Wall clock time and date at job start Tue Mar 31 2020 15:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47308 * 2 1 4 4 C 1.34775 * 117.00596 * 179.97438 * 3 2 1 5 5 O 1.21530 * 119.99197 * 359.97438 * 4 3 2 6 6 C 1.47252 * 120.00269 * 180.02562 * 4 3 2 7 7 C 1.39856 * 120.16788 * 355.03469 * 6 4 3 8 8 C 1.37828 * 119.91480 * 179.97438 * 7 6 4 9 9 F 1.35102 * 119.87241 * 180.02562 * 8 7 6 10 10 C 1.39056 * 120.26290 * 359.97438 * 8 7 6 11 11 F 1.35102 * 119.83000 * 180.02562 * 10 8 7 12 12 C 1.38278 * 120.34457 * 0.04323 * 10 8 7 13 13 C 1.38729 * 120.08355 * 359.69883 * 12 10 8 14 14 N 1.39341 * 120.13960 * 180.30207 * 13 12 10 15 15 C 1.34785 * 119.99467 * 34.95011 * 14 13 12 16 16 O 1.21278 * 120.00117 * 5.27895 * 15 14 13 17 17 C 1.50699 * 119.99735 * 185.27176 * 15 14 13 18 18 C 1.52992 * 109.47492 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47492 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00201 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99961 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00040 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46696 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47462 * 119.99879 * 23 21 19 26 26 H 1.48501 * 109.46969 * 240.00643 * 23 21 19 27 27 H 1.09000 * 109.47232 * 299.99802 * 1 2 3 28 28 H 1.08994 * 109.47188 * 60.00173 * 1 2 3 29 29 H 1.09005 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 120.00308 * 2 1 3 31 31 H 1.09000 * 109.47232 * 240.00198 * 2 1 3 32 32 H 1.07998 * 120.04531 * 359.95527 * 7 6 4 33 33 H 1.08006 * 119.96362 * 179.97438 * 12 10 8 34 34 H 0.96988 * 120.00313 * 214.95197 * 14 13 12 35 35 H 1.09006 * 109.47365 * 300.00377 * 17 15 14 36 36 H 1.09005 * 109.46777 * 59.99953 * 17 15 14 37 37 H 1.09006 * 109.46917 * 300.00398 * 18 17 15 38 38 H 1.09005 * 109.47354 * 60.00054 * 18 17 15 39 39 H 0.97003 * 119.99744 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3502 1.5456 0.0005 5 8 4.0904 0.5818 0.0015 6 6 3.9130 2.9064 0.0011 7 6 3.0685 4.0162 -0.1035 8 6 3.6008 5.2876 -0.1019 9 9 2.7842 6.3591 -0.2025 10 6 4.9750 5.4718 0.0040 11 9 5.4874 6.7219 0.0052 12 6 5.8200 4.3821 0.1076 13 6 5.2992 3.0963 0.1128 14 7 6.1491 1.9976 0.2236 15 6 7.2596 2.0786 0.9831 16 8 7.4699 3.0724 1.6457 17 6 8.2397 0.9342 1.0092 18 6 9.4017 1.2790 1.9426 19 6 10.3821 0.1348 1.9682 20 1 10.1953 -0.7497 1.3774 21 6 11.5182 0.2177 2.7451 22 7 11.7460 1.2950 3.4642 23 14 12.7339 -1.2003 2.7762 24 1 12.2496 -2.2870 1.8875 25 1 14.0592 -0.7267 2.3028 26 1 12.8586 -1.7149 4.1636 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 2.0006 3.8774 -0.1858 33 1 6.8865 4.5323 0.1891 34 1 5.9415 1.1747 -0.2459 35 1 7.7392 0.0353 1.3693 36 1 8.6209 0.7594 0.0030 37 1 9.9023 2.1780 1.5829 38 1 9.0202 1.4535 2.9487 39 1 12.5454 1.3534 4.0105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291560981.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:37 Heat of formation + Delta-G solvation = -209.209221 kcal Electronic energy + Delta-G solvation = -27111.279004 eV Core-core repulsion = 22654.310005 eV Total energy + Delta-G solvation = -4456.968999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.70129 -49.74808 -42.32780 -41.14490 -39.47058 -37.79279 -35.88575 -35.58785 -33.23671 -33.05395 -32.01516 -30.75474 -27.83533 -26.00309 -25.13049 -23.99118 -23.16641 -22.45414 -21.42536 -19.62745 -19.50451 -19.01660 -18.61771 -18.10416 -17.81669 -17.59927 -17.44341 -17.21087 -16.59549 -16.51299 -16.35295 -16.15582 -15.49521 -15.24166 -15.13353 -14.95111 -14.66266 -14.35508 -14.30195 -14.17210 -13.56356 -13.53090 -13.28752 -12.97192 -12.92201 -12.85602 -12.49179 -12.46710 -11.97331 -11.91082 -11.68895 -11.54763 -11.48754 -11.30604 -10.98038 -10.57887 -10.37239 -9.49343 -8.19090 -6.32464 -0.94409 -0.34287 1.05617 1.38535 1.41995 1.42737 1.43566 1.56789 1.75774 2.19094 2.42257 2.48341 2.97039 3.14659 3.16106 3.45289 3.60150 3.83266 3.99760 4.07223 4.10454 4.22271 4.39253 4.41238 4.45599 4.48163 4.55036 4.65409 4.85415 4.98610 4.99914 5.05673 5.14741 5.38177 5.41593 5.49695 5.60117 5.83425 6.15674 6.22050 6.48786 6.84088 6.97601 7.37715 8.93567 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.003119 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.751553 B = 8975.573981 C =11168.947471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.345 6.345 4 C 0.526 3.474 5 O -0.522 6.522 6 C -0.150 4.150 7 C -0.019 4.019 8 C 0.037 3.963 9 F -0.123 7.123 10 C 0.129 3.871 11 F -0.124 7.124 12 C -0.162 4.162 13 C 0.237 3.763 14 N -0.657 5.657 15 C 0.517 3.483 16 O -0.549 6.549 17 C -0.117 4.117 18 C 0.042 3.958 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.006 4.006 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.253 1.253 25 H -0.281 1.281 26 H -0.281 1.281 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.199 0.801 33 H 0.147 0.853 34 H 0.435 0.565 35 H 0.107 0.893 36 H 0.114 0.886 37 H -0.011 1.011 38 H -0.014 1.014 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.156 0.356 -12.056 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.261 6.261 4 C 0.372 3.628 5 O -0.412 6.412 6 C -0.154 4.154 7 C -0.038 4.038 8 C 0.016 3.984 9 F -0.102 7.102 10 C 0.107 3.893 11 F -0.102 7.102 12 C -0.183 4.183 13 C 0.138 3.862 14 N -0.308 5.308 15 C 0.307 3.693 16 O -0.426 6.426 17 C -0.157 4.157 18 C 0.004 3.996 19 C -0.580 4.580 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.796 3.204 24 H -0.177 1.177 25 H -0.206 1.206 26 H -0.207 1.207 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.216 0.784 33 H 0.165 0.835 34 H 0.281 0.719 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.008 0.992 38 H 0.004 0.996 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.660 0.798 -11.483 28.124 hybrid contribution 1.106 -0.193 0.286 1.159 sum -24.554 0.605 -11.197 26.993 Atomic orbital electron populations 1.21842 0.90249 1.04439 1.03923 1.23413 0.97052 0.78284 1.03166 1.86529 1.21608 1.34445 1.83511 1.20505 0.81587 0.88332 0.72355 1.90718 1.60500 1.42702 1.47330 1.18645 0.90422 0.91851 1.14520 1.21335 1.02686 0.87113 0.92709 1.17283 0.85466 0.85171 1.10440 1.91561 1.71129 1.53447 1.94014 1.17768 0.90661 0.80007 1.00828 1.91560 1.87480 1.37918 1.93264 1.20875 1.01758 0.89921 1.05756 1.17511 0.88337 0.87615 0.92785 1.44063 1.22378 1.15824 1.48533 1.21741 0.81214 0.89504 0.76799 1.90700 1.75346 1.34260 1.42258 1.21698 0.94666 0.95528 1.03802 1.18719 0.91981 0.95656 0.93245 1.21714 1.06052 1.03132 1.27085 0.90613 1.26096 1.00475 0.98820 0.94923 1.70172 1.27884 1.29967 1.29584 0.85296 0.78082 0.78917 0.78097 1.17674 1.20646 1.20724 0.91320 0.90777 0.88316 0.91249 0.90362 0.78433 0.83526 0.71898 0.87472 0.86837 0.99207 0.99554 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 71.98 0.74 -0.23 16 2 C 0.05 0.65 6.20 71.98 0.45 1.10 16 3 O -0.34 -5.44 9.48 -56.86 -0.54 -5.97 16 4 C 0.53 10.77 7.87 70.19 0.55 11.33 16 5 O -0.52 -12.77 13.67 19.74 0.27 -12.50 16 6 C -0.15 -3.13 5.89 -20.00 -0.12 -3.24 16 7 C -0.02 -0.32 9.58 22.56 0.22 -0.10 16 8 C 0.04 0.75 7.29 22.37 0.16 0.92 16 9 F -0.12 -2.48 17.17 44.97 0.77 -1.71 16 10 C 0.13 3.22 7.30 22.48 0.16 3.38 16 11 F -0.12 -3.36 17.17 44.97 0.77 -2.59 16 12 C -0.16 -4.58 8.61 22.40 0.19 -4.39 16 13 C 0.24 6.32 6.25 38.58 0.24 6.56 16 14 N -0.66 -19.08 4.70 -302.92 -1.42 -20.50 16 15 C 0.52 19.44 7.55 87.66 0.66 20.10 16 16 O -0.55 -25.11 13.77 -3.02 -0.04 -25.15 16 17 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 18 C 0.04 2.26 4.26 29.85 0.13 2.38 16 19 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 20 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 21 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 22 N -0.94 -58.68 13.29 21.45 0.28 -58.39 16 23 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 24 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.20 1.86 7.62 -2.91 -0.02 1.84 16 33 H 0.15 4.85 6.53 -2.91 -0.02 4.84 16 34 H 0.44 10.98 6.29 -92.72 -0.58 10.40 16 35 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 36 H 0.11 3.85 8.14 -2.38 -0.02 3.83 16 37 H -0.01 -0.64 8.10 -2.38 -0.02 -0.65 16 38 H -0.01 -0.86 8.10 -2.38 -0.02 -0.87 16 39 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -73.19 351.07 6.90 -66.29 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.53 Total: 11.11 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.25 Total: 3.40 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.14 Total: -78.90 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.31 Total: -43.62 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 1.54 Total: -4.30 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.19 6.90 -66.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291560981.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.920 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds