Wall clock time and date at job start Tue Mar 31 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47054 * 2 1 4 4 C 1.50703 * 109.46925 * 239.99829 * 2 1 3 5 5 H 1.08003 * 119.99899 * 237.69574 * 4 2 1 6 6 C 1.37882 * 119.99995 * 57.69560 * 4 2 1 7 7 N 1.31521 * 119.99634 * 6.58404 * 6 4 2 8 8 Si 1.86796 * 119.99825 * 186.58072 * 6 4 2 9 9 H 1.48495 * 109.47068 * 84.99935 * 8 6 4 10 10 H 1.48505 * 109.46929 * 204.99665 * 8 6 4 11 11 H 1.48503 * 109.47266 * 324.99327 * 8 6 4 12 12 C 1.53005 * 109.47084 * 120.00071 * 2 1 3 13 13 S 1.81396 * 109.46884 * 299.99879 * 12 2 1 14 14 O 1.42101 * 110.54605 * 68.37464 * 13 12 2 15 15 O 1.42099 * 110.54534 * 291.62499 * 13 12 2 16 16 N 1.65607 * 104.44748 * 180.02562 * 13 12 2 17 17 C 1.46527 * 124.96739 * 269.97580 * 16 13 12 18 18 C 1.53742 * 105.19394 * 180.02562 * 17 16 13 19 19 C 1.51233 * 104.55940 * 359.75775 * 18 17 16 20 20 C 1.38196 * 130.94688 * 179.54460 * 19 18 17 21 21 C 1.38407 * 120.12613 * 180.39298 * 20 19 18 22 22 F 1.35109 * 120.10359 * 180.25273 * 21 20 19 23 23 C 1.38476 * 119.78569 * 0.28275 * 21 20 19 24 24 C 1.37842 * 120.20350 * 359.97315 * 23 21 20 25 25 C 1.38563 * 108.54919 * 0.41105 * 19 18 17 26 26 H 1.08996 * 109.46972 * 306.67106 * 1 2 3 27 27 H 1.09003 * 109.46853 * 66.66966 * 1 2 3 28 28 H 1.09004 * 109.47387 * 186.67033 * 1 2 3 29 29 H 1.09003 * 109.46711 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46976 * 299.99778 * 3 2 1 31 31 H 1.08999 * 109.47376 * 60.00259 * 3 2 1 32 32 H 0.96999 * 119.99097 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.46730 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.46851 * 59.99767 * 12 2 1 35 35 H 1.09007 * 110.30345 * 298.92781 * 17 16 13 36 36 H 1.08998 * 110.30155 * 61.06938 * 17 16 13 37 37 H 1.08999 * 110.41945 * 118.76296 * 18 17 16 38 38 H 1.08998 * 110.41888 * 241.11211 * 18 17 16 39 39 H 1.07998 * 119.93417 * 0.67375 * 20 19 18 40 40 H 1.07995 * 119.89780 * 179.97438 * 23 21 20 41 41 H 1.07997 * 119.84254 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6836 -1.5664 -1.1318 6 6 1.6605 -0.2678 -2.4822 7 7 0.9755 0.8479 -2.6085 8 14 2.1296 -1.2526 -3.9986 9 1 1.1191 -2.3157 -4.2305 10 1 2.1797 -0.3515 -5.1780 11 1 3.4629 -1.8732 -3.7929 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0182 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0542 -0.7400 3.9936 17 6 1.3876 -1.8765 4.6348 18 6 2.3525 -2.3392 5.7386 19 6 3.5334 -1.4008 5.6292 20 6 4.7022 -1.3264 6.3629 21 6 5.6452 -0.3563 6.0708 22 9 6.7900 -0.2873 6.7851 23 6 5.4113 0.5436 5.0447 24 6 4.2440 0.4749 4.3148 25 6 3.2881 -0.5012 4.6043 26 1 -0.3633 0.6137 0.8242 27 1 -0.3633 0.4070 -0.9437 28 1 -0.3634 -1.0207 0.1194 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7143 1.1594 -3.4892 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.4388 -1.5621 5.0700 36 1 1.2265 -2.6770 3.9128 37 1 1.8813 -2.2506 6.7175 38 1 2.6684 -3.3672 5.5611 39 1 4.8821 -2.0295 7.1627 40 1 6.1456 1.3015 4.8155 41 1 4.0677 1.1794 3.5154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296145707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:39 Heat of formation + Delta-G solvation = -83.469147 kcal Electronic energy + Delta-G solvation = -26581.132124 eV Core-core repulsion = 22695.828800 eV Total energy + Delta-G solvation = -3885.303324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.88056 -40.52851 -36.94286 -36.43607 -36.24276 -35.54567 -32.48208 -31.76320 -29.23901 -29.19403 -26.80658 -25.82993 -25.31098 -23.46760 -22.73506 -21.74464 -19.63804 -19.03207 -17.72823 -17.25738 -16.69001 -16.27317 -16.15006 -15.59767 -15.54584 -15.17333 -15.07167 -14.77950 -14.09380 -13.76665 -13.25955 -13.15488 -13.08929 -12.97769 -12.62941 -12.57354 -12.49589 -12.26609 -12.14141 -11.83430 -11.66789 -11.28242 -11.13065 -11.08039 -10.87836 -10.80318 -10.54888 -10.42299 -10.36070 -10.15252 -9.77223 -9.61486 -9.08971 -8.85572 -8.45602 -7.87908 -6.11669 -4.23588 0.47097 1.07930 1.11902 2.71379 3.21938 3.29268 3.30735 3.43523 3.92562 4.10343 4.15572 4.30666 4.35202 4.55495 4.72932 4.87285 4.92976 5.06787 5.13018 5.18767 5.39175 5.48007 5.53132 5.62780 5.67370 5.72029 5.88177 6.01577 6.17951 6.23531 6.30586 6.40831 6.57196 6.66971 6.78559 6.84682 6.92617 7.20255 7.37689 7.60028 7.87951 8.00082 8.23923 8.74675 9.42071 10.89558 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.003788 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.247536 B = 7389.149210 C = 7905.047854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 C -0.165 4.165 4 C -0.504 4.504 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 C -0.573 4.573 13 S 2.586 3.414 14 O -0.947 6.947 15 O -0.946 6.946 16 N -0.945 5.945 17 C 0.112 3.888 18 C -0.080 4.080 19 C -0.114 4.114 20 C -0.111 4.111 21 C 0.064 3.936 22 F -0.142 7.142 23 C -0.116 4.116 24 C -0.125 4.125 25 C 0.165 3.835 26 H 0.025 0.975 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 -5.560 15.864 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 C -0.223 4.223 4 C -0.543 4.543 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.708 4.708 13 S 2.688 3.312 14 O -0.938 6.938 15 O -0.937 6.937 16 N -0.765 5.765 17 C -0.013 4.013 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.130 4.130 21 C 0.043 3.957 22 F -0.121 7.121 23 C -0.135 4.135 24 C -0.146 4.146 25 C 0.067 3.933 26 H 0.044 0.956 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.938 -4.638 15.773 16.905 hybrid contribution 0.783 -1.051 -1.012 1.656 sum 4.721 -5.689 14.761 16.509 Atomic orbital electron populations 1.22230 0.96863 0.99719 1.03135 1.17981 0.92811 0.92408 0.88820 1.22326 0.99874 0.97590 1.02475 1.20898 1.30295 1.13922 0.89214 0.92198 1.24935 0.94971 0.94807 0.98920 1.69807 1.38343 1.20091 1.23688 0.86538 0.78920 0.79951 0.82183 1.20481 1.21115 1.19954 1.30550 1.11605 1.12826 1.15802 1.06248 0.74782 0.75050 0.75166 1.93569 1.28496 1.86263 1.85469 1.93535 1.77683 1.37106 1.85338 1.56825 1.25662 1.45561 1.48432 1.21918 0.96542 0.87449 0.95351 1.21096 0.92284 0.98884 0.99557 1.19894 0.96196 0.98508 0.97328 1.20220 0.92633 0.99113 1.01069 1.17365 0.84170 0.99249 0.94876 1.91481 1.47535 1.96062 1.77040 1.20859 0.98074 0.99391 0.95169 1.20971 0.92192 0.98743 1.02700 1.18127 0.85990 0.95543 0.93683 0.95607 0.88530 0.94483 0.94314 0.88219 0.95524 0.92601 0.85992 0.86089 0.89254 0.89710 0.88951 0.88884 0.84654 0.83991 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 7.58 37.16 0.28 -3.56 16 2 C 0.08 1.93 0.52 -155.66 -0.08 1.85 16 3 C -0.16 -3.92 7.79 37.16 0.29 -3.63 16 4 C -0.50 -12.86 8.01 -34.44 -0.28 -13.13 16 5 H 0.06 1.49 7.75 -52.48 -0.41 1.08 16 6 C 0.07 1.71 5.09 -17.81 -0.09 1.62 16 7 N -0.88 -23.45 9.39 55.43 0.52 -22.93 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 C -0.57 -10.85 5.12 37.16 0.19 -10.66 16 13 S 2.59 47.07 4.59 -107.50 -0.49 46.57 16 14 O -0.95 -19.13 15.33 -57.54 -0.88 -20.01 16 15 O -0.95 -18.90 12.87 -57.54 -0.74 -19.64 16 16 N -0.94 -13.80 3.40 -58.10 -0.20 -13.99 16 17 C 0.11 1.23 7.08 -3.64 -0.03 1.21 16 18 C -0.08 -0.70 6.94 -27.24 -0.19 -0.89 16 19 C -0.11 -1.32 6.23 -104.26 -0.65 -1.97 16 20 C -0.11 -1.19 10.02 -39.53 -0.40 -1.58 16 21 C 0.06 0.76 7.31 -39.43 -0.29 0.47 16 22 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 23 C -0.12 -1.41 10.00 -39.64 -0.40 -1.80 16 24 C -0.12 -1.76 9.37 -39.20 -0.37 -2.13 16 25 C 0.16 2.32 6.59 -83.61 -0.55 1.77 16 26 H 0.03 0.58 5.96 -51.93 -0.31 0.27 16 27 H 0.10 2.48 5.99 -51.93 -0.31 2.17 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 2.57 6.01 -51.93 -0.31 2.26 16 31 H 0.03 0.59 5.46 -51.93 -0.28 0.31 16 32 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 35 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.16 2.37 6.11 -52.49 -0.32 2.05 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -30.26 338.21 -9.54 -39.80 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.31 Total: 4.08 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -2.55 Total: -32.45 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.32 Total: -36.92 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.62 Total: -39.65 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 47.07 SS G_CDS: -0.49 Total: 46.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.26 -9.54 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296145707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.673 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds