Wall clock time and date at job start Tue Mar 31 2020 14:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00485 * 2 1 4 4 N 1.46903 * 109.47110 * 124.45270 * 3 2 1 5 5 C 1.46892 * 111.00053 * 195.53121 * 4 3 2 6 6 C 1.50704 * 109.47070 * 66.04862 * 5 4 3 7 7 H 1.07991 * 119.99713 * 359.72676 * 6 5 4 8 8 C 1.37876 * 119.99915 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00172 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99992 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47344 * 59.99858 * 10 8 6 12 12 H 1.48496 * 109.47481 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47042 * 300.00326 * 10 8 6 14 14 C 1.37713 * 110.99575 * 71.57997 * 4 3 2 15 15 C 1.38156 * 120.64818 * 64.02180 * 14 4 3 16 16 C 1.39250 * 119.02330 * 179.77692 * 15 14 4 17 17 C 1.50699 * 119.79143 * 180.24617 * 16 15 14 18 18 F 1.39891 * 109.47577 * 185.25204 * 17 16 15 19 19 F 1.39894 * 109.47051 * 305.25900 * 17 16 15 20 20 F 1.39911 * 109.46571 * 65.25251 * 17 16 15 21 21 N 1.31660 * 120.43054 * 0.50329 * 16 15 14 22 22 C 1.33795 * 121.22135 * 359.74874 * 21 16 15 23 23 N 1.32858 * 132.41193 * 180.02562 * 22 21 16 24 24 C 1.32732 * 109.74192 * 179.97438 * 23 22 21 25 25 N 1.31068 * 109.62257 * 359.97438 * 24 23 22 26 26 N 1.36516 * 120.64284 * 244.29787 * 14 4 3 27 27 H 1.08001 * 119.99641 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.00414 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99723 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46725 * 4.45705 * 3 2 1 31 31 H 1.08995 * 109.47373 * 244.45412 * 3 2 1 32 32 H 1.09004 * 109.47080 * 306.04986 * 5 4 3 33 33 H 1.09001 * 109.47471 * 186.04602 * 5 4 3 34 34 H 0.97002 * 120.00481 * 179.97438 * 9 8 6 35 35 H 1.08007 * 120.48673 * 0.02562 * 15 14 4 36 36 H 1.07993 * 125.18763 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9870 1.3373 1.1421 5 6 3.4629 2.7036 1.3959 6 6 2.3084 3.5625 1.8440 7 1 1.3194 3.1370 1.9271 8 6 2.5141 4.8927 2.1428 9 7 3.7176 5.4121 2.0363 10 14 1.0833 5.9571 2.6988 11 1 0.5032 5.3951 3.9449 12 1 1.5643 7.3384 2.9553 13 1 0.0448 5.9841 1.6377 14 6 4.0430 0.4751 0.9473 15 6 4.9392 0.6809 -0.0838 16 6 5.9975 -0.2094 -0.2469 17 6 6.9884 0.0018 -1.3624 18 9 7.8827 -1.0733 -1.4017 19 9 6.3073 0.0866 -2.5814 20 9 7.6953 1.1884 -1.1397 21 7 6.1351 -1.2374 0.5641 22 6 5.2722 -1.4525 1.5637 23 7 5.1979 -2.3964 2.4958 24 6 4.1457 -2.1759 3.2743 25 7 3.5193 -1.0970 2.8724 26 7 4.2214 -0.6028 1.7658 27 1 -0.5399 0.9354 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3579 2.1320 0.0799 31 1 2.6290 1.3981 -0.9271 32 1 3.8888 3.1158 0.4811 33 1 4.2250 2.6841 2.1750 34 1 3.8623 6.3480 2.2461 35 1 4.8231 1.5222 -0.7511 36 1 3.8508 -2.7915 4.1111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291904644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:52 Heat of formation + Delta-G solvation = 35.233153 kcal Electronic energy + Delta-G solvation = -28200.664312 eV Core-core repulsion = 23695.420327 eV Total energy + Delta-G solvation = -4505.243985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.36157 -47.88639 -47.79540 -42.96869 -39.58189 -37.79305 -34.21233 -33.50475 -32.47584 -31.75417 -30.24825 -27.75605 -27.23176 -25.79591 -24.28968 -23.13980 -22.47884 -20.90425 -19.74380 -19.31414 -18.84874 -18.74627 -17.81969 -17.66387 -16.82475 -16.39608 -15.63278 -15.37592 -15.09759 -14.73617 -14.71830 -14.49828 -14.33424 -14.23601 -14.03767 -13.93447 -13.92586 -13.11610 -13.04327 -12.86897 -12.64940 -12.45300 -12.14461 -11.89969 -11.61273 -11.05406 -11.01119 -10.71340 -10.43900 -10.24674 -10.22734 -9.91412 -9.74484 -9.32114 -8.77699 -8.65338 -8.26776 -6.32584 -4.37621 -0.00929 0.51262 1.65971 2.03210 2.37442 2.49811 2.99619 3.10967 3.17937 3.23745 3.25632 3.35927 3.79640 3.95644 4.10291 4.16786 4.27969 4.61340 4.76628 5.01946 5.03427 5.08455 5.21597 5.30086 5.54294 5.89764 5.95146 6.03197 6.08011 6.21635 6.57029 6.67700 6.72638 6.88487 7.10150 7.26429 7.31848 7.69830 7.82710 7.98366 8.67084 9.28302 10.77690 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.004737 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.853144 B = 5909.944348 C = 6883.041196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.151 4.151 3 C 0.093 3.907 4 N -0.503 5.503 5 C 0.204 3.796 6 C -0.521 4.521 7 H 0.070 0.930 8 C 0.063 3.937 9 N -0.891 5.891 10 Si 0.906 3.094 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.437 3.563 15 C -0.238 4.238 16 C 0.156 3.844 17 C 0.531 3.469 18 F -0.156 7.156 19 F -0.162 7.162 20 F -0.158 7.158 21 N -0.430 5.430 22 C 0.445 3.555 23 N -0.522 5.522 24 C 0.239 3.761 25 N -0.294 5.294 26 N -0.302 5.302 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.051 0.949 32 H 0.015 0.985 33 H 0.037 0.963 34 H 0.268 0.732 35 H 0.181 0.819 36 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -10.115 -6.740 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C -0.031 4.031 4 N -0.226 5.226 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.088 0.912 8 C -0.140 4.140 9 N -0.529 5.529 10 Si 0.733 3.267 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.221 3.779 15 C -0.267 4.267 16 C -0.010 4.010 17 C 0.475 3.525 18 F -0.137 7.137 19 F -0.143 7.143 20 F -0.140 7.140 21 N -0.145 5.145 22 C 0.084 3.916 23 N -0.255 5.255 24 C -0.062 4.062 25 N -0.124 5.124 26 N -0.084 5.084 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.199 0.801 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.431 -10.885 -5.727 12.383 hybrid contribution -0.576 1.439 -0.276 1.575 sum 0.855 -9.446 -6.003 11.225 Atomic orbital electron populations 1.23767 0.95579 1.01838 0.99995 1.22808 0.96358 0.97487 1.00293 1.21465 0.95208 0.97327 0.89119 1.58844 1.12093 1.11171 1.40497 1.20086 0.97434 0.77250 0.96974 1.20915 0.94591 0.93556 1.46855 0.91154 1.24967 0.96258 0.97798 0.95024 1.69921 1.20885 1.14362 1.47703 0.86427 0.81804 0.79049 0.79448 1.19938 1.21103 1.19945 1.19189 0.91141 0.83844 0.83726 1.22157 0.96764 1.05027 1.02787 1.21365 0.94007 0.91561 0.94078 1.17517 0.79491 0.75053 0.80456 1.93271 1.68948 1.55068 1.96398 1.93265 1.79716 1.95986 1.45335 1.93303 1.79252 1.46887 1.94514 1.67310 1.24760 1.19502 1.02895 1.22400 0.85848 0.88793 0.94571 1.70912 1.23169 1.24160 1.07249 1.26465 0.88471 0.93116 0.98179 1.78828 1.18971 1.14562 1.00014 1.49429 1.20034 1.18297 1.20632 0.87925 0.88753 0.89086 0.86522 0.93096 0.96733 0.94478 0.92274 0.80131 0.75034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 14.32 29.02 0.42 -1.88 16 2 C -0.15 -2.25 9.34 -36.03 -0.34 -2.58 16 3 C 0.09 1.53 5.17 -4.97 -0.03 1.50 16 4 N -0.50 -9.69 4.49 -175.45 -0.79 -10.48 16 5 C 0.20 4.63 4.29 -4.98 -0.02 4.61 16 6 C -0.52 -12.97 8.30 -34.44 -0.29 -13.26 16 7 H 0.07 1.73 7.24 -52.49 -0.38 1.35 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -24.09 13.29 55.43 0.74 -23.35 16 10 Si 0.91 19.91 29.54 -169.99 -5.02 14.89 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 14 C 0.44 7.79 5.14 -152.98 -0.79 7.00 16 15 C -0.24 -3.63 8.08 -39.24 -0.32 -3.95 16 16 C 0.16 2.33 6.29 -82.29 -0.52 1.81 16 17 C 0.53 6.79 3.33 36.01 0.12 6.91 16 18 F -0.16 -2.05 16.86 2.25 0.04 -2.02 16 19 F -0.16 -1.89 17.16 2.25 0.04 -1.85 16 20 F -0.16 -2.05 17.29 2.25 0.04 -2.01 16 21 N -0.43 -7.24 9.86 -10.18 -0.10 -7.35 16 22 C 0.44 7.97 9.00 -323.15 -2.91 5.07 16 23 N -0.52 -8.89 11.26 -15.66 -0.18 -9.07 16 24 C 0.24 3.51 12.98 -91.96 -1.19 2.32 16 25 N -0.29 -5.25 12.78 29.26 0.37 -4.87 16 26 N -0.30 -5.53 3.93 -12.98 -0.05 -5.58 16 27 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 28 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.09 1.40 7.93 -52.48 -0.42 0.98 16 30 H 0.12 2.02 6.23 -51.93 -0.32 1.70 16 31 H 0.05 0.73 7.05 -51.93 -0.37 0.37 16 32 H 0.01 0.34 7.48 -51.93 -0.39 -0.05 16 33 H 0.04 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.18 2.40 7.19 -52.48 -0.38 2.03 16 36 H 0.23 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -28.94 332.88 -8.91 -37.84 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -3.06 Total: -0.25 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -5.95 Total: 9.07 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.01 Total: -60.69 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.12 Total: -5.87 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.94 -8.91 -37.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291904644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.077 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds