Wall clock time and date at job start Tue Mar 31 2020 14:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36023 * 116.99978 * 2 1 4 4 C 1.38655 * 119.99313 * 359.72943 * 3 2 1 5 5 C 1.38129 * 120.03857 * 180.27110 * 4 3 2 6 6 C 1.38851 * 120.02026 * 359.97438 * 5 4 3 7 7 N 1.40108 * 120.00159 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99780 * 172.58427 * 7 6 5 9 9 O 1.21293 * 119.99843 * 5.03177 * 8 7 6 10 10 C 1.50695 * 119.99998 * 185.03799 * 8 7 6 11 11 S 1.81003 * 109.47361 * 184.85092 * 10 8 7 12 12 C 1.76201 * 100.00341 * 179.97438 * 11 10 8 13 13 H 1.08006 * 119.99654 * 0.02562 * 12 11 10 14 14 C 1.38795 * 120.00159 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99795 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99959 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46824 * 90.00340 * 16 14 12 18 18 H 1.48502 * 109.47155 * 209.99941 * 16 14 12 19 19 H 1.48495 * 109.47526 * 330.00084 * 16 14 12 20 20 C 1.46497 * 120.00287 * 352.58816 * 7 6 5 21 21 C 1.53005 * 109.47143 * 305.61090 * 20 7 6 22 22 C 1.53002 * 109.47143 * 65.60869 * 20 7 6 23 23 C 1.38830 * 119.98935 * 0.02562 * 6 5 4 24 24 C 1.38276 * 119.95776 * 359.97438 * 23 6 5 25 25 F 1.35099 * 120.00685 * 179.97438 * 24 23 6 26 26 H 1.08998 * 109.47170 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47008 * 300.00015 * 1 2 3 28 28 H 1.08998 * 109.47319 * 59.99593 * 1 2 3 29 29 H 1.07995 * 119.98243 * 0.24533 * 4 3 2 30 30 H 1.07998 * 119.98402 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46952 * 304.85060 * 10 8 7 32 32 H 1.09000 * 109.47873 * 64.85089 * 10 8 7 33 33 H 0.97005 * 120.00032 * 179.97438 * 15 14 12 34 34 H 1.08994 * 109.47433 * 185.61284 * 20 7 6 35 35 H 1.08994 * 109.46853 * 54.42552 * 21 20 7 36 36 H 1.08991 * 109.47219 * 174.42808 * 21 20 7 37 37 H 1.09003 * 109.46921 * 294.42929 * 21 20 7 38 38 H 1.08993 * 109.47282 * 66.04566 * 22 20 7 39 39 H 1.09001 * 109.46815 * 186.04358 * 22 20 7 40 40 H 1.08998 * 109.46887 * 306.04040 * 22 20 7 41 41 H 1.07996 * 120.01486 * 180.02562 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2913 2.3747 -0.0057 5 6 1.9174 3.6060 -0.0113 6 6 3.3039 3.6802 -0.0108 7 7 3.9386 4.9293 -0.0160 8 6 5.2756 5.0064 0.1351 9 8 5.9398 3.9926 0.1840 10 6 5.9453 6.3520 0.2435 11 16 7.7410 6.1301 0.2931 12 6 8.2539 7.8113 0.4162 13 1 7.5168 8.6003 0.4399 14 6 9.6050 8.1215 0.4839 15 7 10.5033 7.1597 0.4555 16 14 10.1487 9.9037 0.6152 17 1 10.2430 10.2883 2.0465 18 1 11.4769 10.0649 -0.0292 19 1 9.1585 10.7749 -0.0673 20 6 3.1490 6.1515 -0.1856 21 6 2.3088 6.0432 -1.4598 22 6 2.2252 6.3333 1.0204 23 6 4.0611 2.5166 -0.0051 24 6 3.4337 1.2845 0.0005 25 9 4.1696 0.1515 0.0055 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2128 2.3178 -0.0061 30 1 1.3282 4.5111 -0.0162 31 1 5.6782 6.9613 -0.6200 32 1 5.6155 6.8497 1.1554 33 1 11.4476 7.3765 0.5025 34 1 3.8180 7.0085 -0.2634 35 1 1.7119 5.1320 -1.4250 36 1 1.6488 6.9073 -1.5343 37 1 2.9675 6.0132 -2.3278 38 1 2.8240 6.5177 1.9122 39 1 1.5627 7.1812 0.8460 40 1 1.6307 5.4308 1.1620 41 1 5.1396 2.5739 -0.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299560471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:38 Heat of formation + Delta-G solvation = -57.341486 kcal Electronic energy + Delta-G solvation = -25563.794728 eV Core-core repulsion = 21679.624384 eV Total energy + Delta-G solvation = -3884.170344 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.66260 -41.13892 -39.60759 -37.60132 -36.29775 -32.49873 -32.34188 -30.66439 -30.51566 -28.47319 -27.47049 -27.21470 -25.54423 -23.10274 -22.60900 -22.11525 -19.89360 -18.30215 -17.99092 -17.38081 -17.22377 -16.26188 -16.21947 -15.62097 -15.54926 -15.07566 -15.02049 -14.85664 -14.30578 -14.24864 -13.93178 -13.58329 -13.55069 -13.25667 -13.13862 -12.87114 -12.60556 -12.34826 -12.29295 -12.18408 -11.88707 -11.66057 -11.57029 -11.30253 -11.11236 -11.07896 -10.83472 -10.59035 -9.88452 -9.79974 -9.14607 -9.12293 -8.86109 -8.33056 -7.64220 -6.58683 -6.27544 -3.99565 1.05155 1.18380 2.57554 2.73726 3.04672 3.18404 3.18861 3.26243 3.41766 3.57430 4.12793 4.21019 4.42174 4.52534 4.61532 4.81200 4.81651 4.87897 4.95821 4.98742 5.06866 5.08156 5.18909 5.25732 5.32279 5.40964 5.50776 5.55772 5.65119 5.71148 5.81919 5.83647 5.86566 5.95633 5.98884 6.04893 6.13306 6.37022 6.91278 7.21452 7.29184 7.53632 8.26264 8.28968 9.17781 10.79832 Molecular weight = 327.11amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.002976 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.262086 B = 9404.842466 C =10494.849386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.059 3.941 4 C -0.160 4.160 5 C -0.150 4.150 6 C 0.164 3.836 7 N -0.549 5.549 8 C 0.535 3.465 9 O -0.488 6.488 10 C -0.152 4.152 11 S -0.056 6.056 12 C -0.537 4.537 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.919 3.081 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.121 3.879 21 C -0.181 4.181 22 C -0.180 4.180 23 C -0.171 4.171 24 C 0.097 3.903 25 F -0.130 7.130 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.137 0.863 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.269 0.731 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.050 -5.286 -1.597 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.012 3.988 4 C -0.179 4.179 5 C -0.171 4.171 6 C 0.068 3.932 7 N -0.273 5.273 8 C 0.325 3.675 9 O -0.362 6.362 10 C -0.302 4.302 11 S 0.171 5.829 12 C -0.685 4.685 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.501 5.501 16 Si 0.746 3.254 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.197 1.197 20 C 0.019 3.981 21 C -0.239 4.239 22 C -0.238 4.238 23 C -0.191 4.191 24 C 0.076 3.924 25 F -0.109 7.109 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -22.693 -6.968 -1.606 23.793 hybrid contribution -0.673 2.293 0.147 2.394 sum -23.366 -4.675 -1.459 23.873 Atomic orbital electron populations 1.23044 0.78550 1.03907 1.01201 1.86144 1.21183 1.25988 1.89395 1.19005 0.90850 0.85485 1.03430 1.20825 0.99786 0.90872 1.06432 1.21163 0.92633 0.98377 1.04901 1.17533 0.91220 0.84705 0.99744 1.45792 1.07132 1.04997 1.69403 1.20645 0.80244 0.91972 0.74629 1.90321 1.62884 1.35858 1.47121 1.23604 1.06029 0.95435 1.05137 1.85456 0.89558 1.11615 1.96273 1.22828 0.94768 0.91881 1.59006 0.90831 1.24995 0.95485 0.98604 0.94446 1.70009 1.01577 1.32056 1.46469 0.86156 0.78130 0.82692 0.78457 1.20223 1.20711 1.19668 1.21430 0.94080 0.86710 0.95916 1.22482 1.00773 1.03553 0.97048 1.22488 1.00152 1.03070 0.98086 1.22768 1.05958 0.88222 1.02122 1.16924 0.85468 0.83107 1.06876 1.91498 1.76717 1.48597 1.94040 0.88285 0.92697 0.92709 0.84506 0.83148 0.88825 0.88552 0.92074 0.87383 0.90565 0.90787 0.91620 0.91567 0.90826 0.90843 0.78056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.83 10.36 -19.81 -0.21 -4.04 16 3 C 0.06 0.77 6.69 -39.18 -0.26 0.51 16 4 C -0.16 -1.64 9.03 -39.47 -0.36 -2.00 16 5 C -0.15 -1.61 6.65 -39.39 -0.26 -1.87 16 6 C 0.16 2.29 6.08 -83.63 -0.51 1.79 16 7 N -0.55 -7.74 2.63 -106.35 -0.28 -8.02 16 8 C 0.53 9.70 7.63 -10.99 -0.08 9.62 16 9 O -0.49 -10.41 12.28 5.55 0.07 -10.34 16 10 C -0.15 -2.90 4.65 36.00 0.17 -2.73 16 11 S -0.06 -1.45 20.58 -107.50 -2.21 -3.66 16 12 C -0.54 -14.76 9.50 30.94 0.29 -14.47 16 13 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -25.62 13.22 55.49 0.73 -24.88 16 16 Si 0.92 20.90 29.55 -169.99 -5.02 15.88 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C 0.12 1.25 3.04 -67.93 -0.21 1.04 16 21 C -0.18 -1.52 8.93 37.16 0.33 -1.19 16 22 C -0.18 -1.50 9.05 37.16 0.34 -1.17 16 23 C -0.17 -2.78 9.02 -39.35 -0.36 -3.14 16 24 C 0.10 1.51 7.30 -39.32 -0.29 1.22 16 25 F -0.13 -2.20 17.11 2.25 0.04 -2.16 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 28 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.14 0.95 6.29 -52.49 -0.33 0.62 16 30 H 0.15 1.22 3.57 -52.49 -0.19 1.03 16 31 H 0.09 1.61 7.19 -51.92 -0.37 1.24 16 32 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.11 1.12 5.73 -51.93 -0.30 0.83 16 35 H 0.08 0.62 4.59 -51.93 -0.24 0.38 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.59 4.82 -51.93 -0.25 0.34 16 41 H 0.20 3.83 4.54 -56.18 -0.25 3.58 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.52 346.94 -6.76 -40.27 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.81 Total: 0.95 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.30 Total: -9.23 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.45 Total: -32.90 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.14 Total: -14.38 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.52 -6.76 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299560471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.068 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds