Wall clock time and date at job start Tue Mar 31 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47054 * 2 1 4 4 C 1.50703 * 109.46925 * 239.99829 * 2 1 3 5 5 H 1.08003 * 119.99899 * 237.69574 * 4 2 1 6 6 C 1.37882 * 119.99995 * 57.69560 * 4 2 1 7 7 N 1.31521 * 119.99634 * 6.58404 * 6 4 2 8 8 Si 1.86796 * 119.99825 * 186.58072 * 6 4 2 9 9 H 1.48495 * 109.47068 * 84.99935 * 8 6 4 10 10 H 1.48505 * 109.46929 * 204.99665 * 8 6 4 11 11 H 1.48503 * 109.47266 * 324.99327 * 8 6 4 12 12 C 1.53005 * 109.47084 * 120.00071 * 2 1 3 13 13 S 1.81396 * 109.46884 * 299.99879 * 12 2 1 14 14 O 1.42101 * 110.54605 * 68.37464 * 13 12 2 15 15 O 1.42099 * 110.54534 * 291.62499 * 13 12 2 16 16 N 1.65607 * 104.44748 * 180.02562 * 13 12 2 17 17 C 1.46527 * 124.96739 * 269.97580 * 16 13 12 18 18 C 1.53742 * 105.19394 * 180.02562 * 17 16 13 19 19 C 1.51233 * 104.55940 * 359.75775 * 18 17 16 20 20 C 1.38196 * 130.94688 * 179.54460 * 19 18 17 21 21 C 1.38407 * 120.12613 * 180.39298 * 20 19 18 22 22 F 1.35109 * 120.10359 * 180.25273 * 21 20 19 23 23 C 1.38476 * 119.78569 * 0.28275 * 21 20 19 24 24 C 1.37842 * 120.20350 * 359.97315 * 23 21 20 25 25 C 1.38563 * 108.54919 * 0.41105 * 19 18 17 26 26 H 1.08996 * 109.46972 * 306.67106 * 1 2 3 27 27 H 1.09003 * 109.46853 * 66.66966 * 1 2 3 28 28 H 1.09004 * 109.47387 * 186.67033 * 1 2 3 29 29 H 1.09003 * 109.46711 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46976 * 299.99778 * 3 2 1 31 31 H 1.08999 * 109.47376 * 60.00259 * 3 2 1 32 32 H 0.96999 * 119.99097 * 179.97438 * 7 6 4 33 33 H 1.08993 * 109.46730 * 179.97438 * 12 2 1 34 34 H 1.08999 * 109.46851 * 59.99767 * 12 2 1 35 35 H 1.09007 * 110.30345 * 298.92781 * 17 16 13 36 36 H 1.08998 * 110.30155 * 61.06938 * 17 16 13 37 37 H 1.08999 * 110.41945 * 118.76296 * 18 17 16 38 38 H 1.08998 * 110.41888 * 241.11211 * 18 17 16 39 39 H 1.07998 * 119.93417 * 0.67375 * 20 19 18 40 40 H 1.07995 * 119.89780 * 179.97438 * 23 21 20 41 41 H 1.07997 * 119.84254 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6836 -1.5664 -1.1318 6 6 1.6605 -0.2678 -2.4822 7 7 0.9755 0.8479 -2.6085 8 14 2.1296 -1.2526 -3.9986 9 1 1.1191 -2.3157 -4.2305 10 1 2.1797 -0.3515 -5.1780 11 1 3.4629 -1.8732 -3.7929 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0182 2.8544 15 8 2.0480 1.4100 2.8544 16 7 2.0542 -0.7400 3.9936 17 6 1.3876 -1.8765 4.6348 18 6 2.3525 -2.3392 5.7386 19 6 3.5334 -1.4008 5.6292 20 6 4.7022 -1.3264 6.3629 21 6 5.6452 -0.3563 6.0708 22 9 6.7900 -0.2873 6.7851 23 6 5.4113 0.5436 5.0447 24 6 4.2440 0.4749 4.3148 25 6 3.2881 -0.5012 4.6043 26 1 -0.3633 0.6137 0.8242 27 1 -0.3633 0.4070 -0.9437 28 1 -0.3634 -1.0207 0.1194 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7143 1.1594 -3.4892 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.4388 -1.5621 5.0700 36 1 1.2265 -2.6770 3.9128 37 1 1.8813 -2.2506 6.7175 38 1 2.6684 -3.3672 5.5611 39 1 4.8821 -2.0295 7.1627 40 1 6.1456 1.3015 4.8155 41 1 4.0677 1.1794 3.5154 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296145707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:39 Heat of formation + Delta-G solvation = -100.482400 kcal Electronic energy + Delta-G solvation = -26581.869874 eV Core-core repulsion = 22695.828800 eV Total energy + Delta-G solvation = -3886.041074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.80386 -41.45556 -38.40578 -38.20718 -37.26527 -37.06774 -33.68568 -33.38983 -30.17898 -30.08147 -28.43198 -27.74504 -27.28175 -24.36601 -23.72318 -22.62489 -21.37779 -20.31545 -19.07557 -18.21228 -17.98308 -17.66463 -17.40725 -16.93151 -16.66773 -16.59554 -16.29477 -16.15175 -15.21125 -14.98599 -14.82962 -14.56600 -14.48453 -14.07623 -13.92036 -13.85771 -13.47804 -13.39841 -13.28302 -13.15295 -12.99785 -12.93837 -12.85250 -12.73357 -12.57813 -12.27417 -12.18279 -12.04301 -11.80012 -11.62816 -11.50514 -11.21722 -10.68902 -10.41751 -9.96744 -8.86900 -8.06429 -6.24687 -0.94100 0.14925 0.18394 1.43925 1.45862 1.46524 1.53672 2.42081 2.47222 2.74267 2.91435 3.04516 3.16276 3.37133 3.62299 3.82696 3.93535 3.99696 4.11455 4.19229 4.19922 4.36386 4.52181 4.61393 4.73380 4.79048 4.79585 4.90973 4.95190 5.02433 5.03105 5.04437 5.12801 5.19396 5.32822 5.34099 5.43416 5.45738 5.61913 5.91830 5.93212 6.06688 6.30372 6.79225 7.43644 8.93383 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.003788 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.247536 B = 7389.149210 C = 7905.047854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 C -0.161 4.161 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.021 3.979 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.578 4.578 13 S 2.608 3.392 14 O -0.971 6.971 15 O -0.971 6.971 16 N -0.944 5.944 17 C 0.093 3.907 18 C -0.072 4.072 19 C -0.106 4.106 20 C -0.102 4.102 21 C 0.060 3.940 22 F -0.143 7.143 23 C -0.121 4.121 24 C -0.147 4.147 25 C 0.135 3.865 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -7.994 17.727 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 C -0.219 4.219 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.544 5.544 8 Si 0.780 3.220 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.193 1.193 12 C -0.711 4.711 13 S 2.709 3.291 14 O -0.961 6.961 15 O -0.962 6.962 16 N -0.767 5.767 17 C -0.030 4.030 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.121 4.121 21 C 0.040 3.960 22 F -0.121 7.121 23 C -0.140 4.140 24 C -0.168 4.168 25 C 0.037 3.963 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.111 0.889 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.186 0.814 40 H 0.173 0.827 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.747 -7.076 17.629 19.580 hybrid contribution 0.586 -0.290 -1.484 1.622 sum 5.333 -7.366 16.145 18.530 Atomic orbital electron populations 1.22156 0.97461 1.00059 1.01876 1.17957 0.92493 0.92250 0.90535 1.22249 0.99870 0.98241 1.01490 1.21233 1.30238 1.14050 0.90240 0.91892 1.25654 0.95138 0.95592 1.01549 1.69945 1.39203 1.21224 1.24015 0.85636 0.78801 0.78613 0.78982 1.20067 1.21319 1.19341 1.30466 1.12405 1.13551 1.14680 1.05253 0.73996 0.74609 0.75272 1.93530 1.29984 1.86635 1.85976 1.93500 1.77960 1.38947 1.85771 1.56385 1.26373 1.46503 1.47464 1.22382 0.97214 0.86783 0.96615 1.21230 0.90397 0.99472 0.99834 1.20226 0.97000 0.97985 0.95876 1.20533 0.91574 0.98835 1.01196 1.17508 0.84435 0.99447 0.94633 1.91484 1.47619 1.96081 1.76946 1.20985 0.97778 1.00015 0.95193 1.20941 0.93456 0.99249 1.03181 1.18392 0.85887 0.96815 0.95162 0.95355 0.90914 0.93589 0.94146 0.90661 0.94982 0.92803 0.84816 0.84055 0.88940 0.87887 0.86390 0.85912 0.81391 0.82718 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.60 7.58 71.98 0.55 -7.05 16 2 C 0.07 3.30 0.52 -52.93 -0.03 3.27 16 3 C -0.16 -7.85 7.79 71.98 0.56 -7.29 16 4 C -0.52 -26.45 8.01 25.60 0.20 -26.24 16 5 H 0.06 3.09 7.75 -2.91 -0.02 3.07 16 6 C 0.02 1.06 5.09 84.65 0.43 1.50 16 7 N -0.91 -49.24 9.39 21.45 0.20 -49.04 16 8 Si 0.95 41.34 29.54 68.60 2.03 43.36 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 C -0.58 -21.53 5.12 71.98 0.37 -21.16 16 13 S 2.61 94.36 4.59 -56.49 -0.26 94.10 16 14 O -0.97 -38.93 15.33 -127.65 -1.96 -40.89 16 15 O -0.97 -39.61 12.87 -127.65 -1.64 -41.25 16 16 N -0.94 -26.24 3.40 -337.72 -1.15 -27.39 16 17 C 0.09 1.79 7.08 86.62 0.61 2.40 16 18 C -0.07 -0.94 6.94 30.27 0.21 -0.73 16 19 C -0.11 -2.11 6.23 -19.63 -0.12 -2.23 16 20 C -0.10 -1.82 10.02 22.30 0.22 -1.60 16 21 C 0.06 1.29 7.31 22.37 0.16 1.46 16 22 F -0.14 -3.08 17.27 44.97 0.78 -2.31 16 23 C -0.12 -2.84 10.00 22.23 0.22 -2.62 16 24 C -0.15 -4.13 9.37 22.52 0.21 -3.92 16 25 C 0.13 3.61 6.59 38.30 0.25 3.86 16 26 H 0.03 1.30 5.96 -2.39 -0.01 1.29 16 27 H 0.07 3.84 5.99 -2.39 -0.01 3.82 16 28 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 4.03 6.01 -2.39 -0.01 4.02 16 31 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 32 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 33 H 0.13 4.59 8.14 -2.39 -0.02 4.57 16 34 H 0.14 4.58 8.14 -2.39 -0.02 4.56 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 41 H 0.14 4.34 6.11 -2.91 -0.02 4.32 16 Total: -1.00 -65.97 338.21 2.91 -63.06 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 1.05 Total: 20.70 kcal Atomic # 6 Polarization: -64.21 SS G_CDS: 3.86 Total: -60.35 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -0.95 Total: -76.43 kcal Atomic # 8 Polarization: -78.54 SS G_CDS: -3.60 Total: -82.14 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 94.36 SS G_CDS: -0.26 Total: 94.10 kcal Total: -65.97 2.91 -63.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296145707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.418 kcal (2) G-P(sol) polarization free energy of solvation -65.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds