Wall clock time and date at job start Tue Mar 31 2020 15:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 5 5 C 1.46906 * 110.99888 * 274.99671 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 S 1.80994 * 109.47387 * 180.02562 * 7 6 5 9 9 C 1.76194 * 100.00276 * 179.97438 * 8 7 6 10 10 H 1.08011 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.38801 * 120.00539 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99522 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00399 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47195 * 59.99669 * 13 11 9 15 15 H 1.48502 * 109.47363 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46965 * 300.00175 * 13 11 9 17 17 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 18 18 H 1.09002 * 109.68679 * 65.54317 * 17 2 1 19 19 O 1.43021 * 109.69284 * 305.00178 * 17 2 1 20 20 C 1.43046 * 114.24558 * 188.21842 * 19 17 2 21 21 C 1.53439 * 109.07702 * 71.26277 * 20 19 17 22 22 C 1.51395 * 107.90404 * 312.53715 * 21 20 19 23 23 S 1.75512 * 126.27229 * 195.55590 * 22 21 20 24 24 C 1.75813 * 91.03580 * 179.97438 * 23 22 21 25 25 C 1.33068 * 109.61246 * 0.02562 * 24 23 22 26 26 C 1.34874 * 123.68299 * 15.51668 * 22 21 20 27 27 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 28 28 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 30 30 H 1.00902 * 111.00533 * 151.04078 * 4 2 1 31 31 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 32 32 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 33 33 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 34 34 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 35 35 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 36 36 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 37 37 H 0.96995 * 119.99998 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.53617 * 191.14342 * 20 19 17 39 39 H 1.09002 * 109.53740 * 311.30570 * 20 19 17 40 40 H 1.09000 * 109.77082 * 72.13789 * 21 20 19 41 41 H 1.09002 * 109.77098 * 192.88042 * 21 20 19 42 42 H 1.07999 * 125.19202 * 180.02562 * 24 23 22 43 43 H 1.08002 * 122.18112 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5333 3.5744 7 6 2.6599 0.4196 4.7697 8 16 3.2669 -0.4742 6.2218 9 6 3.2425 0.8241 7.4127 10 1 2.9146 1.8128 7.1271 11 6 3.6447 0.5764 8.7178 12 7 4.0449 -0.6284 9.0658 13 14 3.6182 1.9527 9.9805 14 1 2.2323 2.4665 10.1236 15 1 4.0917 1.4335 11.2888 16 1 4.5101 3.0524 9.5329 17 6 2.0399 -0.7213 -1.2492 18 1 1.7617 -0.1562 -2.1388 19 8 1.4723 -2.0325 -1.3141 20 6 2.0235 -2.8610 -2.3417 21 6 3.4527 -3.2603 -1.9512 22 6 4.1783 -2.0105 -1.5000 23 16 5.9139 -1.8277 -1.3136 24 6 5.7148 -0.1586 -0.7982 25 6 4.4219 0.1561 -0.7932 26 6 3.5550 -0.8580 -1.1802 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9172 -1.1207 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0870 0.6163 2.5525 33 1 1.9183 -1.3566 3.8030 34 1 3.5904 -0.9273 3.3691 35 1 3.3364 1.2433 4.5415 36 1 1.6644 0.8134 4.9750 37 1 4.3263 -0.8014 9.9777 38 1 1.4127 -3.7567 -2.4545 39 1 2.0417 -2.3112 -3.2827 40 1 3.4237 -3.9843 -1.1368 41 1 3.9626 -3.6935 -2.8117 42 1 6.5191 0.5092 -0.5270 43 1 4.0696 1.1362 -0.5074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292284147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:47 Heat of formation + Delta-G solvation = -27.132051 kcal Electronic energy + Delta-G solvation = -23071.163955 eV Core-core repulsion = 19754.516767 eV Total energy + Delta-G solvation = -3316.647188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.39459 -36.91839 -36.76075 -33.77290 -32.40144 -32.25115 -29.99311 -28.99947 -26.22944 -25.63699 -24.60581 -24.08803 -22.08539 -21.03510 -20.78495 -18.57045 -17.66160 -17.41009 -17.02458 -16.10724 -15.57430 -15.22704 -14.94117 -14.77741 -14.58058 -14.34461 -13.88228 -13.82555 -13.63121 -13.06921 -13.02468 -12.66944 -12.35783 -12.27605 -12.16930 -12.12585 -11.76605 -11.44158 -11.34208 -11.19848 -11.05671 -10.99038 -10.85578 -10.67889 -10.58190 -10.30895 -9.86740 -9.47462 -9.01513 -8.83194 -8.61886 -8.27759 -8.24640 -6.47654 -6.18746 -3.88484 0.70251 1.34374 1.72372 2.33635 3.24184 3.25458 3.29989 3.45702 3.60597 4.19821 4.27581 4.31460 4.35221 4.57116 4.78383 4.82880 4.97374 5.01576 5.08818 5.16852 5.22460 5.31930 5.34744 5.39041 5.41378 5.48762 5.58567 5.62500 5.71850 5.81181 5.85428 5.90524 5.98946 6.03201 6.15288 6.20655 6.35396 6.41677 6.68605 6.81426 6.90101 7.19435 7.51806 7.63806 8.40210 9.27166 10.89443 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.002534 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.659632 B =11047.871577 C =11810.645815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.098 3.902 3 H 0.054 0.946 4 N -0.674 5.674 5 C 0.064 3.936 6 C -0.094 4.094 7 C -0.111 4.111 8 S -0.132 6.132 9 C -0.516 4.516 10 H 0.071 0.929 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.275 1.275 17 C 0.156 3.844 18 H 0.075 0.925 19 O -0.353 6.353 20 C 0.065 3.935 21 C -0.082 4.082 22 C -0.171 4.171 23 S 0.111 5.889 24 C -0.210 4.210 25 C -0.124 4.124 26 C -0.148 4.148 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.343 0.657 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.167 0.833 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -1.622 -27.942 28.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.012 4.012 3 H 0.072 0.928 4 N -0.307 5.307 5 C -0.067 4.067 6 C -0.133 4.133 7 C -0.260 4.260 8 S 0.096 5.904 9 C -0.665 4.665 10 H 0.089 0.911 11 C -0.138 4.138 12 N -0.506 5.506 13 Si 0.744 3.256 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.200 1.200 17 C 0.096 3.904 18 H 0.092 0.908 19 O -0.271 6.271 20 C -0.013 4.013 21 C -0.122 4.122 22 C -0.289 4.289 23 S 0.378 5.622 24 C -0.345 4.345 25 C -0.154 4.154 26 C -0.161 4.161 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.163 0.837 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.121 0.879 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.184 0.816 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.276 -4.075 -27.568 27.869 hybrid contribution -0.260 3.806 0.601 3.862 sum -0.536 -0.269 -26.967 26.974 Atomic orbital electron populations 1.21706 0.93605 1.03260 1.00876 1.21508 0.96819 0.94739 0.88156 0.92814 1.60472 1.33984 1.32827 1.03463 1.22073 1.00441 0.93595 0.90579 1.21218 1.01524 0.98340 0.92185 1.23218 1.02728 1.01112 0.98964 1.84640 1.85392 1.18786 1.01578 1.22659 1.50994 0.96708 0.96096 0.91081 1.25011 0.94682 0.96395 0.97717 1.70017 1.41394 1.20041 1.19126 0.86234 0.78656 0.81099 0.79598 1.19932 1.20823 1.19998 1.21234 0.85844 0.85106 0.98241 0.90780 1.88110 1.60775 1.23673 1.54546 1.22632 0.92876 0.95331 0.90511 1.20991 0.95615 0.93482 1.02088 1.24768 0.96403 0.99497 1.08226 1.84165 1.03723 1.08848 1.65473 1.25458 1.00509 0.99085 1.09479 1.19862 0.92155 1.00415 1.02978 1.20184 0.97513 0.93484 1.04891 0.93042 0.90839 0.92497 0.83678 0.95759 0.91116 0.90728 0.92085 0.92485 0.92145 0.92290 0.87906 0.92918 0.88927 0.89658 0.81580 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.22 37.15 0.34 -1.07 16 2 C 0.10 1.05 2.19 -67.72 -0.15 0.91 16 3 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 4 N -0.67 -8.86 6.26 -106.73 -0.67 -9.53 16 5 C 0.06 0.91 5.48 -3.82 -0.02 0.89 16 6 C -0.09 -1.64 5.48 -26.73 -0.15 -1.78 16 7 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 8 S -0.13 -3.57 21.44 -107.50 -2.30 -5.87 16 9 C -0.52 -15.14 9.50 30.94 0.29 -14.84 16 10 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 11 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 12 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 13 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 C 0.16 1.54 2.86 -27.10 -0.08 1.46 16 18 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 19 O -0.35 -3.73 9.46 -35.23 -0.33 -4.06 16 20 C 0.07 0.49 6.83 37.39 0.26 0.75 16 21 C -0.08 -0.64 6.55 -27.31 -0.18 -0.82 16 22 C -0.17 -1.68 6.44 -35.16 -0.23 -1.90 16 23 S 0.11 1.04 23.32 -107.50 -2.51 -1.47 16 24 C -0.21 -2.00 11.21 28.94 0.32 -1.68 16 25 C -0.12 -1.24 9.21 -41.13 -0.38 -1.62 16 26 C -0.15 -1.51 3.92 -104.78 -0.41 -1.92 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.85 7.57 -51.93 -0.39 0.46 16 29 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 30 H 0.34 4.72 6.64 -39.29 -0.26 4.46 16 31 H 0.02 0.33 8.06 -51.93 -0.42 -0.08 16 32 H 0.07 1.00 7.44 -51.93 -0.39 0.61 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 43 H 0.14 1.25 7.53 -52.49 -0.40 0.85 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -32.26 372.06 -11.56 -43.82 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.81 Total: 2.18 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.26 Total: -21.79 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.07 Total: -35.27 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.33 Total: -4.06 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -4.81 Total: -7.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.26 -11.56 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292284147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.690 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds