 0.184 5.816 6 C -0.178 4.178 7 C -0.170 4.170 8 C -0.088 4.088 9 C -0.185 4.185 10 C 0.096 3.904 11 F -0.116 7.116 12 C -0.164 4.164 13 C 0.267 3.733 14 O -0.424 6.424 15 N -0.356 5.356 16 C -0.003 4.003 17 C -0.025 4.025 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.233 0.767 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.682 -2.908 -25.349 25.780 hybrid contribution 1.759 -1.143 0.716 2.216 sum -1.923 -4.051 -24.634 25.039 Atomic orbital electron populations 1.21828 0.89759 1.03881 1.04445 1.21097 0.97234 0.82466 0.90050 1.86622 1.27613 1.23633 1.96659 1.24364 1.04308 1.04819 0.94473 1.85705 1.58480 1.42202 0.95203 1.21817 0.99808 0.99051 0.97089 1.21350 0.98758 0.96374 1.00515 1.20954 0.98020 0.98517 0.91312 1.21168 1.00373 0.98697 0.98309 1.17519 0.97872 0.96629 0.78399 1.91514 1.91527 1.92945 1.35612 1.20641 1.03393 1.02138 0.90246 1.20957 0.79105 0.87761 0.85467 1.90700 1.50439 1.15827 1.85404 1.46331 1.64613 1.14708 1.09919 1.21815 0.98142 0.96804 0.83514 1.19327 0.98015 0.94191 0.90950 1.21023 1.44566 0.96635 0.94017 0.92269 1.25002 0.95271 0.94901 0.99112 1.69951 1.48026 1.08172 1.26932 0.86504 0.78995 0.79829 0.82181 1.20544 1.21120 1.19743 0.90007 0.90420 0.89888 0.76711 0.86833 0.88571 0.84914 0.84539 0.84536 0.84208 0.75994 0.92351 0.92397 0.95856 0.95832 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.51 37.16 0.32 -1.17 16 2 C 0.14 1.55 1.00 -91.77 -0.09 1.45 16 3 O -0.54 -5.62 12.05 -35.23 -0.42 -6.05 16 4 C -0.13 -1.31 3.19 37.16 0.12 -1.19 16 5 S -0.06 -0.60 19.96 -107.50 -2.15 -2.75 16 6 C -0.06 -0.62 6.11 -39.04 -0.24 -0.86 16 7 C -0.15 -1.29 9.36 -39.35 -0.37 -1.66 16 8 C -0.07 -0.52 10.04 -39.63 -0.40 -0.91 16 9 C -0.16 -1.28 10.02 -39.46 -0.40 -1.68 16 10 C 0.12 1.07 7.30 -39.45 -0.29 0.79 16 11 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 12 C -0.14 -1.30 9.77 -39.30 -0.38 -1.69 16 13 C 0.49 7.29 6.69 -10.99 -0.07 7.22 16 14 O -0.55 -9.92 15.99 5.55 0.09 -9.83 16 15 N -0.71 -11.41 5.47 -60.30 -0.33 -11.74 16 16 C 0.12 2.40 5.61 -4.04 -0.02 2.38 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 18 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 22 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.80 6.72 -51.93 -0.35 0.46 16 29 H 0.38 3.02 9.04 45.56 0.41 3.43 16 30 H 0.11 1.21 7.30 -51.92 -0.38 0.83 16 31 H 0.10 0.90 7.74 -51.92 -0.40 0.50 16 32 H 0.13 1.11 5.88 -52.49 -0.31 0.80 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.41 5.96 7.91 -40.82 -0.32 5.64 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -30.98 365.79 -8.62 -39.60 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -4.70 Total: 5.58 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.38 Total: -10.11 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.41 Total: -36.63 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.34 Total: -15.88 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.15 Total: -2.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.98 -8.62 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286151643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.038 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds