Wall clock time and date at job start Tue Mar 31 2020 14:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52999 * 109.46740 * 2 1 4 4 C 1.50699 * 109.46959 * 240.00513 * 2 1 3 5 5 H 1.08002 * 119.99457 * 239.99624 * 4 2 1 6 6 C 1.37877 * 120.00494 * 59.99717 * 4 2 1 7 7 N 1.31514 * 119.99711 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46998 * 90.00304 * 8 6 4 10 10 H 1.48500 * 109.46844 * 210.00182 * 8 6 4 11 11 H 1.48502 * 109.47111 * 330.00300 * 8 6 4 12 12 C 1.52993 * 109.46936 * 120.00005 * 2 1 3 13 13 S 1.81395 * 109.47682 * 300.00059 * 12 2 1 14 14 O 1.42101 * 110.54058 * 68.37548 * 13 12 2 15 15 O 1.42100 * 110.54448 * 291.63008 * 13 12 2 16 16 N 1.65593 * 104.45445 * 180.02562 * 13 12 2 17 17 C 1.46532 * 124.95462 * 270.00561 * 16 13 12 18 18 C 1.53748 * 105.19206 * 180.02562 * 17 16 13 19 19 C 1.51232 * 104.53634 * 359.97438 * 18 17 16 20 20 C 1.38194 * 130.95121 * 180.02562 * 19 18 17 21 21 C 1.38195 * 120.18101 * 179.74027 * 20 19 18 22 22 C 1.38537 * 119.80498 * 0.50999 * 21 20 19 23 23 F 1.35104 * 119.90865 * 179.76384 * 22 21 20 24 24 C 1.38039 * 120.17660 * 359.49137 * 22 21 20 25 25 C 1.38622 * 108.53179 * 359.97438 * 19 18 17 26 26 H 1.09000 * 109.47211 * 299.99745 * 1 2 3 27 27 H 1.09000 * 109.46869 * 60.00157 * 1 2 3 28 28 H 1.09000 * 109.46592 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46744 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47572 * 300.00053 * 3 2 1 31 31 H 1.09000 * 109.47060 * 60.00163 * 3 2 1 32 32 H 0.96998 * 119.99991 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47280 * 179.97438 * 12 2 1 34 34 H 1.09005 * 109.47174 * 60.00066 * 12 2 1 35 35 H 1.09000 * 110.30559 * 61.08737 * 17 16 13 36 36 H 1.09008 * 110.38231 * 298.98487 * 17 16 13 37 37 H 1.09001 * 110.41939 * 241.23464 * 18 17 16 38 38 H 1.08996 * 110.42766 * 118.75787 * 18 17 16 39 39 H 1.07991 * 119.90816 * 359.97438 * 20 19 18 40 40 H 1.07993 * 120.09700 * 180.27490 * 21 20 19 41 41 H 1.08001 * 119.86868 * 180.27443 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6310 -1.7564 -3.7120 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1338 2.7304 14 8 0.0281 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0542 -0.7401 3.9935 17 6 1.3876 -1.8769 4.6342 18 6 2.3522 -2.3398 5.7383 19 6 3.5302 -1.3972 5.6327 20 6 4.7016 -1.3263 6.3624 21 6 5.6462 -0.3614 6.0680 22 6 5.4112 0.5427 5.0450 23 9 6.3311 1.4899 4.7585 24 6 4.2422 0.4750 4.3140 25 6 3.2872 -0.5019 4.6027 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7089 1.1615 -3.4844 33 1 3.1301 -0.7217 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 1.2273 -2.6775 3.9120 36 1 0.4378 -1.5646 5.0686 37 1 2.6702 -3.3669 5.5594 38 1 1.8807 -2.2515 6.7170 39 1 4.8811 -2.0291 7.1624 40 1 6.5631 -0.3100 6.6362 41 1 4.0662 1.1796 3.5146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295634103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:36 Heat of formation + Delta-G solvation = -101.042508 kcal Electronic energy + Delta-G solvation = -26734.161004 eV Core-core repulsion = 22848.095642 eV Total energy + Delta-G solvation = -3886.065362 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.92346 -41.45238 -38.44947 -38.24303 -37.29881 -37.10392 -33.70155 -33.24223 -30.71186 -29.61386 -28.47861 -27.77614 -27.30737 -24.41710 -23.71245 -22.56054 -21.41253 -20.42780 -19.15927 -18.28057 -18.00740 -17.44605 -17.21511 -16.98188 -16.67742 -16.64065 -16.51643 -16.21370 -15.27808 -15.08177 -14.83130 -14.60518 -14.57072 -14.50998 -14.00387 -13.59270 -13.42569 -13.32305 -13.25140 -13.11707 -12.94413 -12.86846 -12.77327 -12.70580 -12.61297 -12.27739 -12.20191 -12.09967 -11.94796 -11.65755 -11.53523 -11.27732 -10.69325 -10.46177 -9.79078 -8.97639 -8.07711 -6.26887 -0.98532 0.13444 0.24084 1.41104 1.42231 1.44196 1.52925 2.40657 2.48919 2.70706 2.87632 2.97897 3.15293 3.45731 3.64161 3.86424 3.97061 4.00210 4.04203 4.16081 4.20608 4.38216 4.49139 4.60244 4.74064 4.76997 4.80649 4.87863 4.98517 4.99087 5.07058 5.10918 5.18335 5.24353 5.26977 5.29684 5.43128 5.48706 5.59510 5.89713 5.94060 6.03613 6.27201 6.77085 7.41794 8.92463 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.016242 B = 0.004122 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.493909 B = 6790.831668 C = 7393.076277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.071 3.929 3 C -0.161 4.161 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.020 3.980 7 N -0.907 5.907 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.269 1.269 12 C -0.577 4.577 13 S 2.605 3.395 14 O -0.968 6.968 15 O -0.975 6.975 16 N -0.943 5.943 17 C 0.090 3.910 18 C -0.069 4.069 19 C -0.141 4.141 20 C -0.036 4.036 21 C -0.170 4.170 22 C 0.110 3.890 23 F -0.147 7.147 24 C -0.223 4.223 25 C 0.168 3.832 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.183 0.817 40 H 0.168 0.832 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.169 -9.600 19.616 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 C -0.218 4.218 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.180 4.180 7 N -0.546 5.546 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.710 4.710 13 S 2.706 3.294 14 O -0.959 6.959 15 O -0.965 6.965 16 N -0.766 5.766 17 C -0.032 4.032 18 C -0.107 4.107 19 C -0.146 4.146 20 C -0.054 4.054 21 C -0.190 4.190 22 C 0.090 3.910 23 F -0.125 7.125 24 C -0.246 4.246 25 C 0.070 3.930 26 H 0.049 0.951 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.200 0.800 40 H 0.186 0.814 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.389 -8.645 19.474 21.977 hybrid contribution 0.527 0.164 -1.937 2.014 sum 5.917 -8.481 17.537 20.359 Atomic orbital electron populations 1.22210 0.97290 1.00812 1.01410 1.17952 0.92657 0.92044 0.90522 1.22221 0.99726 0.98453 1.01442 1.21237 1.31937 1.12410 0.90220 0.91885 1.25675 0.95071 0.95598 1.01679 1.69932 1.37054 1.23548 1.24017 0.85584 0.78877 0.78296 0.79054 1.20032 1.21207 1.19310 1.30445 1.12217 1.13652 1.14681 1.05323 0.74045 0.74622 0.75385 1.93524 1.29823 1.86609 1.85924 1.93509 1.78002 1.39237 1.85797 1.56380 1.26254 1.46540 1.47463 1.22436 0.97390 0.86519 0.96875 1.21207 0.90504 0.99451 0.99517 1.20658 0.98603 0.98451 0.96875 1.20686 0.89530 0.96954 0.98222 1.21365 1.03118 0.96155 0.98315 1.17453 0.86542 0.89459 0.97512 1.91479 1.64744 1.63146 1.93177 1.20879 0.95220 1.02641 1.05853 1.17935 0.85066 0.95493 0.94458 0.95070 0.90783 0.93630 0.94360 0.90722 0.95026 0.92784 0.85106 0.83853 0.87931 0.88960 0.85833 0.86360 0.80023 0.81401 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.86 7.78 71.99 0.56 -7.30 16 2 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 3 C -0.16 -8.13 7.77 71.98 0.56 -7.57 16 4 C -0.52 -27.04 8.01 25.60 0.21 -26.83 16 5 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 6 C 0.02 1.03 5.15 84.65 0.44 1.47 16 7 N -0.91 -50.12 9.35 21.45 0.20 -49.92 16 8 Si 0.96 42.00 29.54 68.60 2.03 44.03 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 C -0.58 -22.37 5.12 71.98 0.37 -22.00 16 13 S 2.60 98.59 4.59 -56.49 -0.26 98.33 16 14 O -0.97 -39.89 15.18 -127.65 -1.94 -41.82 16 15 O -0.98 -42.36 12.87 -127.65 -1.64 -44.01 16 16 N -0.94 -27.28 3.40 -337.80 -1.15 -28.43 16 17 C 0.09 1.76 7.08 86.63 0.61 2.37 16 18 C -0.07 -0.85 6.94 30.27 0.21 -0.64 16 19 C -0.14 -2.65 6.23 -19.61 -0.12 -2.77 16 20 C -0.04 -0.50 10.03 22.25 0.22 -0.28 16 21 C -0.17 -3.02 10.04 22.33 0.22 -2.80 16 22 C 0.11 2.95 7.28 22.29 0.16 3.11 16 23 F -0.15 -4.26 17.26 44.97 0.78 -3.48 16 24 C -0.22 -7.08 9.35 22.56 0.21 -6.87 16 25 C 0.17 4.71 6.59 38.34 0.25 4.96 16 26 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 27 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 4.10 6.07 -2.39 -0.01 4.08 16 31 H 0.03 1.52 5.46 -2.39 -0.01 1.51 16 32 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.13 4.76 8.14 -2.39 -0.02 4.74 16 34 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.18 0.88 8.06 -2.92 -0.02 0.86 16 40 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.13 4.74 6.11 -2.91 -0.02 4.72 16 Total: -1.00 -70.49 337.88 2.94 -67.55 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 1.05 Total: 19.49 kcal Atomic # 6 Polarization: -65.62 SS G_CDS: 3.88 Total: -61.74 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -0.95 Total: -78.35 kcal Atomic # 8 Polarization: -82.25 SS G_CDS: -3.58 Total: -85.83 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 98.59 SS G_CDS: -0.26 Total: 98.33 kcal Total: -70.49 2.94 -67.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295634103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds