Wall clock time and date at job start Tue Mar 31 2020 14:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00485 * 2 1 4 4 N 1.46903 * 109.47110 * 124.45270 * 3 2 1 5 5 C 1.46892 * 111.00053 * 195.53121 * 4 3 2 6 6 C 1.50704 * 109.47070 * 66.04862 * 5 4 3 7 7 H 1.07991 * 119.99713 * 359.72676 * 6 5 4 8 8 C 1.37876 * 119.99915 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00172 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99992 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47344 * 59.99858 * 10 8 6 12 12 H 1.48496 * 109.47481 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47042 * 300.00326 * 10 8 6 14 14 C 1.37713 * 110.99575 * 71.57997 * 4 3 2 15 15 C 1.38156 * 120.64818 * 64.02180 * 14 4 3 16 16 C 1.39250 * 119.02330 * 179.77692 * 15 14 4 17 17 C 1.50699 * 119.79143 * 180.24617 * 16 15 14 18 18 F 1.39891 * 109.47577 * 185.25204 * 17 16 15 19 19 F 1.39894 * 109.47051 * 305.25900 * 17 16 15 20 20 F 1.39911 * 109.46571 * 65.25251 * 17 16 15 21 21 N 1.31660 * 120.43054 * 0.50329 * 16 15 14 22 22 C 1.33795 * 121.22135 * 359.74874 * 21 16 15 23 23 N 1.32858 * 132.41193 * 180.02562 * 22 21 16 24 24 C 1.32732 * 109.74192 * 179.97438 * 23 22 21 25 25 N 1.31068 * 109.62257 * 359.97438 * 24 23 22 26 26 N 1.36516 * 120.64284 * 244.29787 * 14 4 3 27 27 H 1.08001 * 119.99641 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.00414 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99723 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46725 * 4.45705 * 3 2 1 31 31 H 1.08995 * 109.47373 * 244.45412 * 3 2 1 32 32 H 1.09004 * 109.47080 * 306.04986 * 5 4 3 33 33 H 1.09001 * 109.47471 * 186.04602 * 5 4 3 34 34 H 0.97002 * 120.00481 * 179.97438 * 9 8 6 35 35 H 1.08007 * 120.48673 * 0.02562 * 15 14 4 36 36 H 1.07993 * 125.18763 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9870 1.3373 1.1421 5 6 3.4629 2.7036 1.3959 6 6 2.3084 3.5625 1.8440 7 1 1.3194 3.1370 1.9271 8 6 2.5141 4.8927 2.1428 9 7 3.7176 5.4121 2.0363 10 14 1.0833 5.9571 2.6988 11 1 0.5032 5.3951 3.9449 12 1 1.5643 7.3384 2.9553 13 1 0.0448 5.9841 1.6377 14 6 4.0430 0.4751 0.9473 15 6 4.9392 0.6809 -0.0838 16 6 5.9975 -0.2094 -0.2469 17 6 6.9884 0.0018 -1.3624 18 9 7.8827 -1.0733 -1.4017 19 9 6.3073 0.0866 -2.5814 20 9 7.6953 1.1884 -1.1397 21 7 6.1351 -1.2374 0.5641 22 6 5.2722 -1.4525 1.5637 23 7 5.1979 -2.3964 2.4958 24 6 4.1457 -2.1759 3.2743 25 7 3.5193 -1.0970 2.8724 26 7 4.2214 -0.6028 1.7658 27 1 -0.5399 0.9354 0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3579 2.1320 0.0799 31 1 2.6290 1.3981 -0.9271 32 1 3.8888 3.1158 0.4811 33 1 4.2250 2.6841 2.1750 34 1 3.8623 6.3480 2.2461 35 1 4.8231 1.5222 -0.7511 36 1 3.8508 -2.7915 4.1111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291904644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:52 Heat of formation + Delta-G solvation = 21.743209 kcal Electronic energy + Delta-G solvation = -28201.249280 eV Core-core repulsion = 23695.420327 eV Total energy + Delta-G solvation = -4505.828953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.100 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.41286 -48.91591 -48.85568 -44.25602 -40.91212 -39.14973 -35.50826 -35.12704 -33.97912 -33.03130 -31.60499 -29.38993 -28.50295 -27.11269 -25.73214 -24.48786 -23.89677 -22.29550 -20.91986 -20.54022 -20.01821 -19.79668 -19.15154 -18.84503 -18.35699 -17.96522 -17.06027 -16.86261 -16.35275 -16.09082 -15.77208 -15.60402 -15.54136 -15.47073 -15.27140 -14.97608 -14.97054 -14.55195 -14.32188 -14.27954 -14.06261 -13.76023 -13.60296 -13.31012 -13.12177 -12.71920 -12.67347 -12.12221 -12.00411 -11.73078 -11.59842 -11.45857 -11.17229 -10.69413 -10.50420 -9.97794 -9.77551 -8.28047 -6.38678 -1.29508 -0.77227 0.38796 0.86526 1.21729 1.29523 1.44185 1.46087 1.53605 1.82392 1.84212 2.20784 2.35010 2.54780 2.78872 3.00768 3.03780 3.07789 3.42934 3.52647 3.82163 3.88164 3.98400 4.11545 4.30984 4.58597 4.69845 4.78874 4.88629 4.91779 4.99766 5.09105 5.49538 5.60589 5.70226 5.77962 5.82132 5.83733 6.16856 6.59017 6.71842 7.31068 8.82376 Molecular weight = 327.10amu Principal moments of inertia in cm(-1) A = 0.010996 B = 0.004737 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.853144 B = 5909.944348 C = 6883.041196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.168 4.168 3 C 0.094 3.906 4 N -0.512 5.512 5 C 0.222 3.778 6 C -0.528 4.528 7 H 0.070 0.930 8 C 0.015 3.985 9 N -0.925 5.925 10 Si 0.967 3.033 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.260 1.260 14 C 0.417 3.583 15 C -0.226 4.226 16 C 0.161 3.839 17 C 0.543 3.457 18 F -0.155 7.155 19 F -0.151 7.151 20 F -0.157 7.157 21 N -0.439 5.439 22 C 0.431 3.569 23 N -0.536 5.536 24 C 0.254 3.746 25 N -0.330 5.330 26 N -0.309 5.309 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.012 0.988 33 H 0.000 1.000 34 H 0.268 0.732 35 H 0.199 0.801 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -10.697 -7.241 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.187 4.187 3 C -0.030 4.030 4 N -0.235 5.235 5 C 0.099 3.901 6 C -0.566 4.566 7 H 0.088 0.912 8 C -0.185 4.185 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.185 1.185 14 C 0.201 3.799 15 C -0.255 4.255 16 C -0.006 4.006 17 C 0.487 3.513 18 F -0.136 7.136 19 F -0.132 7.132 20 F -0.138 7.138 21 N -0.154 5.154 22 C 0.070 3.930 23 N -0.270 5.270 24 C -0.046 4.046 25 N -0.159 5.159 26 N -0.091 5.091 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.018 0.982 34 H 0.077 0.923 35 H 0.216 0.784 36 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 0.412 -11.490 -6.249 13.085 hybrid contribution -0.255 1.527 -0.127 1.553 sum 0.157 -9.963 -6.376 11.830 Atomic orbital electron populations 1.24002 0.94998 1.03117 0.97195 1.22638 0.96840 0.96364 1.02856 1.21502 0.94794 0.97836 0.88864 1.58611 1.12979 1.09509 1.42402 1.19643 0.95811 0.79215 0.95450 1.21212 0.95157 0.94015 1.46213 0.91158 1.25762 0.98467 0.99139 0.95146 1.70031 1.22740 1.14617 1.49051 0.85467 0.79133 0.77155 0.79109 1.20066 1.21123 1.18479 1.19298 0.91680 0.84157 0.84815 1.22356 0.95982 1.05169 1.01995 1.21658 0.94103 0.90714 0.94076 1.17185 0.79004 0.75025 0.80080 1.93277 1.68855 1.55138 1.96370 1.93293 1.79505 1.95928 1.44447 1.93314 1.79145 1.46805 1.94532 1.67358 1.24804 1.20204 1.03064 1.22696 0.86083 0.89149 0.95084 1.70954 1.24117 1.24287 1.07601 1.27410 0.86867 0.92215 0.98150 1.78770 1.20415 1.16102 1.00655 1.49455 1.20240 1.18539 1.20866 0.87363 0.86669 0.89707 0.87716 0.91416 0.97067 0.98169 0.92340 0.78366 0.70333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 14.32 67.78 0.97 -2.82 16 2 C -0.17 -4.85 9.34 25.65 0.24 -4.61 16 3 C 0.09 3.03 5.17 85.56 0.44 3.48 16 4 N -0.51 -19.87 4.49 -708.99 -3.18 -23.06 16 5 C 0.22 10.27 4.29 85.56 0.37 10.64 16 6 C -0.53 -26.49 8.30 25.60 0.21 -26.28 16 7 H 0.07 3.46 7.24 -2.92 -0.02 3.43 16 8 C 0.01 0.76 5.46 84.65 0.46 1.23 16 9 N -0.93 -50.67 13.29 21.45 0.28 -50.38 16 10 Si 0.97 40.58 29.54 68.60 2.03 42.61 16 11 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 14 C 0.42 14.89 5.14 131.99 0.68 15.57 16 15 C -0.23 -6.80 8.08 22.49 0.18 -6.62 16 16 C 0.16 4.67 6.29 42.83 0.27 4.94 16 17 C 0.54 13.16 3.33 71.24 0.24 13.40 16 18 F -0.16 -3.89 16.86 44.97 0.76 -3.13 16 19 F -0.15 -3.24 17.16 44.97 0.77 -2.47 16 20 F -0.16 -3.85 17.29 44.97 0.78 -3.08 16 21 N -0.44 -14.59 9.86 -186.12 -1.83 -16.42 16 22 C 0.43 15.32 9.00 261.61 2.35 17.67 16 23 N -0.54 -17.82 11.26 -203.47 -2.29 -20.11 16 24 C 0.25 7.11 12.98 180.82 2.35 9.46 16 25 N -0.33 -11.63 12.78 -61.35 -0.78 -12.41 16 26 N -0.31 -11.32 3.93 -194.98 -0.77 -12.09 16 27 H 0.11 2.52 7.84 -2.91 -0.02 2.50 16 28 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.08 2.56 7.93 -2.91 -0.02 2.53 16 30 H 0.10 3.59 6.23 -2.38 -0.01 3.58 16 31 H 0.07 1.89 7.05 -2.39 -0.02 1.88 16 32 H 0.01 0.53 7.48 -2.39 -0.02 0.52 16 33 H 0.00 0.01 8.05 -2.39 -0.02 -0.01 16 34 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.20 5.10 7.19 -2.91 -0.02 5.08 16 36 H 0.28 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -62.39 332.88 5.67 -56.72 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.15 Total: 7.76 kcal Atomic # 6 Polarization: 27.29 SS G_CDS: 8.76 Total: 36.05 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -8.57 Total: -134.47 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.31 Total: -8.67 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -62.39 5.67 -56.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291904644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.464 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds