Wall clock time and date at job start Tue Mar 31 2020 15:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 5 5 C 1.46897 * 111.00133 * 275.00091 * 4 2 1 6 6 C 1.52997 * 109.47029 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.47048 * 179.97438 * 6 5 4 8 8 S 1.80996 * 109.47231 * 180.02562 * 7 6 5 9 9 C 1.76196 * 100.00055 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00111 * 359.97438 * 9 8 7 11 11 C 1.38799 * 120.00199 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00358 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99792 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47105 * 90.00360 * 13 11 9 15 15 H 1.48504 * 109.47119 * 210.00033 * 13 11 9 16 16 H 1.48499 * 109.47146 * 330.00382 * 13 11 9 17 17 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 18 18 H 1.09005 * 109.68301 * 184.99803 * 17 2 1 19 19 O 1.43018 * 109.69419 * 305.53781 * 17 2 1 20 20 C 1.43043 * 114.24755 * 171.77977 * 19 17 2 21 21 C 1.53434 * 109.07724 * 288.73790 * 20 19 17 22 22 C 1.51405 * 107.90440 * 47.46828 * 21 20 19 23 23 S 1.75505 * 126.27542 * 164.48194 * 22 21 20 24 24 C 1.75802 * 91.03762 * 180.02562 * 23 22 21 25 25 C 1.33074 * 109.61176 * 359.97438 * 24 23 22 26 26 C 1.34930 * 123.69138 * 344.51274 * 22 21 20 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.00901 * 110.99931 * 151.04418 * 4 2 1 31 31 H 1.09003 * 109.46826 * 299.99875 * 5 4 2 32 32 H 1.08993 * 109.47326 * 59.99934 * 5 4 2 33 33 H 1.08997 * 109.47410 * 299.99878 * 6 5 4 34 34 H 1.09002 * 109.47240 * 59.99963 * 6 5 4 35 35 H 1.09003 * 109.47023 * 299.99879 * 7 6 5 36 36 H 1.08993 * 109.47111 * 59.99927 * 7 6 5 37 37 H 0.97000 * 120.00157 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.53327 * 48.61907 * 20 19 17 39 39 H 1.09002 * 109.53579 * 168.85739 * 20 19 17 40 40 H 1.09006 * 109.77060 * 167.06472 * 21 20 19 41 41 H 1.08996 * 109.77634 * 287.80649 * 21 20 19 42 42 H 1.08003 * 125.19782 * 179.97438 * 24 23 22 43 43 H 1.08007 * 122.18018 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5963 -0.5330 3.5741 7 6 2.6623 0.4203 4.7691 8 16 3.2708 -0.4732 6.2207 9 6 3.2475 0.8254 7.4114 10 1 2.9193 1.8138 7.1259 11 6 3.6510 0.5780 8.7162 12 7 3.6332 1.5480 9.6058 13 14 4.2181 -1.1320 9.2101 14 1 5.6834 -1.2480 8.9984 15 1 3.9053 -1.3624 10.6435 16 1 3.5164 -2.1448 8.3813 17 6 2.0399 -0.7213 -1.2493 18 1 3.1263 -0.8014 -1.2092 19 8 1.4626 -2.0278 -1.3208 20 6 1.7258 -2.7202 -2.5445 21 6 0.9224 -2.0638 -3.6749 22 6 1.1243 -0.5662 -3.5807 23 16 0.7543 0.6120 -4.8277 24 6 1.3111 1.9239 -3.7982 25 6 1.7236 1.4325 -2.6324 26 6 1.6282 0.0542 -2.4935 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9174 -1.1205 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0872 0.6162 2.5525 33 1 1.9203 -1.3568 3.8029 34 1 3.5918 -0.9263 3.3681 35 1 3.3386 1.2439 4.5400 36 1 1.6671 0.8140 4.9752 37 1 3.9155 1.3752 10.5175 38 1 2.7900 -2.6639 -2.7735 39 1 1.4281 -3.7639 -2.4441 40 1 1.2806 -2.4242 -4.6393 41 1 -0.1353 -2.3019 -3.5620 42 1 1.3175 2.9690 -4.0704 43 1 2.1079 2.0645 -1.8454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292284144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:42 Heat of formation + Delta-G solvation = -26.488483 kcal Electronic energy + Delta-G solvation = -22594.043908 eV Core-core repulsion = 19277.424627 eV Total energy + Delta-G solvation = -3316.619281 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.43197 -37.15470 -36.82314 -33.88330 -32.41813 -32.36319 -30.31025 -28.72998 -26.34803 -25.73978 -25.06726 -24.05633 -22.18779 -21.15975 -20.89754 -18.61589 -17.77817 -17.43847 -17.11346 -16.15811 -15.63154 -15.38015 -15.04534 -14.98156 -14.70558 -14.48703 -14.01512 -13.85812 -13.76198 -13.09138 -12.92334 -12.81148 -12.58169 -12.49966 -12.32612 -12.18989 -11.71626 -11.61050 -11.48758 -11.46413 -11.09045 -11.03841 -10.98461 -10.87884 -10.43533 -10.10257 -9.93622 -9.73891 -8.98126 -8.95917 -8.73313 -8.52737 -8.42808 -6.90939 -6.26022 -3.97856 0.57344 1.20963 1.58408 2.23987 3.03629 3.32095 3.37882 3.48341 3.58954 4.00256 4.21032 4.34164 4.39190 4.49993 4.67755 4.76072 4.78746 4.84830 4.89365 5.01210 5.12649 5.13772 5.20382 5.28434 5.32633 5.40780 5.46466 5.56114 5.61864 5.71060 5.76642 5.84402 5.86675 5.92442 6.04953 6.06732 6.26181 6.34484 6.53988 6.67735 6.82827 7.04858 7.35917 7.97774 8.46648 9.20005 10.83446 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.031220 B = 0.001963 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.653784 B =14260.559750 C =14876.018448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.100 3.900 3 H 0.056 0.944 4 N -0.677 5.677 5 C 0.063 3.937 6 C -0.098 4.098 7 C -0.081 4.081 8 S -0.215 6.215 9 C -0.501 4.501 10 H 0.087 0.913 11 C 0.090 3.910 12 N -0.883 5.883 13 Si 0.862 3.138 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.237 1.237 17 C 0.156 3.844 18 H 0.071 0.929 19 O -0.352 6.352 20 C 0.063 3.937 21 C -0.082 4.082 22 C -0.175 4.175 23 S 0.102 5.898 24 C -0.214 4.214 25 C -0.119 4.119 26 C -0.135 4.135 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.341 0.659 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.270 0.730 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.166 0.834 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -4.384 -32.573 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.010 4.010 3 H 0.074 0.926 4 N -0.309 5.309 5 C -0.067 4.067 6 C -0.137 4.137 7 C -0.230 4.230 8 S 0.012 5.988 9 C -0.649 4.649 10 H 0.105 0.895 11 C -0.118 4.118 12 N -0.520 5.520 13 Si 0.687 3.313 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.161 1.161 17 C 0.095 3.905 18 H 0.088 0.912 19 O -0.270 6.270 20 C -0.015 4.015 21 C -0.122 4.122 22 C -0.292 4.292 23 S 0.368 5.632 24 C -0.350 4.350 25 C -0.149 4.149 26 C -0.148 4.148 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.159 0.841 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.184 0.816 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.963 -5.758 -33.434 34.447 hybrid contribution 1.448 1.733 1.203 2.559 sum -4.515 -4.025 -32.232 32.794 Atomic orbital electron populations 1.21659 0.93601 1.03085 1.00696 1.21516 0.97408 0.94772 0.87333 0.92625 1.60443 1.33501 1.33280 1.03699 1.22071 1.00832 0.93546 0.90279 1.21290 1.01754 0.98413 0.92224 1.23006 1.03125 1.00437 0.96469 1.84161 1.86883 1.21650 1.06080 1.22133 1.51050 0.96297 0.95427 0.89457 1.24809 0.94077 0.97578 0.95299 1.69942 1.46093 1.32132 1.03796 0.86661 0.80434 0.85144 0.79052 1.19420 1.20144 1.16099 1.21178 0.96118 0.82384 0.90828 0.91177 1.88128 1.75694 1.27243 1.35890 1.22657 0.98452 0.96451 0.83961 1.20997 1.02602 0.88104 1.00450 1.24756 1.07421 0.99684 0.97363 1.84105 1.63852 0.97030 1.18165 1.25426 1.08670 1.02728 0.98140 1.19889 1.02644 0.94176 0.98187 1.20119 1.03999 0.93883 0.96806 0.92768 0.93055 0.91043 0.84075 0.95370 0.90864 0.90536 0.91774 0.91689 0.91376 0.92015 0.92716 0.87773 0.89601 0.89223 0.81638 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.03 37.16 0.34 -1.11 16 2 C 0.10 1.02 2.30 -67.71 -0.16 0.86 16 3 H 0.06 0.54 6.75 -51.93 -0.35 0.19 16 4 N -0.68 -7.87 6.27 -106.73 -0.67 -8.54 16 5 C 0.06 0.81 5.48 -3.83 -0.02 0.79 16 6 C -0.10 -1.52 5.48 -26.73 -0.15 -1.67 16 7 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 8 S -0.22 -5.33 19.41 -107.50 -2.09 -7.42 16 9 C -0.50 -14.73 10.04 30.94 0.31 -14.41 16 10 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 11 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 12 N -0.88 -27.02 13.97 55.49 0.78 -26.25 16 13 Si 0.86 21.79 27.74 -169.99 -4.71 17.07 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 17 C 0.16 1.46 2.63 -27.10 -0.07 1.39 16 18 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 19 O -0.35 -3.55 9.44 -35.23 -0.33 -3.89 16 20 C 0.06 0.45 6.83 37.38 0.26 0.70 16 21 C -0.08 -0.54 6.55 -27.31 -0.18 -0.72 16 22 C -0.17 -1.48 6.44 -35.14 -0.23 -1.70 16 23 S 0.10 0.76 23.32 -107.50 -2.51 -1.74 16 24 C -0.21 -1.60 11.21 28.94 0.32 -1.28 16 25 C -0.12 -0.99 9.39 -41.15 -0.39 -1.38 16 26 C -0.13 -1.22 4.43 -104.78 -0.46 -1.68 16 27 H 0.05 0.60 7.45 -51.93 -0.39 0.22 16 28 H 0.05 0.53 7.32 -51.93 -0.38 0.15 16 29 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 30 H 0.34 3.69 8.28 -39.29 -0.33 3.36 16 31 H 0.03 0.35 8.06 -51.93 -0.42 -0.07 16 32 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.27 8.14 -51.91 -0.42 0.84 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.14 1.02 7.28 -52.48 -0.38 0.64 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -32.05 369.72 -11.09 -43.14 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.82 Total: 1.06 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.31 Total: -19.02 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.11 Total: -34.79 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.33 Total: -3.89 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.07 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -4.59 Total: -9.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.05 -11.09 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292284144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.654 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds