Wall clock time and date at job start Tue Mar 31 2020 15:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 117.00097 * 2 1 4 4 N 1.32246 * 119.69053 * 359.72694 * 3 2 1 5 5 C 1.31952 * 121.66019 * 179.74822 * 4 3 2 6 6 C 1.38078 * 120.85400 * 0.53121 * 5 4 3 7 7 C 1.50705 * 120.34960 * 179.76298 * 6 5 4 8 8 N 1.46497 * 109.46962 * 269.97502 * 7 6 5 9 9 C 1.34777 * 119.99891 * 179.97438 * 8 7 6 10 10 O 1.21587 * 120.00168 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99900 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99935 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47394 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47516 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00222 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99998 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99925 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47276 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47206 * 209.99979 * 19 17 15 22 22 H 1.48498 * 109.47162 * 330.00033 * 19 17 15 23 23 C 1.38781 * 119.29948 * 359.73538 * 6 5 4 24 24 C 1.38502 * 118.47638 * 0.02562 * 23 6 5 25 25 Cl 1.73599 * 120.45615 * 180.02562 * 24 23 6 26 26 H 1.09004 * 109.47453 * 59.99452 * 1 2 3 27 27 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47255 * 299.99770 * 1 2 3 29 29 H 1.07997 * 119.57278 * 180.24303 * 5 4 3 30 30 H 1.08997 * 109.46891 * 29.97492 * 7 6 5 31 31 H 1.08999 * 109.46953 * 149.97501 * 7 6 5 32 32 H 0.97002 * 119.99941 * 0.02562 * 8 7 6 33 33 H 0.97003 * 119.99910 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.47296 * 300.00444 * 12 11 9 35 35 H 1.09003 * 109.47104 * 60.00290 * 12 11 9 36 36 H 1.09003 * 109.46681 * 300.00172 * 13 12 11 37 37 H 1.08996 * 109.46852 * 59.99805 * 13 12 11 38 38 H 1.08995 * 109.46715 * 300.00415 * 14 13 12 39 39 H 1.09003 * 109.46443 * 59.99896 * 14 13 12 40 40 H 0.97003 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.76257 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3188 2.3143 -0.0055 5 6 1.8771 3.5099 -0.0008 6 6 3.2507 3.6500 -0.0008 7 6 3.8763 5.0211 -0.0008 8 7 4.0795 5.4652 -1.3820 9 6 4.6291 6.6709 -1.6282 10 8 4.9568 7.3899 -0.7041 11 7 4.8155 7.0797 -2.8990 12 6 5.4135 8.3900 -3.1666 13 6 5.5127 8.6062 -4.6780 14 6 6.1378 9.9744 -4.9576 15 6 6.2361 10.1871 -6.4462 16 1 5.8872 9.4229 -7.1250 17 6 6.7715 11.3571 -6.9416 18 7 6.8568 11.5429 -8.2408 19 14 7.3755 12.6784 -5.7675 20 1 8.8088 12.4462 -5.4560 21 1 7.2163 14.0127 -6.3996 22 1 6.5818 12.6268 -4.5135 23 6 4.0492 2.5149 -0.0004 24 6 3.4334 1.2744 -0.0004 25 17 4.3825 -0.1792 0.0009 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2515 4.3903 -0.0015 30 1 3.2173 5.7211 0.5127 31 1 4.8366 4.9823 0.5134 32 1 3.8177 4.8918 -2.1193 33 1 4.5538 6.5062 -3.6362 34 1 4.7912 9.1698 -2.7277 35 1 6.4105 8.4308 -2.7279 36 1 6.1353 7.8262 -5.1165 37 1 4.5160 8.5651 -5.1171 38 1 5.5156 10.7545 -4.5190 39 1 7.1347 10.0149 -4.5185 40 1 7.2337 12.3659 -8.5893 41 1 5.1261 2.5971 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296362835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:40 Heat of formation + Delta-G solvation = -47.258082 kcal Electronic energy + Delta-G solvation = -23715.583428 eV Core-core repulsion = 19849.726589 eV Total energy + Delta-G solvation = -3865.856839 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37583 -39.92048 -38.65634 -37.08509 -35.89105 -34.99011 -33.36767 -32.85353 -31.75796 -31.04952 -28.24866 -27.29256 -25.93428 -24.17831 -23.03701 -22.34335 -20.97713 -20.31990 -19.06384 -18.37172 -18.01162 -16.99213 -16.68553 -16.43199 -15.97269 -15.70279 -15.26192 -14.96455 -14.62244 -14.38745 -14.22755 -14.15474 -13.83039 -13.71420 -13.13500 -12.73978 -12.68500 -12.51321 -12.37743 -11.99855 -11.90266 -11.76218 -11.56054 -11.07606 -10.89549 -10.46134 -10.33204 -10.24218 -10.02094 -9.83873 -9.69512 -9.36080 -9.23231 -8.98213 -8.72875 -8.55777 -6.06640 -4.05395 0.29760 0.46192 1.54833 2.40221 2.64249 3.10595 3.24746 3.31334 3.38945 3.43258 3.67153 3.97114 4.24103 4.32342 4.37392 4.44268 4.46661 4.77078 4.81661 4.98155 5.09987 5.15679 5.27527 5.31642 5.54254 5.57830 5.65323 5.68186 6.02438 6.24306 6.35572 6.45917 6.51061 6.66281 6.80668 6.92524 7.08428 7.22978 7.36317 7.75382 8.02387 8.49664 8.62562 8.97141 9.55612 11.06541 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.001721 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.163372 B =16269.927077 C =16340.231932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C 0.339 3.661 4 N -0.525 5.525 5 C 0.167 3.833 6 C -0.185 4.185 7 C 0.192 3.808 8 N -0.750 5.750 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.740 5.740 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C -0.012 4.012 24 C -0.113 4.113 25 Cl -0.040 7.040 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.171 0.829 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.396 0.604 33 H 0.396 0.604 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.962 -25.226 19.667 34.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.201 6.201 3 C 0.159 3.841 4 N -0.249 5.249 5 C 0.010 3.990 6 C -0.188 4.188 7 C 0.067 3.933 8 N -0.407 5.407 9 C 0.402 3.598 10 O -0.471 6.471 11 N -0.395 5.395 12 C 0.009 3.991 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.038 4.038 24 C -0.143 4.143 25 Cl -0.011 7.011 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.188 0.812 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.230 0.770 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.319 -24.895 20.390 34.457 hybrid contribution 0.813 0.208 -0.277 0.884 sum -11.506 -24.687 20.113 33.858 Atomic orbital electron populations 1.22969 0.76438 1.03501 1.02804 1.86333 1.23445 1.23479 1.86882 1.19601 0.87746 0.85699 0.91098 1.67587 1.39394 0.98377 1.19526 1.22583 0.92273 0.93879 0.90238 1.20765 0.94537 0.95845 1.07667 1.19789 1.00869 0.89412 0.83210 1.45175 1.68629 1.18795 1.08122 1.15971 0.78657 0.81324 0.83895 1.90930 1.57390 1.55308 1.43427 1.45339 1.67185 1.21450 1.05488 1.21527 0.97705 0.81867 0.97962 1.21709 1.01488 1.00653 0.91270 1.19501 0.95599 0.91933 0.97873 1.21095 1.41187 1.03633 0.90095 0.91030 1.25032 0.95271 0.98223 0.94994 1.69914 1.45866 1.26621 1.11793 0.86771 0.79631 0.81176 0.81699 1.20250 1.21385 1.18857 1.21411 1.01569 0.88873 0.91970 1.20879 0.89517 0.90239 1.13621 1.98396 1.70916 1.34804 1.96990 0.91883 0.88153 0.91948 0.81207 0.90075 0.90281 0.77039 0.77110 0.91904 0.91928 0.92156 0.92128 0.96264 0.96704 0.92705 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.38 101.05 1.05 1.25 16 2 O -0.30 -2.46 9.95 -18.82 -0.19 -2.64 16 3 C 0.34 2.92 7.49 -17.10 -0.13 2.79 16 4 N -0.53 -4.26 9.22 -13.30 -0.12 -4.38 16 5 C 0.17 1.09 10.85 -17.56 -0.19 0.90 16 6 C -0.18 -1.17 5.26 -104.48 -0.55 -1.72 16 7 C 0.19 1.45 5.82 -5.19 -0.03 1.42 16 8 N -0.75 -6.70 5.55 -66.41 -0.37 -7.07 16 9 C 0.70 9.46 8.57 -86.91 -0.74 8.71 16 10 O -0.59 -10.50 16.34 5.29 0.09 -10.41 16 11 N -0.74 -9.65 5.56 -65.23 -0.36 -10.01 16 12 C 0.13 2.14 5.67 -4.04 -0.02 2.12 16 13 C -0.11 -2.06 5.27 -26.73 -0.14 -2.20 16 14 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 15 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 16 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 19 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 C -0.01 -0.08 9.65 -39.28 -0.38 -0.46 16 24 C -0.11 -0.90 6.36 -39.21 -0.25 -1.15 16 25 Cl -0.04 -0.32 28.54 -51.86 -1.48 -1.80 16 26 H 0.06 0.34 8.10 -51.93 -0.42 -0.08 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.11 -51.93 -0.42 -0.10 16 29 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.40 2.68 8.48 -40.82 -0.35 2.33 16 33 H 0.40 4.08 8.49 -40.82 -0.35 3.73 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -34.45 369.09 -8.38 -42.83 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.69 Total: -0.34 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.93 Total: -1.84 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.08 Total: -48.32 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.10 Total: -13.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.48 Total: -1.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.45 -8.38 -42.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296362835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.425 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds