Wall clock time and date at job start Tue Mar 31 2020 14:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52999 * 109.46740 * 2 1 4 4 C 1.50699 * 109.46959 * 240.00513 * 2 1 3 5 5 H 1.08002 * 119.99457 * 239.99624 * 4 2 1 6 6 C 1.37877 * 120.00494 * 59.99717 * 4 2 1 7 7 N 1.31514 * 119.99711 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46998 * 90.00304 * 8 6 4 10 10 H 1.48500 * 109.46844 * 210.00182 * 8 6 4 11 11 H 1.48502 * 109.47111 * 330.00300 * 8 6 4 12 12 C 1.52993 * 109.46936 * 120.00005 * 2 1 3 13 13 S 1.81395 * 109.47682 * 300.00059 * 12 2 1 14 14 O 1.42101 * 110.54058 * 68.37548 * 13 12 2 15 15 O 1.42100 * 110.54448 * 291.63008 * 13 12 2 16 16 N 1.65593 * 104.45445 * 180.02562 * 13 12 2 17 17 C 1.46532 * 124.95462 * 270.00561 * 16 13 12 18 18 C 1.53748 * 105.19206 * 180.02562 * 17 16 13 19 19 C 1.51232 * 104.53634 * 359.97438 * 18 17 16 20 20 C 1.38194 * 130.95121 * 180.02562 * 19 18 17 21 21 C 1.38195 * 120.18101 * 179.74027 * 20 19 18 22 22 C 1.38537 * 119.80498 * 0.50999 * 21 20 19 23 23 F 1.35104 * 119.90865 * 179.76384 * 22 21 20 24 24 C 1.38039 * 120.17660 * 359.49137 * 22 21 20 25 25 C 1.38622 * 108.53179 * 359.97438 * 19 18 17 26 26 H 1.09000 * 109.47211 * 299.99745 * 1 2 3 27 27 H 1.09000 * 109.46869 * 60.00157 * 1 2 3 28 28 H 1.09000 * 109.46592 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46744 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47572 * 300.00053 * 3 2 1 31 31 H 1.09000 * 109.47060 * 60.00163 * 3 2 1 32 32 H 0.96998 * 119.99991 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47280 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.47174 * 60.00066 * 12 2 1 35 35 H 1.09000 * 110.30559 * 61.08737 * 17 16 13 36 36 H 1.09008 * 110.38231 * 298.98487 * 17 16 13 37 37 H 1.09001 * 110.41939 * 241.23464 * 18 17 16 38 38 H 1.08996 * 110.42766 * 118.75787 * 18 17 16 39 39 H 1.07991 * 119.90816 * 359.97438 * 20 19 18 40 40 H 1.07993 * 120.09700 * 180.27490 * 21 20 19 41 41 H 1.08001 * 119.86868 * 180.27443 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6310 -1.7564 -3.7120 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0542 -0.7401 3.9935 17 6 1.3876 -1.8769 4.6342 18 6 2.3522 -2.3398 5.7383 19 6 3.5302 -1.3972 5.6327 20 6 4.7016 -1.3263 6.3624 21 6 5.6462 -0.3614 6.0680 22 6 5.4112 0.5427 5.0450 23 9 6.3311 1.4899 4.7585 24 6 4.2422 0.4750 4.3140 25 6 3.2872 -0.5019 4.6027 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7089 1.1615 -3.4844 33 1 3.1301 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 1.2273 -2.6775 3.9120 36 1 0.4378 -1.5646 5.0686 37 1 2.6702 -3.3669 5.5594 38 1 1.8807 -2.2515 6.7170 39 1 4.8811 -2.0291 7.1624 40 1 6.5631 -0.3100 6.6362 41 1 4.0662 1.1796 3.5146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295634103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:37 Heat of formation + Delta-G solvation = -82.820701 kcal Electronic energy + Delta-G solvation = -26733.370847 eV Core-core repulsion = 22848.095642 eV Total energy + Delta-G solvation = -3885.275205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.88496 -40.53056 -36.93841 -36.44209 -36.27615 -35.54430 -32.34331 -31.74576 -29.75964 -28.74275 -26.80639 -25.81324 -25.30108 -23.50782 -22.75119 -21.67208 -19.65510 -19.12172 -17.77322 -17.24121 -16.27722 -16.20433 -16.11586 -15.66485 -15.51349 -15.36558 -15.08821 -14.80254 -14.13487 -13.82824 -13.69150 -13.17103 -13.13640 -12.61220 -12.53456 -12.52108 -12.41594 -12.24431 -11.94202 -11.89955 -11.71144 -11.25989 -11.14341 -11.07206 -10.92003 -10.80910 -10.58137 -10.41501 -10.36851 -10.16801 -9.75014 -9.62447 -8.86996 -8.79324 -8.46570 -8.01762 -6.09866 -4.22347 0.46159 1.05694 1.17270 2.67982 3.22407 3.29994 3.32091 3.43666 3.96620 4.11274 4.13382 4.30880 4.32406 4.57327 4.81147 4.88791 4.93753 4.99707 5.15059 5.23206 5.40036 5.48389 5.54885 5.58925 5.68824 5.72497 5.93056 6.07837 6.14031 6.23859 6.24090 6.42841 6.59958 6.69238 6.79346 6.85056 6.93812 7.22005 7.40720 7.61337 7.89653 8.00867 8.24373 8.76003 9.43567 10.91608 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.004122 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.493909 B = 6790.831668 C = 7393.076277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.165 4.165 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.572 4.572 13 S 2.583 3.417 14 O -0.946 6.946 15 O -0.945 6.945 16 N -0.943 5.943 17 C 0.111 3.889 18 C -0.078 4.078 19 C -0.152 4.152 20 C -0.049 4.049 21 C -0.185 4.185 22 C 0.134 3.866 23 F -0.135 7.135 24 C -0.192 4.192 25 C 0.202 3.798 26 H 0.026 0.974 27 H 0.097 0.903 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.110 -6.520 17.051 18.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.223 4.223 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.707 4.707 13 S 2.685 3.315 14 O -0.937 6.937 15 O -0.935 6.935 16 N -0.763 5.763 17 C -0.014 4.014 18 C -0.117 4.117 19 C -0.157 4.157 20 C -0.068 4.068 21 C -0.205 4.205 22 C 0.114 3.886 23 F -0.113 7.113 24 C -0.215 4.215 25 C 0.104 3.896 26 H 0.045 0.955 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.330 -5.562 16.918 18.327 hybrid contribution 0.815 -0.781 -1.262 1.693 sum 5.145 -6.343 15.656 17.658 Atomic orbital electron populations 1.22294 0.96777 1.00734 1.02398 1.17980 0.92917 0.92315 0.88775 1.22294 0.99892 0.97642 1.02434 1.20903 1.31964 1.12206 0.89196 0.92214 1.24934 0.94813 0.94938 0.98962 1.69792 1.36192 1.22460 1.23633 0.86508 0.79219 0.79377 0.82396 1.20580 1.21044 1.19903 1.30534 1.11605 1.12837 1.15721 1.06347 0.74818 0.75100 0.75209 1.93566 1.28440 1.86245 1.85415 1.93546 1.77639 1.37073 1.85288 1.56846 1.25453 1.45524 1.48447 1.21943 0.96620 0.87304 0.95485 1.21064 0.92447 0.98811 0.99330 1.20195 0.97449 0.99420 0.98637 1.20149 0.91178 0.97251 0.98188 1.20938 1.01866 0.97653 1.00051 1.17153 0.86928 0.88360 0.96110 1.91517 1.64498 1.62433 1.92879 1.20924 0.93351 1.01880 1.05329 1.17688 0.85254 0.94117 0.92585 0.95510 0.88419 0.94337 0.94282 0.88424 0.95431 0.92630 0.85991 0.86044 0.89686 0.89210 0.89023 0.89130 0.84820 0.84469 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 7.78 37.16 0.29 -3.67 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 4 C -0.50 -13.00 8.01 -34.44 -0.28 -13.28 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.74 9.35 55.43 0.52 -23.22 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C -0.57 -11.06 5.12 37.15 0.19 -10.87 16 13 S 2.58 48.16 4.59 -107.50 -0.49 47.66 16 14 O -0.95 -19.35 15.18 -57.54 -0.87 -20.22 16 15 O -0.94 -19.57 12.87 -57.54 -0.74 -20.31 16 16 N -0.94 -14.07 3.40 -58.12 -0.20 -14.26 16 17 C 0.11 1.23 7.08 -3.64 -0.03 1.20 16 18 C -0.08 -0.68 6.94 -27.23 -0.19 -0.86 16 19 C -0.15 -1.72 6.23 -104.24 -0.65 -2.37 16 20 C -0.05 -0.47 10.03 -39.61 -0.40 -0.86 16 21 C -0.18 -1.95 10.04 -39.49 -0.40 -2.35 16 22 C 0.13 1.82 7.28 -39.54 -0.29 1.54 16 23 F -0.13 -1.91 17.26 2.25 0.04 -1.87 16 24 C -0.19 -2.97 9.35 -39.13 -0.37 -3.33 16 25 C 0.20 2.94 6.59 -83.67 -0.55 2.38 16 26 H 0.03 0.61 5.46 -51.93 -0.28 0.32 16 27 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 2.55 6.07 -51.93 -0.32 2.24 16 31 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 32 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 34 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.16 2.71 6.11 -52.49 -0.32 2.39 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -30.94 337.88 -9.51 -40.45 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.29 Total: 3.98 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -2.54 Total: -32.66 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.32 Total: -37.49 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.61 Total: -40.53 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 48.16 SS G_CDS: -0.49 Total: 47.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.94 -9.51 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295634103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.370 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds