Wall clock time and date at job start Tue Mar 31 2020 15:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 5 5 C 1.46897 * 111.00133 * 275.00091 * 4 2 1 6 6 C 1.52997 * 109.47029 * 180.02562 * 5 4 2 7 7 C 1.53007 * 109.47048 * 179.97438 * 6 5 4 8 8 S 1.80996 * 109.47231 * 180.02562 * 7 6 5 9 9 C 1.76196 * 100.00055 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00111 * 359.97438 * 9 8 7 11 11 C 1.38799 * 120.00199 * 179.97438 * 9 8 7 12 12 N 1.31633 * 120.00358 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99792 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47105 * 90.00360 * 13 11 9 15 15 H 1.48504 * 109.47119 * 210.00033 * 13 11 9 16 16 H 1.48499 * 109.47146 * 330.00382 * 13 11 9 17 17 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 18 18 H 1.09005 * 109.68301 * 184.99803 * 17 2 1 19 19 O 1.43018 * 109.69419 * 305.53781 * 17 2 1 20 20 C 1.43043 * 114.24755 * 171.77977 * 19 17 2 21 21 C 1.53434 * 109.07724 * 288.73790 * 20 19 17 22 22 C 1.51405 * 107.90440 * 47.46828 * 21 20 19 23 23 S 1.75505 * 126.27542 * 164.48194 * 22 21 20 24 24 C 1.75802 * 91.03762 * 180.02562 * 23 22 21 25 25 C 1.33074 * 109.61176 * 359.97438 * 24 23 22 26 26 C 1.34930 * 123.69138 * 344.51274 * 22 21 20 27 27 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.00901 * 110.99931 * 151.04418 * 4 2 1 31 31 H 1.09003 * 109.46826 * 299.99875 * 5 4 2 32 32 H 1.08993 * 109.47326 * 59.99934 * 5 4 2 33 33 H 1.08997 * 109.47410 * 299.99878 * 6 5 4 34 34 H 1.09002 * 109.47240 * 59.99963 * 6 5 4 35 35 H 1.09003 * 109.47023 * 299.99879 * 7 6 5 36 36 H 1.08993 * 109.47111 * 59.99927 * 7 6 5 37 37 H 0.97000 * 120.00157 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.53327 * 48.61907 * 20 19 17 39 39 H 1.09002 * 109.53579 * 168.85739 * 20 19 17 40 40 H 1.09006 * 109.77060 * 167.06472 * 21 20 19 41 41 H 1.08996 * 109.77634 * 287.80649 * 21 20 19 42 42 H 1.08003 * 125.19782 * 179.97438 * 24 23 22 43 43 H 1.08007 * 122.18018 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5963 -0.5330 3.5741 7 6 2.6623 0.4203 4.7691 8 16 3.2708 -0.4732 6.2207 9 6 3.2475 0.8254 7.4114 10 1 2.9193 1.8138 7.1259 11 6 3.6510 0.5780 8.7162 12 7 3.6332 1.5480 9.6058 13 14 4.2181 -1.1320 9.2101 14 1 5.6834 -1.2480 8.9984 15 1 3.9053 -1.3624 10.6435 16 1 3.5164 -2.1448 8.3813 17 6 2.0399 -0.7213 -1.2493 18 1 3.1263 -0.8014 -1.2092 19 8 1.4626 -2.0278 -1.3208 20 6 1.7258 -2.7202 -2.5445 21 6 0.9224 -2.0638 -3.6749 22 6 1.1243 -0.5662 -3.5807 23 16 0.7543 0.6120 -4.8277 24 6 1.3111 1.9239 -3.7982 25 6 1.7236 1.4325 -2.6324 26 6 1.6282 0.0542 -2.4935 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 2.9174 -1.1205 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0872 0.6162 2.5525 33 1 1.9203 -1.3568 3.8029 34 1 3.5918 -0.9263 3.3681 35 1 3.3386 1.2439 4.5400 36 1 1.6671 0.8140 4.9752 37 1 3.9155 1.3752 10.5175 38 1 2.7900 -2.6639 -2.7735 39 1 1.4281 -3.7639 -2.4441 40 1 1.2806 -2.4242 -4.6393 41 1 -0.1353 -2.3019 -3.5620 42 1 1.3175 2.9690 -4.0704 43 1 2.1079 2.0645 -1.8454 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292284144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:41 Heat of formation + Delta-G solvation = -46.149696 kcal Electronic energy + Delta-G solvation = -22594.896482 eV Core-core repulsion = 19277.424627 eV Total energy + Delta-G solvation = -3317.471855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07600 -38.06244 -37.45140 -34.95002 -34.67530 -33.04987 -31.25137 -29.48381 -27.98272 -27.09210 -26.06754 -24.84674 -22.76150 -22.40044 -21.72156 -19.60305 -19.23367 -18.35098 -17.83093 -17.11201 -17.04348 -16.43927 -16.39777 -15.94868 -15.65271 -15.42197 -15.11378 -14.88543 -14.73212 -14.47733 -14.03188 -13.75465 -13.66973 -13.40180 -13.24097 -13.17961 -13.02034 -12.96438 -12.70467 -12.57092 -12.44584 -12.02931 -12.01058 -11.90591 -11.66258 -11.58136 -11.45760 -11.15634 -10.57499 -10.54720 -9.53027 -9.37426 -9.29230 -8.97965 -8.51433 -6.22460 -0.01166 0.64521 1.00826 1.13623 1.32560 1.49075 1.62977 1.75928 2.25675 2.69564 2.75701 2.86430 3.11619 3.65082 3.74550 3.83346 4.01979 4.02383 4.12413 4.24553 4.28405 4.29942 4.36576 4.42273 4.47322 4.51728 4.65265 4.75037 4.76838 4.80115 4.84485 4.94260 4.97431 5.02010 5.11161 5.20440 5.30905 5.33123 5.45014 5.47169 5.70210 6.04938 6.10467 6.26128 6.48624 6.92643 8.61601 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.031220 B = 0.001963 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.653784 B =14260.559750 C =14876.018448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.102 3.898 3 H 0.064 0.936 4 N -0.682 5.682 5 C 0.074 3.926 6 C -0.085 4.085 7 C -0.069 4.069 8 S -0.221 6.221 9 C -0.522 4.522 10 H 0.050 0.950 11 C 0.036 3.964 12 N -0.923 5.923 13 Si 0.927 3.073 14 H -0.261 1.261 15 H -0.263 1.263 16 H -0.229 1.229 17 C 0.159 3.841 18 H 0.075 0.925 19 O -0.373 6.373 20 C 0.059 3.941 21 C -0.081 4.081 22 C -0.188 4.188 23 S 0.113 5.887 24 C -0.217 4.217 25 C -0.133 4.133 26 C -0.148 4.148 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.347 0.653 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.277 0.723 38 H 0.061 0.939 39 H 0.119 0.881 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.185 0.815 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -5.689 -34.356 35.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.008 4.008 3 H 0.082 0.918 4 N -0.315 5.315 5 C -0.056 4.056 6 C -0.124 4.124 7 C -0.218 4.218 8 S 0.007 5.993 9 C -0.670 4.670 10 H 0.068 0.932 11 C -0.169 4.169 12 N -0.561 5.561 13 Si 0.748 3.252 14 H -0.185 1.185 15 H -0.188 1.188 16 H -0.153 1.153 17 C 0.099 3.901 18 H 0.093 0.907 19 O -0.292 6.292 20 C -0.019 4.019 21 C -0.120 4.120 22 C -0.305 4.305 23 S 0.379 5.621 24 C -0.352 4.352 25 C -0.163 4.163 26 C -0.162 4.162 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.166 0.834 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.630 -7.060 -35.234 36.372 hybrid contribution 1.283 2.225 1.630 3.042 sum -4.347 -4.835 -33.604 34.227 Atomic orbital electron populations 1.21570 0.94211 1.02001 1.00531 1.21502 0.96789 0.95255 0.87212 0.91832 1.60367 1.34006 1.33223 1.03902 1.21866 1.00669 0.93508 0.89606 1.21166 1.02269 0.97421 0.91528 1.23074 1.02454 1.00841 0.95433 1.83858 1.87436 1.20866 1.07119 1.22351 1.50914 0.96452 0.97254 0.93177 1.25810 0.94014 1.01852 0.95216 1.70041 1.47036 1.34502 1.04496 0.85693 0.80278 0.79941 0.79302 1.18513 1.18778 1.15261 1.21087 0.96238 0.82317 0.90501 0.90708 1.88088 1.76069 1.27573 1.37462 1.22847 0.98994 0.96947 0.83127 1.21054 1.02622 0.87121 1.01218 1.25068 1.07161 1.00760 0.97548 1.84050 1.63485 0.96769 1.17755 1.25730 1.07915 1.03732 0.97848 1.20028 1.03304 0.94129 0.98838 1.20174 1.04826 0.94265 0.96895 0.93336 0.92746 0.92505 0.83397 0.94439 0.91197 0.91124 0.91010 0.91597 0.91765 0.91417 0.92114 0.86306 0.87763 0.89231 0.79790 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.03 71.98 0.65 -1.97 16 2 C 0.10 1.95 2.30 44.92 0.10 2.05 16 3 H 0.06 1.13 6.75 -2.39 -0.02 1.11 16 4 N -0.68 -14.75 6.27 -491.58 -3.08 -17.83 16 5 C 0.07 1.78 5.48 86.30 0.47 2.25 16 6 C -0.08 -2.50 5.48 30.60 0.17 -2.33 16 7 C -0.07 -2.65 5.67 71.98 0.41 -2.24 16 8 S -0.22 -10.77 19.41 -56.49 -1.10 -11.87 16 9 C -0.52 -31.22 10.04 67.95 0.68 -30.53 16 10 H 0.05 3.25 8.03 -2.91 -0.02 3.23 16 11 C 0.04 2.12 5.50 84.86 0.47 2.59 16 12 N -0.92 -57.38 13.97 21.65 0.30 -57.08 16 13 Si 0.93 44.65 27.74 68.60 1.90 46.55 16 14 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 16 H -0.23 -10.67 6.74 99.48 0.67 -10.00 16 17 C 0.16 2.78 2.63 30.36 0.08 2.86 16 18 H 0.08 1.21 8.03 -2.38 -0.02 1.19 16 19 O -0.37 -7.09 9.44 -148.98 -1.41 -8.50 16 20 C 0.06 0.74 6.83 72.13 0.49 1.23 16 21 C -0.08 -0.94 6.55 30.22 0.20 -0.74 16 22 C -0.19 -2.90 6.44 25.15 0.16 -2.74 16 23 S 0.11 1.51 23.32 -56.49 -1.32 0.20 16 24 C -0.22 -2.89 11.21 66.66 0.75 -2.14 16 25 C -0.13 -2.04 9.39 21.26 0.20 -1.84 16 26 C -0.15 -2.49 4.43 -19.97 -0.09 -2.58 16 27 H 0.05 1.04 7.45 -2.39 -0.02 1.03 16 28 H 0.05 1.09 7.32 -2.39 -0.02 1.07 16 29 H 0.06 1.35 7.56 -2.39 -0.02 1.33 16 30 H 0.35 6.84 8.28 -89.69 -0.74 6.10 16 31 H 0.04 0.84 8.06 -2.39 -0.02 0.82 16 32 H 0.07 1.74 7.44 -2.39 -0.02 1.73 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.06 2.51 8.14 -2.40 -0.02 2.50 16 37 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 38 H 0.06 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.15 1.93 7.28 -2.91 -0.02 1.91 16 Total: -1.00 -68.78 369.72 0.27 -68.52 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.22 Total: 16.15 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 4.74 Total: -36.14 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -2.78 Total: -74.91 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.41 Total: -8.50 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -2.41 Total: -11.67 kcal Total: -68.78 0.27 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292284144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.368 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds