Wall clock time and date at job start Tue Mar 31 2020 14:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47376 * 2 1 4 4 C 1.52998 * 109.46671 * 239.99690 * 2 1 3 5 5 S 1.81393 * 109.47169 * 55.00494 * 4 2 1 6 6 C 1.76200 * 103.00116 * 180.02562 * 5 4 2 7 7 C 1.39018 * 120.06562 * 359.71648 * 6 5 4 8 8 C 1.38073 * 119.96869 * 180.23380 * 7 6 5 9 9 C 1.38283 * 120.10560 * 0.06806 * 8 7 6 10 10 C 1.38516 * 120.13543 * 359.95694 * 9 8 7 11 11 F 1.35098 * 119.98293 * 180.02562 * 10 9 8 12 12 C 1.38316 * 120.02910 * 0.02562 * 10 9 8 13 13 C 1.50706 * 109.46903 * 119.99821 * 2 1 3 14 14 O 1.21285 * 119.99756 * 94.99707 * 13 2 1 15 15 N 1.34767 * 120.00162 * 274.99583 * 13 2 1 16 16 C 1.46503 * 120.00253 * 180.02562 * 15 13 2 17 17 C 1.52995 * 109.47273 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.47182 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99610 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99941 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00054 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99632 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46875 * 90.00295 * 22 20 18 24 24 H 1.48497 * 109.47087 * 210.00120 * 22 20 18 25 25 H 1.48495 * 109.47518 * 330.00190 * 22 20 18 26 26 H 1.08997 * 109.47554 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46563 * 300.00372 * 1 2 3 28 28 H 1.08994 * 109.47124 * 59.99810 * 1 2 3 29 29 H 0.96699 * 113.99509 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47545 * 294.99867 * 4 2 1 31 31 H 1.09004 * 109.46817 * 175.00313 * 4 2 1 32 32 H 1.07998 * 120.01148 * 0.26301 * 7 6 5 33 33 H 1.07999 * 119.94336 * 180.02562 * 8 7 6 34 34 H 1.08003 * 119.93231 * 179.97438 * 9 8 7 35 35 H 1.08003 * 120.05469 * 180.02562 * 12 10 9 36 36 H 0.96997 * 120.00121 * 0.02562 * 15 13 2 37 37 H 1.08998 * 109.46609 * 300.00018 * 16 15 13 38 38 H 1.08997 * 109.47136 * 59.99900 * 16 15 13 39 39 H 1.08998 * 109.47217 * 299.99523 * 17 16 15 40 40 H 1.08997 * 109.47220 * 59.99830 * 17 16 15 41 41 H 0.97005 * 119.99808 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2492 5 16 1.3167 0.0434 -2.7265 6 6 2.0069 -0.9044 -4.0418 7 6 2.8855 -1.9453 -3.7637 8 6 3.4289 -2.6836 -4.7962 9 6 3.1018 -2.3885 -6.1069 10 6 2.2273 -1.3520 -6.3890 11 9 1.9095 -1.0667 -7.6707 12 6 1.6794 -0.6090 -5.3591 13 6 2.0323 -0.7104 1.2305 14 8 2.3207 -1.8872 1.1761 15 7 2.1611 -0.0381 2.3914 16 6 2.6499 -0.7285 3.5875 17 6 2.7008 0.2544 4.7588 18 6 3.2030 -0.4560 5.9894 19 1 3.4606 -1.5037 5.9407 20 6 3.3346 0.2319 7.1771 21 7 3.0214 1.5078 7.2362 22 14 3.9579 -0.6486 8.7021 23 1 5.4378 -0.5432 8.7644 24 1 3.3657 -0.0229 9.9116 25 1 3.5656 -2.0795 8.6427 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 2.9704 1.4235 -0.0004 30 1 1.7516 -1.7716 -1.2056 31 1 3.1263 -0.6445 -1.2951 32 1 3.1424 -2.1765 -2.7405 33 1 4.1111 -3.4924 -4.5796 34 1 3.5289 -2.9676 -6.9124 35 1 0.9971 0.1990 -5.5785 36 1 1.9302 0.9030 2.4351 37 1 1.9776 -1.5507 3.8326 38 1 3.6492 -1.1204 3.3979 39 1 3.3728 1.0769 4.5140 40 1 1.7013 0.6459 4.9483 41 1 3.1144 1.9918 8.0717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286151643.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:56 Heat of formation + Delta-G solvation = -139.617564 kcal Electronic energy + Delta-G solvation = -24189.658327 eV Core-core repulsion = 20301.920225 eV Total energy + Delta-G solvation = -3887.738102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.97936 -41.35386 -39.79256 -38.21404 -36.70390 -34.82928 -33.34950 -32.24109 -31.74985 -31.47010 -28.68255 -27.08022 -24.67930 -24.14364 -23.58572 -22.71133 -21.22974 -19.58284 -19.30611 -18.48735 -17.57026 -17.47815 -16.98948 -16.95659 -16.68568 -16.65342 -16.46847 -16.40355 -15.87824 -15.45588 -14.86807 -14.80800 -14.47252 -14.33105 -14.17087 -14.01632 -13.56996 -13.45587 -13.34593 -13.23456 -12.98024 -12.93188 -12.76436 -12.54128 -12.40369 -12.26075 -12.00164 -11.67841 -11.44532 -11.19905 -10.83835 -10.61331 -10.59335 -10.08931 -9.91706 -8.47902 -8.24484 -6.35110 -0.03270 0.10591 0.23914 1.24017 1.40159 1.41913 1.42203 1.53435 2.13441 2.42583 2.44586 2.98773 3.10377 3.22142 3.33156 3.55506 3.65323 3.72804 3.96247 4.00797 4.26060 4.29818 4.43270 4.45403 4.47293 4.52351 4.69414 4.73354 4.83587 4.93243 4.96455 5.09375 5.11109 5.23207 5.25924 5.45876 5.56762 5.77065 5.77315 6.14596 6.33003 6.60652 6.78394 7.10895 7.34359 8.87086 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032769 B = 0.001982 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.269364 B =14123.471190 C =14644.167178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.152 3.848 3 O -0.540 6.540 4 C -0.126 4.126 5 S -0.060 6.060 6 C -0.078 4.078 7 C -0.153 4.153 8 C -0.067 4.067 9 C -0.160 4.160 10 C 0.102 3.898 11 F -0.144 7.144 12 C -0.148 4.148 13 C 0.489 3.511 14 O -0.575 6.575 15 N -0.704 5.704 16 C 0.139 3.861 17 C 0.022 3.978 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.266 1.266 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.396 0.604 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.413 0.587 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.009 0.991 40 H 0.007 0.993 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 -4.123 -26.260 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.106 3.894 3 O -0.348 6.348 4 C -0.275 4.275 5 S 0.186 5.814 6 C -0.191 4.191 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.181 4.181 10 C 0.081 3.919 11 F -0.122 7.122 12 C -0.173 4.173 13 C 0.273 3.727 14 O -0.455 6.455 15 N -0.354 5.354 16 C 0.015 3.985 17 C -0.016 4.016 18 C -0.585 4.585 19 H 0.078 0.922 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.190 1.190 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.247 0.753 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.025 0.975 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.167 -3.669 -26.132 26.578 hybrid contribution 1.608 -0.903 0.871 2.040 sum -1.559 -4.572 -25.261 25.719 Atomic orbital electron populations 1.21881 0.89046 1.04279 1.04887 1.20894 0.97584 0.82468 0.88443 1.86621 1.28919 1.22817 1.96473 1.24253 1.04781 1.04291 0.94186 1.85637 1.58655 1.42199 0.94894 1.21874 1.00573 0.99676 0.96998 1.21522 0.98698 0.96358 1.01159 1.21272 0.97854 0.98714 0.90800 1.21463 0.99454 0.98066 0.99158 1.17715 0.98638 0.97378 0.78133 1.91497 1.91686 1.93086 1.35954 1.20739 1.03688 1.02486 0.90365 1.21615 0.77820 0.87391 0.85896 1.90685 1.51533 1.17342 1.85924 1.46139 1.64901 1.15042 1.09355 1.21289 0.97782 0.95547 0.83835 1.19137 0.96366 0.94288 0.91784 1.21460 1.44611 0.96979 0.95402 0.92192 1.25876 0.95422 0.95639 1.02337 1.70059 1.49014 1.09559 1.27867 0.85453 0.78601 0.78822 0.78224 1.19766 1.20671 1.19030 0.89706 0.90652 0.88783 0.75304 0.87368 0.87858 0.84614 0.81971 0.82394 0.83864 0.75034 0.93317 0.92987 0.97241 0.97476 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 71.98 0.61 -2.22 16 2 C 0.15 3.24 1.00 -11.54 -0.01 3.23 16 3 O -0.54 -10.44 12.05 -148.98 -1.79 -12.24 16 4 C -0.13 -2.38 3.19 71.98 0.23 -2.15 16 5 S -0.06 -1.08 19.96 -56.49 -1.13 -2.21 16 6 C -0.08 -1.42 6.11 22.62 0.14 -1.28 16 7 C -0.15 -2.48 9.36 22.42 0.21 -2.27 16 8 C -0.07 -0.87 10.04 22.24 0.22 -0.64 16 9 C -0.16 -2.18 10.02 22.35 0.22 -1.96 16 10 C 0.10 1.77 7.30 22.35 0.16 1.93 16 11 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 12 C -0.15 -2.65 9.77 22.45 0.22 -2.43 16 13 C 0.49 14.35 6.69 87.66 0.59 14.93 16 14 O -0.57 -20.61 15.99 -3.05 -0.05 -20.66 16 15 N -0.70 -22.54 5.47 -463.07 -2.53 -25.07 16 16 C 0.14 5.63 5.61 86.38 0.48 6.11 16 17 C 0.02 1.06 5.09 29.85 0.15 1.21 16 18 C -0.55 -29.74 9.11 25.60 0.23 -29.50 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 20 C 0.01 0.34 5.46 84.66 0.46 0.80 16 21 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 22 Si 0.96 42.83 29.54 68.60 2.03 44.86 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.09 1.68 6.72 -2.39 -0.02 1.66 16 29 H 0.40 5.57 9.04 -74.06 -0.67 4.90 16 30 H 0.11 2.19 7.30 -2.39 -0.02 2.17 16 31 H 0.10 1.79 7.74 -2.39 -0.02 1.77 16 32 H 0.14 2.07 5.88 -2.91 -0.02 2.05 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.41 12.00 7.91 -92.71 -0.73 11.26 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -65.50 365.79 1.18 -64.32 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -0.33 Total: 20.38 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.93 Total: -14.24 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -2.25 Total: -78.31 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.84 Total: -32.90 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -1.13 Total: -2.21 kcal Total: -65.50 1.18 -64.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286151643.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.300 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds