Wall clock time and date at job start Tue Mar 31 2020 15:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47308 * 2 1 4 4 C 1.34775 * 117.00596 * 179.97438 * 3 2 1 5 5 O 1.21530 * 119.99197 * 359.97438 * 4 3 2 6 6 C 1.47252 * 120.00269 * 180.02562 * 4 3 2 7 7 C 1.39856 * 120.16788 * 355.03469 * 6 4 3 8 8 C 1.37828 * 119.91480 * 179.97438 * 7 6 4 9 9 F 1.35102 * 119.87241 * 180.02562 * 8 7 6 10 10 C 1.39056 * 120.26290 * 359.97438 * 8 7 6 11 11 F 1.35102 * 119.83000 * 180.02562 * 10 8 7 12 12 C 1.38278 * 120.34457 * 0.04323 * 10 8 7 13 13 C 1.38729 * 120.08355 * 359.69883 * 12 10 8 14 14 N 1.39341 * 120.13960 * 180.30207 * 13 12 10 15 15 C 1.34785 * 119.99467 * 34.95011 * 14 13 12 16 16 O 1.21278 * 120.00117 * 5.27895 * 15 14 13 17 17 C 1.50699 * 119.99735 * 185.27176 * 15 14 13 18 18 C 1.52992 * 109.47492 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47492 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00201 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99961 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00040 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46696 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47462 * 119.99879 * 23 21 19 26 26 H 1.48501 * 109.46969 * 240.00643 * 23 21 19 27 27 H 1.09000 * 109.47232 * 299.99802 * 1 2 3 28 28 H 1.08994 * 109.47188 * 60.00173 * 1 2 3 29 29 H 1.09005 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 120.00308 * 2 1 3 31 31 H 1.09000 * 109.47232 * 240.00198 * 2 1 3 32 32 H 1.07998 * 120.04531 * 359.95527 * 7 6 4 33 33 H 1.08006 * 119.96362 * 179.97438 * 12 10 8 34 34 H 0.96988 * 120.00313 * 214.95197 * 14 13 12 35 35 H 1.09006 * 109.47365 * 300.00377 * 17 15 14 36 36 H 1.09005 * 109.46777 * 59.99953 * 17 15 14 37 37 H 1.09006 * 109.46917 * 300.00398 * 18 17 15 38 38 H 1.09005 * 109.47354 * 60.00054 * 18 17 15 39 39 H 0.97003 * 119.99744 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0904 0.5818 0.0015 6 6 3.9130 2.9064 0.0011 7 6 3.0685 4.0162 -0.1035 8 6 3.6008 5.2876 -0.1019 9 9 2.7842 6.3591 -0.2025 10 6 4.9750 5.4718 0.0040 11 9 5.4874 6.7219 0.0052 12 6 5.8200 4.3821 0.1076 13 6 5.2992 3.0963 0.1128 14 7 6.1491 1.9976 0.2236 15 6 7.2596 2.0786 0.9831 16 8 7.4699 3.0724 1.6457 17 6 8.2397 0.9342 1.0092 18 6 9.4017 1.2790 1.9426 19 6 10.3821 0.1348 1.9682 20 1 10.1953 -0.7497 1.3774 21 6 11.5182 0.2177 2.7451 22 7 11.7460 1.2950 3.4642 23 14 12.7339 -1.2003 2.7762 24 1 12.2496 -2.2870 1.8875 25 1 14.0592 -0.7267 2.3028 26 1 12.8586 -1.7149 4.1636 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.0006 3.8774 -0.1858 33 1 6.8865 4.5323 0.1891 34 1 5.9415 1.1747 -0.2459 35 1 7.7392 0.0353 1.3693 36 1 8.6209 0.7594 0.0030 37 1 9.9023 2.1780 1.5829 38 1 9.0202 1.4535 2.9487 39 1 12.5454 1.3534 4.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291560981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:38 Heat of formation + Delta-G solvation = -190.202250 kcal Electronic energy + Delta-G solvation = -27110.454800 eV Core-core repulsion = 22654.310005 eV Total energy + Delta-G solvation = -4456.144795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.70526 -48.77028 -41.29246 -40.03174 -38.31491 -36.94340 -34.60587 -33.58065 -32.41917 -31.36995 -31.14923 -29.55190 -26.01257 -25.05833 -23.96506 -23.08283 -21.73749 -21.48021 -19.96857 -18.71507 -18.39265 -17.79339 -17.34752 -17.01322 -16.74737 -16.51642 -16.41546 -15.71317 -15.43487 -15.18354 -15.15866 -14.53166 -14.50285 -14.41251 -14.07381 -13.66036 -13.54562 -13.40311 -13.12525 -12.85690 -12.41950 -12.24724 -12.16587 -11.99307 -11.97349 -11.27058 -10.98994 -10.94881 -10.90981 -10.62917 -10.35779 -10.06019 -9.84022 -9.50389 -9.29832 -9.13853 -8.42565 -8.36037 -6.01302 -4.05952 0.03579 0.63939 2.00509 2.18924 2.74496 2.96410 3.22749 3.30224 3.37668 3.40855 3.46767 3.93663 4.11573 4.31935 4.43435 4.55698 4.57541 4.68090 4.82621 4.89663 5.15349 5.26380 5.27987 5.34190 5.34939 5.38434 5.54013 5.60372 5.72395 5.98187 6.07851 6.13190 6.16816 6.52726 6.74872 7.32534 7.48391 7.67630 7.75500 7.99050 8.24591 8.40087 9.01718 9.58178 11.09619 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.003119 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.751553 B = 8975.573981 C =11168.947471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.523 3.477 5 O -0.502 6.502 6 C -0.161 4.161 7 C -0.044 4.044 8 C 0.026 3.974 9 F -0.126 7.126 10 C 0.136 3.864 11 F -0.116 7.116 12 C -0.152 4.152 13 C 0.257 3.743 14 N -0.672 5.672 15 C 0.510 3.490 16 O -0.507 6.507 17 C -0.128 4.128 18 C 0.036 3.964 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.889 5.889 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.427 0.573 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.815 2.128 -10.699 26.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.268 6.268 4 C 0.369 3.631 5 O -0.392 6.392 6 C -0.166 4.166 7 C -0.064 4.064 8 C 0.005 3.995 9 F -0.105 7.105 10 C 0.114 3.886 11 F -0.094 7.094 12 C -0.173 4.173 13 C 0.157 3.843 14 N -0.323 5.323 15 C 0.301 3.699 16 O -0.379 6.379 17 C -0.167 4.167 18 C -0.002 4.002 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.527 5.527 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.271 0.729 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.252 2.582 -10.081 25.475 hybrid contribution 0.535 -0.797 -0.108 0.966 sum -22.718 1.786 -10.189 24.962 Atomic orbital electron populations 1.21822 0.92388 1.03192 1.03621 1.23117 0.95431 0.79436 1.03132 1.86530 1.23138 1.33005 1.84169 1.20580 0.80921 0.88858 0.72776 1.90729 1.59854 1.42190 1.46393 1.18616 0.91384 0.90885 1.15672 1.21054 1.01379 0.88660 0.95275 1.17296 0.86329 0.84579 1.11299 1.91543 1.71435 1.53392 1.94136 1.17702 0.89939 0.80637 1.00283 1.91581 1.87199 1.37539 1.93121 1.21075 1.02530 0.89086 1.04619 1.17429 0.87523 0.88336 0.91044 1.44483 1.23393 1.15072 1.49340 1.22104 0.80465 0.90570 0.76755 1.90707 1.74149 1.32923 1.40156 1.21950 0.96249 0.94475 1.04069 1.18948 0.90018 0.97240 0.93955 1.21217 1.05769 1.02371 1.27261 0.92409 1.25024 0.98055 0.95882 0.95402 1.70003 1.26989 1.27334 1.28418 0.86516 0.81120 0.82405 0.77817 1.19697 1.20984 1.20994 0.91346 0.91399 0.90015 0.90745 0.90813 0.81954 0.81266 0.72937 0.89403 0.89375 0.95629 0.95642 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.45 6.20 37.16 0.23 0.68 16 3 O -0.35 -3.29 9.48 -40.70 -0.39 -3.68 16 4 C 0.52 5.94 7.87 34.39 0.27 6.21 16 5 O -0.50 -6.58 13.67 -19.29 -0.26 -6.85 16 6 C -0.16 -1.83 5.89 -104.83 -0.62 -2.45 16 7 C -0.04 -0.42 9.58 -39.13 -0.37 -0.80 16 8 C 0.03 0.29 7.29 -39.43 -0.29 0.00 16 9 F -0.13 -1.43 17.17 2.25 0.04 -1.39 16 10 C 0.14 1.71 7.30 -39.26 -0.29 1.42 16 11 F -0.12 -1.55 17.17 2.25 0.04 -1.51 16 12 C -0.15 -2.09 8.61 -39.39 -0.34 -2.43 16 13 C 0.26 3.48 6.25 -83.47 -0.52 2.96 16 14 N -0.67 -9.82 4.70 -9.68 -0.05 -9.86 16 15 C 0.51 9.35 7.55 -10.98 -0.08 9.26 16 16 O -0.51 -10.93 13.77 5.56 0.08 -10.86 16 17 C -0.13 -2.49 5.64 -27.89 -0.16 -2.64 16 18 C 0.04 0.93 4.26 -27.89 -0.12 0.81 16 19 C -0.53 -14.64 9.11 -34.44 -0.31 -14.96 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 23 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.16 1.15 7.62 -52.49 -0.40 0.75 16 33 H 0.17 2.59 6.53 -52.48 -0.34 2.24 16 34 H 0.43 5.60 6.29 -40.82 -0.26 5.34 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.03 0.72 8.10 -51.93 -0.42 0.29 16 38 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -32.53 351.07 -6.19 -38.72 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.34 Total: 0.68 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.31 Total: -0.71 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.69 Total: -36.08 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.57 Total: -21.38 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.53 -6.19 -38.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291560981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.483 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds