Wall clock time and date at job start Tue Mar 31 2020 14:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.52997 * 109.47269 * 119.99603 * 2 1 3 5 5 S 1.81406 * 109.46873 * 305.00423 * 4 2 1 6 6 C 1.76207 * 102.99534 * 179.97438 * 5 4 2 7 7 C 1.39003 * 120.07031 * 359.72298 * 6 5 4 8 8 C 1.38074 * 119.96919 * 179.76870 * 7 6 5 9 9 C 1.38283 * 120.10719 * 0.50728 * 8 7 6 10 10 C 1.38516 * 120.13382 * 359.75056 * 9 8 7 11 11 F 1.35100 * 119.98653 * 180.02562 * 10 9 8 12 12 C 1.38328 * 120.02451 * 359.97438 * 10 9 8 13 13 C 1.50698 * 109.47150 * 239.99980 * 2 1 3 14 14 O 1.21279 * 119.99881 * 264.99309 * 13 2 1 15 15 N 1.34778 * 120.00078 * 85.00012 * 13 2 1 16 16 C 1.46503 * 119.99624 * 179.97438 * 15 13 2 17 17 C 1.53005 * 109.46517 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46828 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99628 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00232 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00345 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46904 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47125 * 119.99951 * 22 20 18 25 25 H 1.48497 * 109.46851 * 240.00160 * 22 20 18 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 29 29 H 0.96696 * 114.00036 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47278 * 65.00057 * 4 2 1 31 31 H 1.08994 * 109.47510 * 185.00566 * 4 2 1 32 32 H 1.08000 * 120.01500 * 359.97438 * 7 6 5 33 33 H 1.08004 * 119.94623 * 180.23318 * 8 7 6 34 34 H 1.07992 * 119.93659 * 179.76574 * 9 8 7 35 35 H 1.08001 * 120.04882 * 180.02562 * 12 10 9 36 36 H 0.97001 * 119.99790 * 0.02562 * 15 13 2 37 37 H 1.08994 * 109.47184 * 299.99581 * 16 15 13 38 38 H 1.09002 * 109.46752 * 60.00409 * 16 15 13 39 39 H 1.08995 * 109.47532 * 300.00172 * 17 16 15 40 40 H 1.08999 * 109.47306 * 60.00319 * 17 16 15 41 41 H 0.97001 * 120.00649 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 2.0400 -0.7211 1.2493 5 16 1.3166 0.0437 2.7266 6 6 2.0071 -0.9040 4.0419 7 6 2.8766 -1.9521 3.7633 8 6 3.4202 -2.6902 4.7958 9 6 3.0929 -2.3954 6.1066 10 6 2.2226 -1.3554 6.3889 11 9 1.9053 -1.0696 7.6706 12 6 1.6793 -0.6086 5.3591 13 6 2.0323 -0.7104 -1.2304 14 8 2.3209 -1.8871 -1.1759 15 7 2.1611 -0.0381 -2.3914 16 6 2.6499 -0.7286 -3.5874 17 6 2.7007 0.2543 -4.7588 18 6 3.2030 -0.4561 -5.9893 19 1 3.4599 -1.5041 -5.9407 20 6 3.3346 0.2316 -7.1770 21 7 3.0222 1.5077 -7.2360 22 14 3.9565 -0.6492 -8.7024 23 1 4.2368 -2.0701 -8.3739 24 1 2.9250 -0.5813 -9.7684 25 1 5.2029 0.0036 -9.1773 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.9702 1.4238 0.0004 30 1 1.7517 -1.7714 1.2057 31 1 3.1263 -0.6442 1.2952 32 1 3.1295 -2.1867 2.7399 33 1 4.0988 -3.5021 4.5791 34 1 3.5167 -2.9769 6.9118 35 1 1.0010 0.2026 5.5788 36 1 1.9307 0.9032 -2.4349 37 1 3.6492 -1.1204 -3.3978 38 1 1.9777 -1.5509 -3.8324 39 1 1.7012 0.6458 -4.9483 40 1 3.3726 1.0769 -4.5141 41 1 3.1144 1.9916 -8.0717 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286151645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:59 Heat of formation + Delta-G solvation = -139.673994 kcal Electronic energy + Delta-G solvation = -24189.708791 eV Core-core repulsion = 20301.968242 eV Total energy + Delta-G solvation = -3887.740549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.97878 -41.35426 -39.79315 -38.21393 -36.70434 -34.83060 -33.34965 -32.24145 -31.74962 -31.47002 -28.68244 -27.08235 -24.68028 -24.14357 -23.58607 -22.71240 -21.22935 -19.58291 -19.30607 -18.49161 -17.57026 -17.47763 -16.99102 -16.95600 -16.68568 -16.65427 -16.46637 -16.40337 -15.87807 -15.45620 -14.86857 -14.80802 -14.47460 -14.33632 -14.17142 -14.01686 -13.57038 -13.45565 -13.34465 -13.22881 -12.98576 -12.94361 -12.76554 -12.52887 -12.40410 -12.27142 -12.00208 -11.68060 -11.42614 -11.19903 -10.83802 -10.62131 -10.59348 -10.08912 -9.91681 -8.47936 -8.24803 -6.35372 -0.03243 0.10560 0.23922 1.23982 1.40037 1.40773 1.41982 1.54476 2.13430 2.42410 2.44585 2.98789 3.10114 3.22106 3.33168 3.55545 3.65350 3.72821 3.96248 4.00810 4.26059 4.29823 4.43284 4.45360 4.47294 4.52362 4.69459 4.73297 4.83548 4.93240 4.96460 5.09365 5.11112 5.23221 5.25933 5.45950 5.56678 5.77060 5.77300 6.14465 6.33016 6.60667 6.78417 7.10900 7.34208 8.87009 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.001982 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.789382 B =14124.296923 C =14645.295190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.152 3.848 3 O -0.540 6.540 4 C -0.126 4.126 5 S -0.060 6.060 6 C -0.078 4.078 7 C -0.153 4.153 8 C -0.067 4.067 9 C -0.160 4.160 10 C 0.102 3.898 11 F -0.144 7.144 12 C -0.148 4.148 13 C 0.489 3.511 14 O -0.574 6.574 15 N -0.704 5.704 16 C 0.139 3.861 17 C 0.021 3.979 18 C -0.545 4.545 19 H 0.060 0.940 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.964 3.036 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.277 1.277 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.396 0.604 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.144 0.856 36 H 0.413 0.587 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.007 0.993 40 H 0.009 0.991 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 -4.139 26.266 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.106 3.894 3 O -0.348 6.348 4 C -0.275 4.275 5 S 0.186 5.814 6 C -0.191 4.191 7 C -0.177 4.177 8 C -0.086 4.086 9 C -0.181 4.181 10 C 0.081 3.919 11 F -0.122 7.122 12 C -0.173 4.173 13 C 0.273 3.727 14 O -0.455 6.455 15 N -0.354 5.354 16 C 0.015 3.985 17 C -0.016 4.016 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.193 4.193 21 N -0.565 5.565 22 Si 0.789 3.211 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.203 1.203 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.247 0.753 30 H 0.126 0.874 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.025 0.975 40 H 0.028 0.972 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.190 -3.689 26.141 26.592 hybrid contribution 1.600 -0.893 -0.877 2.031 sum -1.590 -4.582 25.263 25.725 Atomic orbital electron populations 1.21881 0.89046 1.04280 1.04885 1.20893 0.97585 0.82468 0.88445 1.86621 1.28923 1.22816 1.96473 1.24253 1.04777 1.04291 0.94181 1.85641 1.58577 1.42291 0.94895 1.21870 1.00622 0.99626 0.96995 1.21519 0.98813 0.96247 1.01156 1.21274 0.97801 0.98767 0.90799 1.21461 0.99478 0.98038 0.99159 1.17718 0.98674 0.97341 0.78134 1.91498 1.91684 1.93089 1.35951 1.20741 1.03695 1.02469 0.90372 1.21613 0.77820 0.87391 0.85893 1.90684 1.51522 1.17350 1.85918 1.46143 1.64920 1.15030 1.09355 1.21291 0.97778 0.95546 0.83837 1.19142 0.96373 0.94294 0.91792 1.21491 1.44516 0.96957 0.95394 0.92195 1.25876 0.95436 0.95631 1.02349 1.70063 1.49147 1.09547 1.27782 0.85401 0.78023 0.78926 0.78728 1.18871 1.20354 1.20304 0.90645 0.89705 0.88789 0.75305 0.87363 0.87860 0.84613 0.81970 0.82396 0.83866 0.75032 0.92998 0.93305 0.97469 0.97225 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 71.98 0.61 -2.22 16 2 C 0.15 3.24 1.00 -11.54 -0.01 3.23 16 3 O -0.54 -10.44 12.04 -148.98 -1.79 -12.24 16 4 C -0.13 -2.37 3.19 71.98 0.23 -2.14 16 5 S -0.06 -1.08 19.96 -56.49 -1.13 -2.21 16 6 C -0.08 -1.41 6.11 22.62 0.14 -1.28 16 7 C -0.15 -2.48 9.36 22.41 0.21 -2.27 16 8 C -0.07 -0.87 10.04 22.24 0.22 -0.64 16 9 C -0.16 -2.18 10.02 22.35 0.22 -1.96 16 10 C 0.10 1.77 7.30 22.36 0.16 1.93 16 11 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 12 C -0.15 -2.65 9.77 22.45 0.22 -2.43 16 13 C 0.49 14.34 6.69 87.66 0.59 14.93 16 14 O -0.57 -20.61 15.99 -3.03 -0.05 -20.66 16 15 N -0.70 -22.54 5.47 -463.05 -2.53 -25.07 16 16 C 0.14 5.63 5.61 86.38 0.48 6.11 16 17 C 0.02 1.05 5.09 29.85 0.15 1.20 16 18 C -0.55 -29.70 9.11 25.60 0.23 -29.46 16 19 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 20 C 0.01 0.33 5.46 84.65 0.46 0.79 16 21 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 22 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.09 1.67 6.72 -2.39 -0.02 1.66 16 29 H 0.40 5.57 9.04 -74.06 -0.67 4.90 16 30 H 0.11 2.19 7.28 -2.39 -0.02 2.17 16 31 H 0.10 1.79 7.76 -2.39 -0.02 1.77 16 32 H 0.14 2.07 5.88 -2.91 -0.02 2.06 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.41 11.99 7.91 -92.71 -0.73 11.26 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -65.56 365.79 1.18 -64.38 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -0.33 Total: 20.28 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 3.93 Total: -14.22 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.25 Total: -78.32 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.84 Total: -32.89 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -1.13 Total: -2.21 kcal Total: -65.56 1.18 -64.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286151645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.297 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds