Wall clock time and date at job start Tue Mar 31 2020 15:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 5 5 C 1.46906 * 110.99888 * 274.99671 * 4 2 1 6 6 C 1.52999 * 109.46897 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46997 * 180.02562 * 6 5 4 8 8 S 1.80994 * 109.47387 * 180.02562 * 7 6 5 9 9 C 1.76194 * 100.00276 * 179.97438 * 8 7 6 10 10 H 1.08011 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.38801 * 120.00539 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99522 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00399 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47195 * 59.99669 * 13 11 9 15 15 H 1.48502 * 109.47363 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46965 * 300.00175 * 13 11 9 17 17 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 18 18 H 1.09002 * 109.68679 * 65.54317 * 17 2 1 19 19 O 1.43021 * 109.69284 * 305.00178 * 17 2 1 20 20 C 1.43046 * 114.24558 * 188.21842 * 19 17 2 21 21 C 1.53439 * 109.07702 * 71.26277 * 20 19 17 22 22 C 1.51395 * 107.90404 * 312.53715 * 21 20 19 23 23 S 1.75512 * 126.27229 * 195.55590 * 22 21 20 24 24 C 1.75813 * 91.03580 * 179.97438 * 23 22 21 25 25 C 1.33068 * 109.61246 * 0.02562 * 24 23 22 26 26 C 1.34874 * 123.68299 * 15.51668 * 22 21 20 27 27 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 28 28 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 30 30 H 1.00902 * 111.00533 * 151.04078 * 4 2 1 31 31 H 1.09000 * 109.47033 * 300.00113 * 5 4 2 32 32 H 1.09001 * 109.46544 * 60.00058 * 5 4 2 33 33 H 1.09000 * 109.47486 * 299.99976 * 6 5 4 34 34 H 1.09001 * 109.47362 * 60.00699 * 6 5 4 35 35 H 1.09000 * 109.46866 * 300.00212 * 7 6 5 36 36 H 1.08996 * 109.47261 * 59.99820 * 7 6 5 37 37 H 0.96995 * 119.99998 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.53617 * 191.14342 * 20 19 17 39 39 H 1.09002 * 109.53740 * 311.30570 * 20 19 17 40 40 H 1.09000 * 109.77082 * 72.13789 * 21 20 19 41 41 H 1.09002 * 109.77098 * 192.88042 * 21 20 19 42 42 H 1.07999 * 125.19202 * 180.02562 * 24 23 22 43 43 H 1.08002 * 122.18112 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5333 3.5744 7 6 2.6599 0.4196 4.7697 8 16 3.2669 -0.4742 6.2218 9 6 3.2425 0.8241 7.4127 10 1 2.9146 1.8128 7.1271 11 6 3.6447 0.5764 8.7178 12 7 4.0449 -0.6284 9.0658 13 14 3.6182 1.9527 9.9805 14 1 2.2323 2.4665 10.1236 15 1 4.0917 1.4335 11.2888 16 1 4.5101 3.0524 9.5329 17 6 2.0399 -0.7213 -1.2492 18 1 1.7617 -0.1562 -2.1388 19 8 1.4723 -2.0325 -1.3141 20 6 2.0235 -2.8610 -2.3417 21 6 3.4527 -3.2603 -1.9512 22 6 4.1783 -2.0105 -1.5000 23 16 5.9139 -1.8277 -1.3136 24 6 5.7148 -0.1586 -0.7982 25 6 4.4219 0.1561 -0.7932 26 6 3.5550 -0.8580 -1.1802 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9172 -1.1207 1.0287 31 1 2.7589 1.0461 2.1182 32 1 1.0870 0.6163 2.5525 33 1 1.9183 -1.3566 3.8030 34 1 3.5904 -0.9273 3.3691 35 1 3.3364 1.2433 4.5415 36 1 1.6644 0.8134 4.9750 37 1 4.3263 -0.8014 9.9777 38 1 1.4127 -3.7567 -2.4545 39 1 2.0417 -2.3112 -3.2827 40 1 3.4237 -3.9843 -1.1368 41 1 3.9626 -3.6935 -2.8117 42 1 6.5191 0.5092 -0.5270 43 1 4.0696 1.1362 -0.5074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292284147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:46 Heat of formation + Delta-G solvation = -46.417596 kcal Electronic energy + Delta-G solvation = -23072.000239 eV Core-core repulsion = 19754.516767 eV Total energy + Delta-G solvation = -3317.483472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11915 -37.91135 -37.47761 -34.94445 -34.59100 -33.03772 -31.05636 -29.77422 -27.84774 -26.96653 -25.82024 -24.89105 -22.75850 -22.42116 -21.65434 -19.57655 -19.24882 -18.35589 -17.79547 -17.11626 -16.89833 -16.51086 -16.24197 -16.04434 -15.59793 -15.40601 -15.09916 -14.83333 -14.56633 -14.36321 -13.97821 -13.69279 -13.59377 -13.35413 -13.17091 -12.95825 -12.91232 -12.83929 -12.78163 -12.62658 -12.38959 -12.24539 -12.04090 -11.92111 -11.61631 -11.51508 -11.31244 -11.13620 -10.54715 -10.32157 -9.54437 -9.37717 -9.25737 -8.67289 -8.37230 -6.13983 -0.01873 0.64009 1.00701 1.30697 1.40601 1.47387 1.60513 1.74154 2.28424 2.79915 2.96686 3.16072 3.35746 3.63763 3.67006 3.83163 4.01050 4.13617 4.18845 4.26310 4.28774 4.35903 4.40708 4.43465 4.45161 4.51681 4.66712 4.71807 4.77171 4.79472 4.85358 4.97250 4.98614 5.07548 5.11753 5.19507 5.30804 5.32720 5.38897 5.44453 5.52915 6.10578 6.17710 6.29849 6.46848 7.04412 8.72146 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.002534 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.659632 B =11047.871577 C =11810.645815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.097 3.903 3 H 0.065 0.935 4 N -0.681 5.681 5 C 0.077 3.923 6 C -0.081 4.081 7 C -0.085 4.085 8 S -0.200 6.200 9 C -0.539 4.539 10 H 0.073 0.927 11 C 0.014 3.986 12 N -0.908 5.908 13 Si 0.995 3.005 14 H -0.264 1.264 15 H -0.274 1.274 16 H -0.264 1.264 17 C 0.159 3.841 18 H 0.091 0.909 19 O -0.374 6.374 20 C 0.062 3.938 21 C -0.083 4.083 22 C -0.182 4.182 23 S 0.110 5.890 24 C -0.219 4.219 25 C -0.133 4.133 26 C -0.158 4.158 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.339 0.661 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.272 0.728 38 H 0.119 0.881 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.180 0.820 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 -0.287 -29.060 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 H 0.082 0.918 4 N -0.314 5.314 5 C -0.054 4.054 6 C -0.120 4.120 7 C -0.235 4.235 8 S 0.029 5.971 9 C -0.687 4.687 10 H 0.091 0.909 11 C -0.191 4.191 12 N -0.545 5.545 13 Si 0.816 3.184 14 H -0.189 1.189 15 H -0.199 1.199 16 H -0.189 1.189 17 C 0.099 3.901 18 H 0.108 0.892 19 O -0.293 6.293 20 C -0.016 4.016 21 C -0.122 4.122 22 C -0.300 4.300 23 S 0.376 5.624 24 C -0.355 4.355 25 C -0.163 4.163 26 C -0.171 4.171 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.159 0.841 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.197 0.803 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.723 -2.745 -28.707 28.847 hybrid contribution -0.127 3.335 0.847 3.443 sum -0.849 0.590 -27.860 27.879 Atomic orbital electron populations 1.21669 0.93264 1.02467 1.01610 1.21594 0.96975 0.95183 0.87538 0.91769 1.60447 1.33796 1.33011 1.04176 1.21862 1.00600 0.93383 0.89582 1.21089 1.01168 0.97532 0.92251 1.23132 1.02341 1.01039 0.96943 1.84685 1.86313 1.21134 1.05015 1.23014 1.51517 0.97026 0.97110 0.90877 1.26097 0.93773 0.99237 0.99956 1.70157 1.42077 1.22368 1.19863 0.85056 0.79216 0.77555 0.76525 1.18861 1.19924 1.18866 1.21224 0.85529 0.85169 0.98196 0.89200 1.88077 1.61306 1.24154 1.55748 1.22827 0.92759 0.95744 0.90278 1.21074 0.95928 0.92611 1.02578 1.25091 0.96600 1.00177 1.08082 1.84135 1.03846 1.08950 1.65431 1.25713 1.00957 0.99375 1.09425 1.20010 0.92331 1.00799 1.03185 1.20303 0.97807 0.93729 1.05235 0.90945 0.92345 0.93125 0.84138 0.94812 0.90678 0.91884 0.92643 0.91986 0.91819 0.91952 0.86279 0.91640 0.89651 0.87694 0.80308 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.22 71.98 0.66 -1.85 16 2 C 0.10 1.91 2.19 44.91 0.10 2.01 16 3 H 0.06 1.15 7.22 -2.39 -0.02 1.14 16 4 N -0.68 -17.13 6.26 -491.58 -3.08 -20.20 16 5 C 0.08 2.08 5.48 86.30 0.47 2.55 16 6 C -0.08 -2.81 5.48 30.60 0.17 -2.65 16 7 C -0.09 -3.55 5.67 71.98 0.41 -3.14 16 8 S -0.20 -11.02 21.44 -56.49 -1.21 -12.23 16 9 C -0.54 -31.82 9.50 67.95 0.65 -31.17 16 10 H 0.07 4.13 7.80 -2.90 -0.02 4.11 16 11 C 0.01 0.82 5.49 84.86 0.47 1.29 16 12 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 13 Si 0.99 44.52 29.55 68.60 2.03 46.54 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 C 0.16 2.87 2.86 30.36 0.09 2.95 16 18 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 19 O -0.37 -7.35 9.46 -148.98 -1.41 -8.76 16 20 C 0.06 0.82 6.83 72.13 0.49 1.31 16 21 C -0.08 -1.18 6.55 30.22 0.20 -0.98 16 22 C -0.18 -3.36 6.44 25.13 0.16 -3.20 16 23 S 0.11 1.97 23.32 -56.49 -1.32 0.65 16 24 C -0.22 -3.98 11.21 66.66 0.75 -3.23 16 25 C -0.13 -2.50 9.21 21.27 0.20 -2.30 16 26 C -0.16 -3.01 3.92 -19.97 -0.08 -3.09 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.29 7.57 -2.39 -0.02 1.27 16 29 H 0.05 1.01 7.45 -2.39 -0.02 0.99 16 30 H 0.34 9.05 6.64 -89.69 -0.60 8.45 16 31 H 0.03 0.86 8.06 -2.39 -0.02 0.84 16 32 H 0.07 2.00 7.44 -2.39 -0.02 1.98 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.52 8.14 -2.40 -0.02 2.50 16 36 H 0.06 2.61 8.14 -2.40 -0.02 2.59 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.14 2.39 7.53 -2.91 -0.02 2.37 16 Total: -1.00 -69.49 372.06 0.43 -69.06 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.40 Total: 22.06 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 4.73 Total: -41.50 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -2.79 Total: -75.83 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -1.41 Total: -8.76 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -2.53 Total: -11.58 kcal Total: -69.49 0.43 -69.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292284147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.646 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds