Wall clock time and date at job start Tue Mar 31 2020 14:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.52997 * 109.47269 * 119.99603 * 2 1 3 5 5 S 1.81406 * 109.46873 * 305.00423 * 4 2 1 6 6 C 1.76207 * 102.99534 * 179.97438 * 5 4 2 7 7 C 1.39003 * 120.07031 * 359.72298 * 6 5 4 8 8 C 1.38074 * 119.96919 * 179.76870 * 7 6 5 9 9 C 1.38283 * 120.10719 * 0.50728 * 8 7 6 10 10 C 1.38516 * 120.13382 * 359.75056 * 9 8 7 11 11 F 1.35100 * 119.98653 * 180.02562 * 10 9 8 12 12 C 1.38328 * 120.02451 * 359.97438 * 10 9 8 13 13 C 1.50698 * 109.47150 * 239.99980 * 2 1 3 14 14 O 1.21279 * 119.99881 * 264.99309 * 13 2 1 15 15 N 1.34778 * 120.00078 * 85.00012 * 13 2 1 16 16 C 1.46503 * 119.99624 * 179.97438 * 15 13 2 17 17 C 1.53005 * 109.46517 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46828 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99628 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00232 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00345 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46904 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47125 * 119.99951 * 22 20 18 25 25 H 1.48497 * 109.46851 * 240.00160 * 22 20 18 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 0.96696 * 114.00036 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47278 * 65.00057 * 4 2 1 31 31 H 1.08994 * 109.47510 * 185.00566 * 4 2 1 32 32 H 1.08000 * 120.01500 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.94623 * 180.23318 * 8 7 6 34 34 H 1.07992 * 119.93659 * 179.76574 * 9 8 7 35 35 H 1.08001 * 120.04882 * 180.02562 * 12 10 9 36 36 H 0.97001 * 119.99790 * 0.02562 * 15 13 2 37 37 H 1.08994 * 109.47184 * 299.99581 * 16 15 13 38 38 H 1.09002 * 109.46752 * 60.00409 * 16 15 13 39 39 H 1.08995 * 109.47532 * 300.00172 * 17 16 15 40 40 H 1.08999 * 109.47306 * 60.00319 * 17 16 15 41 41 H 0.97001 * 120.00649 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 1.3166 0.0437 2.7266 6 6 2.0071 -0.9040 4.0419 7 6 2.8766 -1.9521 3.7633 8 6 3.4202 -2.6902 4.7958 9 6 3.0929 -2.3954 6.1066 10 6 2.2226 -1.3554 6.3889 11 9 1.9053 -1.0696 7.6706 12 6 1.6793 -0.6086 5.3591 13 6 2.0323 -0.7104 -1.2304 14 8 2.3209 -1.8871 -1.1759 15 7 2.1611 -0.0381 -2.3914 16 6 2.6499 -0.7286 -3.5874 17 6 2.7007 0.2543 -4.7588 18 6 3.2030 -0.4561 -5.9893 19 1 3.4599 -1.5041 -5.9407 20 6 3.3346 0.2316 -7.1770 21 7 3.0222 1.5077 -7.2360 22 14 3.9565 -0.6492 -8.7024 23 1 4.2368 -2.0701 -8.3739 24 1 2.9250 -0.5813 -9.7684 25 1 5.2029 0.0036 -9.1773 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.9702 1.4238 0.0004 30 1 1.7517 -1.7714 1.2057 31 1 3.1263 -0.6442 1.2952 32 1 3.1295 -2.1867 2.7399 33 1 4.0988 -3.5021 4.5791 34 1 3.5167 -2.9769 6.9118 35 1 1.0010 0.2026 5.5788 36 1 1.9307 0.9032 -2.4349 37 1 3.6492 -1.1204 -3.3978 38 1 1.9777 -1.5509 -3.8324 39 1 1.7012 0.6458 -4.9483 40 1 3.3726 1.0769 -4.5141 41 1 3.1144 1.9916 -8.0717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286151645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:00 Heat of formation + Delta-G solvation = -119.661177 kcal Electronic energy + Delta-G solvation = -24188.840970 eV Core-core repulsion = 20301.968242 eV Total energy + Delta-G solvation = -3886.872728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.26968 -40.16475 -39.15216 -37.15850 -35.10798 -32.91066 -32.45815 -31.60470 -30.98814 -29.75548 -27.84332 -25.31874 -23.70407 -23.23252 -22.75508 -21.02927 -20.10725 -18.71252 -18.33791 -16.81477 -16.78679 -16.50674 -16.15292 -15.98128 -15.82735 -15.61849 -15.31843 -14.63579 -14.62478 -14.33663 -14.09056 -13.71134 -13.52259 -13.36647 -13.00693 -12.68746 -12.63095 -12.38753 -12.36697 -12.18792 -12.00410 -11.68750 -11.29277 -11.13534 -11.08756 -10.68711 -10.45297 -10.43501 -10.18233 -9.84758 -9.48554 -9.24754 -9.20403 -8.68674 -8.45494 -7.75783 -6.14791 -4.18260 0.62713 0.75746 1.00901 1.99158 2.63084 3.09143 3.24359 3.31340 3.34529 3.40618 3.84089 3.87962 4.21898 4.33683 4.36247 4.42909 4.56639 4.63091 4.81873 4.92419 5.11927 5.13193 5.22273 5.24927 5.52774 5.55032 5.55356 5.61672 5.72932 5.87655 5.92626 6.19024 6.21671 6.40013 6.60816 6.72859 7.16196 7.44151 7.53232 7.80797 7.84163 8.18772 8.39554 8.87715 9.47017 10.96644 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.001982 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.789382 B =14124.296923 C =14645.295190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.137 3.863 3 O -0.539 6.539 4 C -0.131 4.131 5 S -0.063 6.063 6 C -0.064 4.064 7 C -0.146 4.146 8 C -0.068 4.068 9 C -0.164 4.164 10 C 0.117 3.883 11 F -0.137 7.137 12 C -0.139 4.139 13 C 0.485 3.515 14 O -0.545 6.545 15 N -0.706 5.706 16 C 0.119 3.881 17 C 0.012 3.988 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.384 0.616 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.405 0.595 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -3.374 25.517 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.091 3.909 3 O -0.345 6.345 4 C -0.280 4.280 5 S 0.184 5.816 6 C -0.178 4.178 7 C -0.170 4.170 8 C -0.088 4.088 9 C -0.185 4.185 10 C 0.096 3.904 11 F -0.116 7.116 12 C -0.164 4.164 13 C 0.267 3.733 14 O -0.424 6.424 15 N -0.356 5.356 16 C -0.003 4.003 17 C -0.025 4.025 18 C -0.562 4.562 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.233 0.767 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.688 -2.936 25.364 25.798 hybrid contribution 1.746 -1.131 -0.722 2.202 sum -1.942 -4.067 24.641 25.050 Atomic orbital electron populations 1.21828 0.89760 1.03881 1.04444 1.21096 0.97235 0.82466 0.90053 1.86622 1.27617 1.23631 1.96660 1.24364 1.04308 1.04814 0.94468 1.85709 1.58401 1.42295 0.95206 1.21813 0.99854 0.99002 0.97085 1.21347 0.98872 0.96267 1.00512 1.20956 0.97974 0.98560 0.91311 1.21166 1.00404 0.98665 0.98312 1.17522 0.97906 0.96591 0.78399 1.91515 1.91525 1.92948 1.35610 1.20643 1.03404 1.02121 0.90253 1.20956 0.79104 0.87761 0.85465 1.90698 1.50429 1.15836 1.85399 1.46336 1.64631 1.14695 1.09920 1.21817 0.98143 0.96798 0.83514 1.19334 0.98020 0.94200 0.90966 1.21064 1.44456 0.96646 0.94000 0.92210 1.25004 0.95287 0.94893 0.99130 1.69961 1.48176 1.08159 1.26798 0.86452 0.78510 0.79883 0.82696 1.19601 1.20890 1.20908 0.90414 0.90009 0.89893 0.76712 0.86834 0.88568 0.84911 0.84537 0.84537 0.84210 0.75993 0.92393 0.92349 0.95833 0.95842 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.51 37.16 0.32 -1.17 16 2 C 0.14 1.54 1.00 -91.77 -0.09 1.45 16 3 O -0.54 -5.62 12.04 -35.23 -0.42 -6.05 16 4 C -0.13 -1.31 3.19 37.16 0.12 -1.19 16 5 S -0.06 -0.60 19.96 -107.50 -2.15 -2.75 16 6 C -0.06 -0.62 6.11 -39.05 -0.24 -0.86 16 7 C -0.15 -1.29 9.36 -39.36 -0.37 -1.66 16 8 C -0.07 -0.52 10.04 -39.62 -0.40 -0.91 16 9 C -0.16 -1.28 10.02 -39.46 -0.40 -1.68 16 10 C 0.12 1.07 7.30 -39.45 -0.29 0.79 16 11 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 12 C -0.14 -1.30 9.77 -39.30 -0.38 -1.69 16 13 C 0.49 7.29 6.69 -10.99 -0.07 7.22 16 14 O -0.54 -9.92 15.99 5.56 0.09 -9.83 16 15 N -0.71 -11.41 5.47 -60.29 -0.33 -11.74 16 16 C 0.12 2.40 5.61 -4.04 -0.02 2.38 16 17 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 18 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 22 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.80 6.72 -51.93 -0.35 0.45 16 29 H 0.38 3.02 9.04 45.56 0.41 3.43 16 30 H 0.11 1.21 7.28 -51.92 -0.38 0.83 16 31 H 0.10 0.90 7.76 -51.93 -0.40 0.50 16 32 H 0.13 1.11 5.88 -52.49 -0.31 0.80 16 33 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.41 5.96 7.91 -40.82 -0.32 5.64 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -31.01 365.79 -8.62 -39.63 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.70 Total: 5.55 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.38 Total: -10.11 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.41 Total: -36.63 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.34 Total: -15.88 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.15 Total: -2.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.01 -8.62 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286151645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.031 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds