Wall clock time and date at job start Tue Mar 31 2020 15:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35705 * 117.00097 * 2 1 4 4 N 1.32246 * 119.69053 * 359.72694 * 3 2 1 5 5 C 1.31952 * 121.66019 * 179.74822 * 4 3 2 6 6 C 1.38078 * 120.85400 * 0.53121 * 5 4 3 7 7 C 1.50705 * 120.34960 * 179.76298 * 6 5 4 8 8 N 1.46497 * 109.46962 * 269.97502 * 7 6 5 9 9 C 1.34777 * 119.99891 * 179.97438 * 8 7 6 10 10 O 1.21587 * 120.00168 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99900 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99935 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47394 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47516 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99783 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00222 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99998 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99925 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47276 * 89.99971 * 19 17 15 21 21 H 1.48502 * 109.47206 * 209.99979 * 19 17 15 22 22 H 1.48498 * 109.47162 * 330.00033 * 19 17 15 23 23 C 1.38781 * 119.29948 * 359.73538 * 6 5 4 24 24 C 1.38502 * 118.47638 * 0.02562 * 23 6 5 25 25 Cl 1.73599 * 120.45615 * 180.02562 * 24 23 6 26 26 H 1.09004 * 109.47453 * 59.99452 * 1 2 3 27 27 H 1.09005 * 109.47515 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47255 * 299.99770 * 1 2 3 29 29 H 1.07997 * 119.57278 * 180.24303 * 5 4 3 30 30 H 1.08997 * 109.46891 * 29.97492 * 7 6 5 31 31 H 1.08999 * 109.46953 * 149.97501 * 7 6 5 32 32 H 0.97002 * 119.99941 * 0.02562 * 8 7 6 33 33 H 0.97003 * 119.99910 * 0.02562 * 11 9 8 34 34 H 1.08998 * 109.47296 * 300.00444 * 12 11 9 35 35 H 1.09003 * 109.47104 * 60.00290 * 12 11 9 36 36 H 1.09003 * 109.46681 * 300.00172 * 13 12 11 37 37 H 1.08996 * 109.46852 * 59.99805 * 13 12 11 38 38 H 1.08995 * 109.46715 * 300.00415 * 14 13 12 39 39 H 1.09003 * 109.46443 * 59.99896 * 14 13 12 40 40 H 0.97003 * 120.00038 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.76257 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 7 1.3188 2.3143 -0.0055 5 6 1.8771 3.5099 -0.0008 6 6 3.2507 3.6500 -0.0008 7 6 3.8763 5.0211 -0.0008 8 7 4.0795 5.4652 -1.3820 9 6 4.6291 6.6709 -1.6282 10 8 4.9568 7.3899 -0.7041 11 7 4.8155 7.0797 -2.8990 12 6 5.4135 8.3900 -3.1666 13 6 5.5127 8.6062 -4.6780 14 6 6.1378 9.9744 -4.9576 15 6 6.2361 10.1871 -6.4462 16 1 5.8872 9.4229 -7.1250 17 6 6.7715 11.3571 -6.9416 18 7 6.8568 11.5429 -8.2408 19 14 7.3755 12.6784 -5.7675 20 1 8.8088 12.4462 -5.4560 21 1 7.2163 14.0127 -6.3996 22 1 6.5818 12.6268 -4.5135 23 6 4.0492 2.5149 -0.0004 24 6 3.4334 1.2744 -0.0004 25 17 4.3825 -0.1792 0.0009 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2515 4.3903 -0.0015 30 1 3.2173 5.7211 0.5127 31 1 4.8366 4.9823 0.5134 32 1 3.8177 4.8918 -2.1193 33 1 4.5538 6.5062 -3.6362 34 1 4.7912 9.1698 -2.7277 35 1 6.4105 8.4308 -2.7279 36 1 6.1353 7.8262 -5.1165 37 1 4.5160 8.5651 -5.1171 38 1 5.5156 10.7545 -4.5190 39 1 7.1347 10.0149 -4.5185 40 1 7.2337 12.3659 -8.5893 41 1 5.1261 2.5971 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296362835.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:39 Heat of formation + Delta-G solvation = -73.441692 kcal Electronic energy + Delta-G solvation = -23716.718834 eV Core-core repulsion = 19849.726589 eV Total energy + Delta-G solvation = -3866.992246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.114 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93793 -40.92994 -39.23527 -37.67277 -37.11792 -35.97822 -35.10997 -33.64719 -33.12342 -31.98546 -29.15596 -28.42052 -26.78184 -24.72705 -24.49144 -23.09590 -22.21223 -21.75723 -19.59663 -19.40879 -18.90021 -18.56044 -17.54149 -17.18433 -16.83994 -16.70311 -16.29212 -15.85924 -15.75940 -15.37846 -15.31075 -15.11043 -14.75456 -14.62236 -14.29099 -14.06821 -13.75693 -13.48551 -13.28238 -13.09399 -12.81973 -12.69883 -12.65523 -12.25497 -12.14737 -11.90158 -11.75725 -11.56018 -11.35086 -11.29505 -10.89484 -10.82786 -10.74133 -10.35131 -9.73351 -9.54949 -8.27485 -6.31222 -0.25202 -0.08170 0.97637 1.38951 1.40578 1.52457 1.76492 1.91364 2.19620 2.38357 2.47917 3.08440 3.16745 3.37758 3.45081 3.74764 3.84762 3.93145 4.14838 4.26904 4.38455 4.41624 4.46228 4.55625 4.62224 4.70808 4.75835 4.94942 4.96599 5.02802 5.07526 5.15503 5.43665 5.47150 5.57301 5.60013 5.67677 5.98550 6.02879 6.29676 6.53977 6.77007 7.12007 7.33634 7.61251 8.88833 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.001721 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.163372 B =16269.927077 C =16340.231932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.310 6.310 3 C 0.327 3.673 4 N -0.537 5.537 5 C 0.169 3.831 6 C -0.176 4.176 7 C 0.195 3.805 8 N -0.731 5.731 9 C 0.701 3.299 10 O -0.635 6.635 11 N -0.734 5.734 12 C 0.147 3.853 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.003 3.997 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.246 1.246 23 C -0.006 4.006 24 C -0.126 4.126 25 Cl -0.045 7.045 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.062 0.938 29 H 0.191 0.809 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.410 0.590 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.265 0.735 41 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 -25.531 21.328 35.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.216 6.216 3 C 0.147 3.853 4 N -0.261 5.261 5 C 0.013 3.987 6 C -0.179 4.179 7 C 0.071 3.929 8 N -0.388 5.388 9 C 0.401 3.599 10 O -0.517 6.517 11 N -0.389 5.389 12 C 0.022 3.978 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.055 0.945 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.170 1.170 23 C -0.032 4.032 24 C -0.155 4.155 25 Cl -0.017 7.017 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.081 0.919 29 H 0.208 0.792 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.246 0.754 33 H 0.246 0.754 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.747 -25.275 22.045 35.878 hybrid contribution 0.865 0.206 -0.841 1.224 sum -11.881 -25.069 21.204 34.917 Atomic orbital electron populations 1.23145 0.75169 1.04960 1.02689 1.86316 1.24815 1.23653 1.86854 1.19807 0.88142 0.85992 0.91350 1.67635 1.39631 0.98691 1.20106 1.22943 0.92640 0.94043 0.89083 1.20568 0.94379 0.95046 1.07877 1.19819 1.01015 0.89893 0.82205 1.45021 1.67056 1.17345 1.09368 1.16067 0.78576 0.82061 0.83203 1.90906 1.59279 1.56880 1.44617 1.45061 1.66994 1.20669 1.06172 1.21128 0.97492 0.83260 0.95877 1.21474 1.01263 0.98050 0.92990 1.19471 0.96396 0.94819 0.94401 1.21478 1.40213 1.02699 0.92401 0.94464 1.25998 0.95700 1.00999 0.96670 1.70063 1.47488 1.27616 1.14003 0.85693 0.79540 0.77800 0.79850 1.19296 1.21149 1.16963 1.21580 1.02317 0.88413 0.90939 1.20987 0.89463 0.90489 1.14588 1.98390 1.70949 1.35259 1.97084 0.92045 0.85996 0.91940 0.79210 0.89758 0.90427 0.75447 0.75377 0.92613 0.92635 0.91810 0.91766 0.95998 0.96155 0.92571 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.38 113.37 1.18 1.51 16 2 O -0.31 -4.94 9.95 -90.25 -0.90 -5.84 16 3 C 0.33 5.31 7.49 84.81 0.63 5.94 16 4 N -0.54 -7.94 9.22 -308.85 -2.85 -10.78 16 5 C 0.17 1.85 10.85 84.64 0.92 2.76 16 6 C -0.18 -1.84 5.26 -19.77 -0.10 -1.94 16 7 C 0.19 2.48 5.82 85.64 0.50 2.98 16 8 N -0.73 -11.22 5.55 -482.29 -2.68 -13.90 16 9 C 0.70 17.43 8.57 179.05 1.53 18.96 16 10 O -0.64 -21.55 16.34 -3.99 -0.07 -21.62 16 11 N -0.73 -17.50 5.56 -478.54 -2.66 -20.16 16 12 C 0.15 4.48 5.67 86.38 0.49 4.97 16 13 C -0.10 -3.49 5.27 30.59 0.16 -3.33 16 14 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 15 C -0.53 -29.81 9.66 25.60 0.25 -29.57 16 16 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 19 Si 0.95 44.06 27.47 68.60 1.88 45.95 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 23 C -0.01 -0.07 9.65 22.46 0.22 0.14 16 24 C -0.13 -1.86 6.36 22.51 0.14 -1.72 16 25 Cl -0.05 -0.70 28.54 -2.72 -0.08 -0.78 16 26 H 0.06 0.61 8.10 -2.38 -0.02 0.59 16 27 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.59 8.11 -2.39 -0.02 0.57 16 29 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 30 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 31 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 32 H 0.41 4.32 8.48 -92.71 -0.79 3.54 16 33 H 0.41 7.39 8.49 -92.71 -0.79 6.60 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 39 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 40 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -74.49 369.09 -1.10 -75.59 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.56 Total: 9.52 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 6.50 Total: 0.90 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -7.89 Total: -103.73 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.96 Total: -27.46 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -74.49 -1.10 -75.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296362835.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.150 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds