Wall clock time and date at job start Tue Mar 31 2020 15:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47075 * 2 1 4 4 N 1.46903 * 109.47235 * 239.99946 * 2 1 3 5 5 C 1.46894 * 110.99769 * 85.00260 * 4 2 1 6 6 C 1.53001 * 109.46839 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46980 * 179.97438 * 6 5 4 8 8 S 1.81008 * 109.46927 * 179.97438 * 7 6 5 9 9 C 1.76196 * 99.99862 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.38796 * 120.00216 * 180.02562 * 9 8 7 12 12 N 1.31632 * 119.99815 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47584 * 89.99417 * 13 11 9 15 15 H 1.48498 * 109.47369 * 209.99706 * 13 11 9 16 16 H 1.48507 * 109.47004 * 329.99247 * 13 11 9 17 17 C 1.53005 * 109.46809 * 119.99975 * 2 1 3 18 18 H 1.08998 * 109.68295 * 174.46856 * 17 2 1 19 19 O 1.43019 * 109.72334 * 53.90699 * 17 2 1 20 20 C 1.43031 * 114.25231 * 188.22521 * 19 17 2 21 21 C 1.53448 * 109.06646 * 71.27234 * 20 19 17 22 22 C 1.51402 * 107.89174 * 312.48751 * 21 20 19 23 23 S 1.75516 * 126.27021 * 195.87703 * 22 21 20 24 24 C 1.75812 * 91.03337 * 180.02562 * 23 22 21 25 25 C 1.33078 * 109.61371 * 359.67762 * 24 23 22 26 26 C 1.34874 * 123.68128 * 15.57805 * 22 21 20 27 27 H 1.09005 * 109.46884 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47527 * 299.99901 * 1 2 3 29 29 H 1.09007 * 109.46907 * 60.00181 * 1 2 3 30 30 H 1.00900 * 110.99469 * 321.04578 * 4 2 1 31 31 H 1.09006 * 109.47098 * 299.99436 * 5 4 2 32 32 H 1.08997 * 109.47473 * 59.99919 * 5 4 2 33 33 H 1.08996 * 109.46986 * 299.99720 * 6 5 4 34 34 H 1.09003 * 109.46966 * 60.00179 * 6 5 4 35 35 H 1.08996 * 109.47374 * 299.99900 * 7 6 5 36 36 H 1.08997 * 109.47060 * 60.00132 * 7 6 5 37 37 H 0.96996 * 120.00115 * 179.97438 * 12 11 9 38 38 H 1.09001 * 109.53225 * 191.13770 * 20 19 17 39 39 H 1.09002 * 109.54110 * 311.29903 * 20 19 17 40 40 H 1.08998 * 109.74812 * 192.90767 * 21 20 19 41 41 H 1.09001 * 109.80819 * 72.10476 * 21 20 19 42 42 H 1.07992 * 125.19745 * 179.97438 * 24 23 22 43 43 H 1.07994 * 122.18120 * 180.27870 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2226 -2.3468 6 6 2.5964 -0.5329 -3.5741 7 6 2.6612 0.4201 -4.7693 8 16 3.2698 -0.4735 -6.2210 9 6 3.2452 0.8248 -7.4120 10 1 2.9156 1.8130 -7.1268 11 6 3.6483 0.5773 -8.7168 12 7 4.0495 -0.6272 -9.0645 13 14 3.6229 1.9538 -9.9793 14 1 4.9309 2.6568 -9.9717 15 1 3.3749 1.3841 -11.3280 16 1 2.5423 2.9151 -9.6418 17 6 2.0400 -0.7213 1.2493 18 1 3.1254 -0.8098 1.2048 19 8 1.4531 -2.0231 1.3284 20 6 1.7167 -2.7130 2.5533 21 6 0.9232 -2.0463 3.6849 22 6 1.1371 -0.5508 3.5845 23 16 0.7901 0.6337 4.8323 24 6 1.3461 1.9383 3.7931 25 6 1.7489 1.4396 2.6269 26 6 1.6397 0.0613 2.4928 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.4496 -1.4979 -1.4100 31 1 1.0871 0.6163 -2.5525 32 1 2.7589 1.0462 -2.1181 33 1 3.5918 -0.9262 -3.3681 34 1 1.9203 -1.3567 -3.8029 35 1 1.6656 0.8131 -4.9751 36 1 3.3370 1.2441 -4.5407 37 1 4.3309 -0.8002 -9.9765 38 1 1.4104 -3.7547 2.4580 39 1 2.7826 -2.6654 2.7764 40 1 1.2829 -2.4064 4.6487 41 1 -0.1371 -2.2753 3.5772 42 1 1.3630 2.9841 4.0619 43 1 2.1354 2.0656 1.8363 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292284145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:44 Heat of formation + Delta-G solvation = -48.078061 kcal Electronic energy + Delta-G solvation = -22554.115362 eV Core-core repulsion = 19236.559887 eV Total energy + Delta-G solvation = -3317.555475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03498 -38.10821 -37.42869 -34.93481 -34.57897 -33.05281 -31.17683 -29.37823 -27.82557 -26.94912 -25.99786 -24.85614 -22.73689 -22.44913 -21.91794 -19.54155 -19.16560 -18.34331 -17.62120 -16.96770 -16.88865 -16.44830 -16.40393 -15.95548 -15.62109 -15.38847 -15.19736 -14.74532 -14.61769 -14.39219 -13.95023 -13.77636 -13.57136 -13.30532 -13.22172 -13.10305 -12.96982 -12.89714 -12.77470 -12.46285 -12.38724 -12.29464 -12.01491 -11.89189 -11.76669 -11.52735 -11.28855 -11.13455 -10.53442 -10.29975 -9.52618 -9.41421 -9.21732 -8.65365 -8.36353 -6.12528 0.00849 0.66323 1.02473 1.31909 1.39940 1.49239 1.65813 1.76421 2.29410 2.82890 2.97578 3.09867 3.35473 3.68993 3.80051 3.87810 4.04559 4.06468 4.17899 4.26541 4.30213 4.35982 4.38201 4.42661 4.50185 4.54145 4.65086 4.76729 4.79620 4.80872 4.84441 4.91356 4.96294 4.98710 5.13108 5.23984 5.26461 5.34377 5.38422 5.40483 5.49570 6.06429 6.19010 6.27642 6.46636 7.05613 8.73057 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.030335 B = 0.001905 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.811101 B =14696.679007 C =15345.201758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 H 0.095 0.905 4 N -0.685 5.685 5 C 0.076 3.924 6 C -0.084 4.084 7 C -0.086 4.086 8 S -0.200 6.200 9 C -0.537 4.537 10 H 0.073 0.927 11 C 0.013 3.987 12 N -0.907 5.907 13 Si 0.995 3.005 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.263 1.263 17 C 0.171 3.829 18 H 0.071 0.929 19 O -0.382 6.382 20 C 0.061 3.939 21 C -0.080 4.080 22 C -0.190 4.190 23 S 0.110 5.890 24 C -0.216 4.216 25 C -0.133 4.133 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.348 0.652 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.271 0.729 38 H 0.119 0.881 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.185 0.815 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.771 1.591 31.444 32.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 H 0.113 0.887 4 N -0.316 5.316 5 C -0.055 4.055 6 C -0.123 4.123 7 C -0.236 4.236 8 S 0.028 5.972 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.192 4.192 12 N -0.544 5.544 13 Si 0.817 3.183 14 H -0.193 1.193 15 H -0.199 1.199 16 H -0.187 1.187 17 C 0.110 3.890 18 H 0.088 0.912 19 O -0.300 6.300 20 C -0.017 4.017 21 C -0.119 4.119 22 C -0.308 4.308 23 S 0.376 5.624 24 C -0.351 4.351 25 C -0.163 4.163 26 C -0.161 4.161 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.167 0.833 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.203 0.797 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.429 0.366 32.702 33.537 hybrid contribution -0.475 2.214 -2.194 3.153 sum -7.904 2.580 30.508 31.621 Atomic orbital electron populations 1.22260 0.96217 1.02366 1.01634 1.21504 0.93726 0.97157 0.88419 0.88694 1.60443 1.57832 1.09848 1.03441 1.21849 0.99496 0.95106 0.89007 1.21120 1.02213 0.97222 0.91702 1.23147 1.02231 1.01236 0.96973 1.84668 1.86361 1.21076 1.05051 1.23042 1.51291 0.97099 0.97100 0.90909 1.26095 0.93865 0.99219 1.00001 1.70161 1.42122 1.22287 1.19822 0.85000 0.79101 0.77509 0.76692 1.19254 1.19927 1.18709 1.20932 0.96367 0.81669 0.89996 0.91162 1.87954 1.75603 1.28628 1.37846 1.22809 0.98963 0.96876 0.83082 1.21044 1.02556 0.87191 1.01098 1.25039 1.07539 1.00741 0.97456 1.84029 1.64077 0.96917 1.17359 1.25731 1.07986 1.03728 0.97690 1.20058 1.03201 0.94076 0.98966 1.20259 1.04349 0.94413 0.97040 0.92168 0.92264 0.92898 0.83328 0.94659 0.90615 0.91564 0.92003 0.92036 0.91844 0.91987 0.86303 0.92487 0.87862 0.89123 0.79736 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 8.77 71.98 0.63 -2.57 16 2 C 0.10 2.01 2.28 44.92 0.10 2.12 16 3 H 0.10 1.75 6.72 -2.39 -0.02 1.74 16 4 N -0.68 -15.83 6.22 -491.56 -3.06 -18.89 16 5 C 0.08 1.93 5.48 86.30 0.47 2.40 16 6 C -0.08 -2.72 5.48 30.60 0.17 -2.55 16 7 C -0.09 -3.50 5.67 71.98 0.41 -3.09 16 8 S -0.20 -10.85 21.44 -56.49 -1.21 -12.06 16 9 C -0.54 -31.45 9.50 67.95 0.65 -30.81 16 10 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 11 C 0.01 0.75 5.49 84.86 0.47 1.21 16 12 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 13 Si 1.00 44.33 29.55 68.60 2.03 46.35 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 17 C 0.17 3.33 2.91 30.36 0.09 3.42 16 18 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 19 O -0.38 -7.58 9.43 -148.98 -1.40 -8.99 16 20 C 0.06 0.84 6.83 72.13 0.49 1.34 16 21 C -0.08 -0.99 6.55 30.22 0.20 -0.79 16 22 C -0.19 -3.10 6.44 25.14 0.16 -2.94 16 23 S 0.11 1.53 23.32 -56.49 -1.32 0.22 16 24 C -0.22 -2.98 11.21 66.66 0.75 -2.23 16 25 C -0.13 -2.13 9.43 21.27 0.20 -1.93 16 26 C -0.15 -2.63 4.45 -19.97 -0.09 -2.72 16 27 H 0.06 1.25 7.54 -2.38 -0.02 1.23 16 28 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 29 H 0.05 1.02 7.45 -2.38 -0.02 1.01 16 30 H 0.35 8.18 8.47 -89.69 -0.76 7.42 16 31 H 0.04 0.86 7.44 -2.38 -0.02 0.84 16 32 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 2.44 8.14 -2.40 -0.02 2.42 16 36 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 37 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 0.77 8.09 -2.39 -0.02 0.75 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.15 2.04 7.27 -2.91 -0.02 2.02 16 Total: -1.00 -68.18 372.70 0.26 -67.92 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.24 Total: 19.75 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.69 Total: -39.16 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -2.77 Total: -74.04 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -1.40 Total: -8.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -2.53 Total: -11.84 kcal Total: -68.18 0.26 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292284145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.844 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds